SMG7

SMG7
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1YA0
Identifiers
Aliases	SMG7 , C1orf16, EST1C, SGA56M, nonsense mediated mRNA decay factor, SMG7 nonsense mediated mRNA decay factor
External IDs	OMIM: 610964; MGI: 2682334; HomoloGene: 32235; GeneCards: SMG7; OMA:SMG7 - orthologs
Gene location (Human) Chr. Chromosome 1 (human) [1] Band 1q25.3 Start 183,472,216 bp [1] End 183,598,246 bp [1]
Gene location (Mouse) Chr. Chromosome 1 (mouse) [2] Band 1|1 G3 Start 152,712,746 bp [2] End 152,778,397 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in internal globus pallidus tendon of biceps brachii right uterine tube right testis left testis islet of Langerhans epithelium of colon ganglionic eminence postcentral gyrus cerebellar cortex Top expressed in tail of embryo genital tubercle ascending aorta aortic valve zygote blood hand cumulus cell mesenteric lymph nodes interventricular septum More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein phosphatase 2A binding protein binding telomeric DNA binding ribonuclease activity ribonucleoprotein complex binding telomerase RNA binding Cellular component cytoplasm intermediate filament cytoskeleton nucleus telomerase holoenzyme complex cytosol Biological process regulation of dephosphorylation nuclear-transcribed mRNA catabolic process, nonsense-mediated decay mRNA export from nucleus telomere maintenance via telomerase regulation of RNA stability RNA phosphodiester bond hydrolysis regulation of telomere maintenance via telomerase Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 9887 226517 Ensembl ENSG00000116698 ENSMUSG00000042772 UniProt Q92540 Q5RJH6 RefSeq (mRNA) NM_001174061 NM_014837 NM_173156 NM_201568 NM_201569 NM_001331007 NM_001350219 NM_001350220 NM_001350221 NM_001350222 NM_001375584 NM_001375585 NM_001005507 NM_001160256 NM_001160257 NM_001359257 RefSeq (protein) NP_001167532 NP_001317936 NP_775179 NP_963862 NP_963863 NP_001337148 NP_001337149 NP_001337150 NP_001337151 NP_001362513 NP_001362514 NP_001005507 NP_001153728 NP_001153729 NP_001346186 Location (UCSC) Chr 1: 183.47 – 183.6 Mb Chr 1: 152.71 – 152.78 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Protein SMG7 is a protein that in humans is encoded by the SMG7 gene. ^{[5] [6] [7] [8]}

References

1. GRCh38: Ensembl release 89: ENSG00000116698 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000042772 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Ohnishi T, Yamashita A, Kashima I, Schell T, Anders KR, Grimson A, et al. (November 2003). "Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7". Molecular Cell. 12 (5): 1187–200. doi: 10.1016/S1097-2765(03)00443-X . PMID   14636577.
6. Fukuhara N, Ebert J, Unterholzner L, Lindner D, Izaurralde E, Conti E (February 2005). "SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway". Molecular Cell. 17 (4): 537–47. doi: 10.1016/j.molcel.2005.01.010 . PMID   15721257.
7. "Entrez Gene: SMG7 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)".
8. Yang L, Kraft VA, Pfeiffer S, Merl-Pham J, Bao X, An Y, et al. (June 2020). "Nonsense-mediated decay factor SMG7 sensitizes cells to TNFα-induced apoptosis via CYLD tumor suppressor and the noncoding oncogene Pvt1". Molecular Oncology. 14 (10): 2420–2435. doi: 10.1002/1878-0261.12754 . PMC   7530794 . PMID   32602581.

Further reading

• Nakajima D, Okazaki N, Yamakawa H, Kikuno R, Ohara O, Nagase T (June 2002). "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones". DNA Research. 9 (3): 99–106. doi: 10.1093/dnares/9.3.99 . PMID   12168954.
• Nagase T, Seki N, Ishikawa K, Ohira M, Kawarabayasi Y, Ohara O, et al. (October 1996). "Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain". DNA Research. 3 (5): 321–9, 341–54. doi: 10.1093/dnares/3.5.321 . PMID   9039502.
• Sood R, Bonner TI, Makalowska I, Stephan DA, Robbins CM, Connors TD, et al. (April 2001). "Cloning and characterization of 13 novel transcripts and the human RGS8 gene from the 1q25 region encompassing the hereditary prostate cancer (HPC1) locus". Genomics. 73 (2): 211–22. doi:10.1006/geno.2001.6500. PMID   11318611.
• Reichenbach P, Höss M, Azzalin CM, Nabholz M, Bucher P, Lingner J (April 2003). "A human homolog of yeast Est1 associates with telomerase and uncaps chromosome ends when overexpressed". Current Biology. 13 (7): 568–74. doi: 10.1016/S0960-9822(03)00173-8 . PMID   12676087. S2CID   14423276.
• Snow BE, Erdmann N, Cruickshank J, Goldman H, Gill RM, Robinson MO, Harrington L (April 2003). "Functional conservation of the telomerase protein Est1p in humans". Current Biology. 13 (8): 698–704. doi: 10.1016/S0960-9822(03)00210-0 . PMID   12699629. S2CID   6685276.
• Unterholzner L, Izaurralde E (November 2004). "SMG7 acts as a molecular link between mRNA surveillance and mRNA decay". Molecular Cell. 16 (4): 587–96. doi: 10.1016/j.molcel.2004.10.013 . PMID   15546618.
• Azzalin CM, Lingner J (February 2006). "The human RNA surveillance factor UPF1 is required for S phase progression and genome stability". Current Biology. 16 (4): 433–9. doi: 10.1016/j.cub.2006.01.018 . PMID   16488880. S2CID   17197870.
• Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (November 2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi: 10.1016/j.cell.2006.09.026 . PMID   17081983. S2CID   7827573.