SPEF1

SPEF1
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	2EE7
Identifiers
Aliases	SPEF1 , C20orf28, CLAMP, SPEF1A, sperm flagellar 1
External IDs	OMIM: 610674 MGI: 3513546 HomoloGene: 15741 GeneCards: SPEF1
Gene location (Human)
Chr.	Chromosome 20 (human)
End	3,781,448 bp
Gene location (Mouse)
Chr.	Chromosome 2 (mouse)
End	131,029,202 bp
RNA expression pattern
	Top expressed in
	right uterine tube; ; caudate nucleus; ; putamen; ; nucleus accumbens; ; bronchial epithelial cell; ; prefrontal cortex; ; hippocampus proper; ; Brodmann area 9; ; cingulate gyrus; ; inferior olivary nucleus;
	Top expressed in
	olfactory epithelium; ; spermatocyte; ; spermatid; ; ganglionic eminence; ; saccule; ; right lung lobe; ; internal carotid artery; ; entorhinal cortex; ; corneal stroma; ; external carotid artery;
	More reference expression data
	More reference expression data
Gene ontology
Molecular function	protein binding ; microtubule binding ; molecular function ;
Cellular component	cytoplasm ; axoneme ; cell projection ; motile cilium ; cilium ; cytoskeleton ; cellular component ;
Biological process	negative regulation of microtubule depolymerization ; cell migration ; biological process ; cilium-dependent cell motility ; regulation of cytoskeleton organization ;
	Sources:Amigo / QuickGO
Orthologs
	25876
	70997
	ENSG00000101222
	ENSMUSG00000027329
	Q9Y4P9
	Q99JL1
	NM_015417
	NM_027641
	NP_056232
	NP_081917
	Wikidata
View/Edit Human	View/Edit Mouse

Last updated February 28, 2023

Sperm flagellar protein 1 is a protein that in humans is encoded by the SPEF1 gene.^[5]^[6]

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References

1 2 3 GRCh38: Ensembl release 89: ENSG00000101222 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000027329 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ Chan SW, Fowler KJ, Choo KH, Kalitsis P (Jul 2005). "Spef1, a conserved novel testis protein found in mouse sperm flagella". Gene. 353 (2): 189–99. doi:10.1016/j.gene.2005.04.025. PMID 15979255.
↑ "Entrez Gene: C20orf28 chromosome 20 open reading frame 28".

Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC 1356129 . PMID 16344560.
Dougherty GW, Adler HJ, Rzadzinska A, et al. (2006). "CLAMP, a novel microtubule-associated protein with EB-type calponin homology". Cell Motil. Cytoskeleton. 62 (3): 141–56. doi:10.1002/cm.20093. PMID 16206169.
Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928 . PMID 15489334.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC 139241 . PMID 12477932.
Deloukas P, Matthews LH, Ashurst J, et al. (2002). "The DNA sequence and comparative analysis of human chromosome 20". Nature. 414 (6866): 865–71. Bibcode:2001Natur.414..865D. doi: 10.1038/414865a . PMID 11780052.
Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072 . PMID 11230166.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000101222 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000027329 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid15979255-5] Chan SW, Fowler KJ, Choo KH, Kalitsis P (Jul 2005). "Spef1, a conserved novel testis protein found in mouse sperm flagella". Gene. 353 (2): 189–99. doi:10.1016/j.gene.2005.04.025. PMID 15979255.

[entrez-6] "Entrez Gene: C20orf28 chromosome 20 open reading frame 28".

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SPEF1

Related Research Articles

References

Further reading