SYNGR1

SYNGR1
Identifiers
Aliases	SYNGR1 , synaptogyrin 1
External IDs	OMIM: 603925 MGI: 1328323 HomoloGene: 3456 GeneCards: SYNGR1
Gene location (Human) Chr. Chromosome 22 (human) [1] Band 22q13.1 Start 39,349,925 bp [1] End 39,385,575 bp [1]
Gene location (Mouse) Chr. Chromosome 15 (mouse) [2] Band 15|15 E1 Start 80,091,334 bp [2] End 80,119,501 bp [2]
RNA expression pattern More reference expression data
Gene ontology Molecular function • GO:0001948 protein binding Cellular component • melanosome • integral component of membrane • cell junction • neuromuscular junction • synapse • synaptic vesicle membrane • membrane • synaptic vesicle • cell membrane • azurophil granule membrane • cytoplasmic vesicle • integral component of synaptic vesicle membrane Biological process • regulation of short-term neuronal synaptic plasticity • protein targeting • regulation of long-term neuronal synaptic plasticity • neutrophil degranulation • cellular response to leukemia inhibitory factor • regulated exocytosis • synaptic vesicle membrane organization Sources:Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	9145	20972
Ensembl	ENSG00000100321	ENSMUSG00000022415
UniProt	O43759	O55100
RefSeq (mRNA)	NM_145738 NM_004711 NM_145731	NM_009303 NM_207708
RefSeq (protein)	NP_004702 NP_663783 NP_663791	NP_033329 NP_997591
Location (UCSC)	Chr 22: 39.35 – 39.39 Mb	Chr 15: 80.09 – 80.12 Mb
PubMed search	[3]	[4]
Wikidata
View/Edit Human View/Edit Mouse

Synaptogyrin-1 is a protein that in humans is encoded by the SYNGR1 gene. ^{[5] [6] [7]}

This gene encodes an integral membrane protein associated with presynaptic vesicles in neuronal cells. The exact function of this protein is unclear, but studies of a similar murine protein suggest that it functions in synaptic plasticity without being required for synaptic transmission. The gene product belongs to the synaptogyrin gene family. Three alternatively spliced variants encoding three different isoforms have been identified. ^[7]

References

1. GRCh38: Ensembl release 89: ENSG00000100321 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000022415 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Kedra D, Pan HQ, Seroussi E, Fransson I, Guilbaud C, Collins JE, Dunham I, Blennow E, Roe BA, Piehl F, Dumanski JP (Oct 1998). "Characterization of the human synaptogyrin gene family". Hum Genet. 103 (2): 131–41. doi:10.1007/s004390050795. PMID   9760194.
6. Janz R, Sudhof TC, Hammer RE, Unni V, Siegelbaum SA, Bolshakov VY (Jan 2000). "Essential roles in synaptic plasticity for synaptogyrin I and synaptophysin I". Neuron. 24 (3): 687–700. doi:10.1016/S0896-6273(00)81122-8. PMID   10595519.
7. "Entrez Gene: SYNGR1 synaptogyrin 1".

Further reading

• Dunham I, Shimizu N, Roe BA, et al. (1999). "The DNA sequence of human chromosome 22". Nature. 402 (6761): 489–95. Bibcode:1999Natur.402..489D. doi: 10.1038/990031 . PMID   10591208.
• Mirnics K, Middleton FA, Marquez A, et al. (2000). "Molecular characterization of schizophrenia viewed by microarray analysis of gene expression in prefrontal cortex". Neuron. 28 (1): 53–67. doi:10.1016/S0896-6273(00)00085-4. PMID   11086983.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC   139241 . PMID   12477932.
• Verma R, Chauhan C, Saleem Q, et al. (2004). "A nonsense mutation in the synaptogyrin 1 gene in a family with schizophrenia". Biol. Psychiatry. 55 (2): 196–9. doi:10.1016/j.biopsych.2003.10.012. PMID   14732601.
• Collins JE, Wright CL, Edwards CA, et al. (2005). "A genome annotation-driven approach to cloning the human ORFeome". Genome Biol. 5 (10): R84. doi:10.1186/gb-2004-5-10-r84. PMC   545604 . PMID   15461802.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Verma R, Kubendran S, Das SK, et al. (2006). "SYNGR1 is associated with schizophrenia and bipolar disorder in southern India". J. Hum. Genet. 50 (12): 635–40. doi: 10.1007/s10038-005-0307-z . PMID   16215643.
• Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC   1356129 . PMID   16344560.
• Cheng MC, Chen CH (2007). "Identification of rare mutations of synaptogyrin 1 gene in patients with schizophrenia". Journal of Psychiatric Research. 41 (12): 1027–31. doi:10.1016/j.jpsychires.2006.08.010. PMID   17049558.
• Chi A, Valencia JC, Hu ZZ, et al. (2007). "Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes". J. Proteome Res. 5 (11): 3135–44. doi:10.1021/pr060363j. PMID   17081065.