Corals are colonial marine invertebrates within the class Anthozoa of the phylum Cnidaria. They typically form compact colonies of many identical individual polyps. Coral species include the important reef builders that inhabit tropical oceans and secrete calcium carbonate to form a hard skeleton.
Foraminifera are single-celled organisms, members of a phylum or class of Cercozoan protists characterized by streaming granular ectoplasm for catching food and other uses; and commonly an external shell of diverse forms and materials. Tests of chitin are believed to be the most primitive type. Most foraminifera are marine, the majority of which live on or within the seafloor sediment, while a smaller number float in the water column at various depths, which belong to the suborder Globigerinina. Fewer are known from freshwater or brackish conditions, and some very few (nonaquatic) soil species have been identified through molecular analysis of small subunit ribosomal DNA.
Scleractinia, also called stony corals or hard corals, are marine animals in the phylum Cnidaria that build themselves a hard skeleton. The individual animals are known as polyps and have a cylindrical body crowned by an oral disc in which a mouth is fringed with tentacles. Although some species are solitary, most are colonial. The founding polyp settles and starts to secrete calcium carbonate to protect its soft body. Solitary corals can be as much as 25 cm (10 in) across but in colonial species the polyps are usually only a few millimetres in diameter. These polyps reproduce asexually by budding, but remain attached to each other, forming a multi-polyp colony of clones with a common skeleton, which may be up to several metres in diameter or height according to species.
Symbiodinium is a genus of dinoflagellates that encompasses the largest and most prevalent group of endosymbiotic dinoflagellates known and have photosymbiotic relationships with many species. These unicellular microalgae commonly reside in the endoderm of tropical cnidarians such as corals, sea anemones, and jellyfish, where the products of their photosynthetic processing are exchanged in the host for inorganic molecules. They are also harbored by various species of demosponges, flatworms, mollusks such as the giant clams, foraminifera (soritids), and some ciliates. Generally, these dinoflagellates enter the host cell through phagocytosis, persist as intracellular symbionts, reproduce, and disperse to the environment. The exception is in most mollusks, where these symbionts are intercellular. Cnidarians that are associated with Symbiodinium occur mostly in warm oligotrophic (nutrient-poor), marine environments where they are often the dominant constituents of benthic communities. These dinoflagellates are therefore among the most abundant eukaryotic microbes found in coral reef ecosystems.
Aiptasia is a genus of a symbiotic cnidarian belonging to the class Anthozoa. Aiptasia is a widely distributed genus of temperate and tropical sea anemones of benthic lifestyle typically found living on mangrove roots and hard substrates. These anemones, as well as many other cnidarian species, often contain symbiotic dinoflagellate unicellular algae of the genus Symbiodinium living inside nutritive cells. The symbionts provide food mainly in the form of lipids and sugars produced from photosynthesis to the host while the hosts provides inorganic nutrients and a constant and protective environment to the algae. Species of Aiptasia are relatively weedy anemones able to withstand a relatively wide range of salinities and other water quality conditions. In the case of A. pallida and A. pulchella, their hardiness coupled with their ability to reproduce very quickly and out-compete other species in culture gives these anemones the status of pest from the perspective of coral reef aquarium hobbyists. These very characteristics make them easy to grow in the laboratory and thus they are extensively used as model organisms for scientific study. In this respect, Aiptasia have contributed a significant amount of knowledge regarding cnidarian biology, especially human understanding of cnidarian-algal symbioses, a biological phenomenon crucial to the survival of corals and coral reef ecosystems. The dependence of coral reefs on the health of the symbiosis is dramatically illustrated by the devastating effects experienced by corals due to the loss of algal symbionts in response to environmental stress, a phenomenon known as coral bleaching.
Cyanobionts are cyanobacteria that live in symbiosis with a wide range of organisms such as terrestrial or aquatic plants; as well as, algal and fungal species. They can reside within extracellular or intracellular structures of the host. In order for a cyanobacterium to successfully form a symbiotic relationship, it must be able to exchange signals with the host, overcome defense mounted by the host, be capable of hormogonia formation, chemotaxis, heterocyst formation, as well as possess adequate resilience to reside in host tissue which may present extreme conditions, such as low oxygen levels, and/or acidic mucilage. The most well-known plant-associated cyanobionts belong to the genus Nostoc. With the ability to differentiate into several cell types that have various functions, members of the genus Nostoc have the morphological plasticity, flexibility and adaptability to adjust to a wide range of environmental conditions, contributing to its high capacity to form symbiotic relationships with other organisms. Several cyanobionts involved with fungi and marine organisms also belong to the genera Richelia, Calothrix, Synechocystis, Aphanocapsa and Anabaena, as well as the species Oscillatoria spongeliae. Although there are many documented symbioses between cyanobacteria and marine organisms, little is known about the nature of many of these symbioses. The possibility of discovering more novel symbiotic relationships is apparent from preliminary microscopic observations.
The resilience of coral reefs is the biological ability of coral reefs to recover from natural and anthropogenic disturbances such as storms and bleaching episodes. Resilience refers to the ability of biological or social systems to overcome pressures and stresses by maintaining key functions through resisting or adapting to change. Reef resistance measures how well coral reefs tolerate changes in ocean chemistry, sea level, and sea surface temperature. Reef resistance and resilience are important factors in coral reef recovery from the effects of ocean acidification. Natural reef resilience can be used as a recovery model for coral reefs and an opportunity for management in marine protected areas (MPAs).
Vitrella brassicaformis (CCMP3155) is a unicellular alga belonging to the eukaryotic supergroup Alveolata. V. brassicaformis and its closest known relative, Chromera velia, are the only two currently described members of the phylum Chromerida, which in turn constitutes part of the taxonomically unranked group Colpodellida. Chromerida is phylogenetically closely related to the phylum Apicomplexa, which includes Plasmodium, the agent of malaria. Notably, both V. brassicaformis and C. velia are photosynthetic, each containing a complex secondary plastid. This characteristic defined the discovery of these so-called 'chromerids,' as their photosynthetic capacity positioned them to shed light upon the evolution of Apicomplexa's non-photosynthetic parasitism. Both genera lack chlorophyll b or c; these absences link the two taxonomically, as algae bearing only chlorophyll a are rare amid the biodiversity of life. Despite their similarities, V. brassicaformis differs significantly from C. velia in morphology, lifecycle, and accessory photosynthetic pigmentation. V. brassicaformis has a green color, with a complex lifecycle involving multiple pathways and a range of sizes and morphologies, while Chromera has a brown color and cycles through a simpler process from generation to generation. The color differences are due to differences in accessory pigments.
Isopora palifera is a species of stony coral in the family Acroporidae. It is a reef building coral living in shallow water and adopts different forms depending on the water conditions where it is situated. It is found in the Western Indo-Pacific Ocean as far east as Australia.
Plesiastrea versipora is an encrusting coral found in the Indian and Pacific Oceans. It is of interest because of its ability to thrive in both tropical and temperate environments, and to grow massive.
Litophyton arboreum, also known as broccoli coral, is a common soft coral (octocoral) found from the Red Sea to the Western Pacific. It grows up to 80 cm, usually on seaward reef slopes or hard bottoms. The color of L. arboreum varies from pale olive-green to yellow or grey. L. arboreum are anthozoans in the order Alcyonacea in the family Nephtheidae. The L. arboreum was originally classified in 1775 by Peter Forsskål, a Swedish Linnaean naturalist. As of 2016, the entire genus Litophyton was reclassified using phylogenetic data, in contrast to its original morphological classification.
Nassellaria is an order of Rhizaria belonging to the class Radiolaria. The organisms of this order are characterized by a skeleton cross link with a cone or ring.
Microbial symbiosis in marine animals was not discovered until 1981. In the time following, symbiotic relationships between marine invertebrates and chemoautotrophic bacteria have been found in a variety of ecosystems, ranging from shallow coastal waters to deep-sea hydrothermal vents. Symbiosis is a way for marine organisms to find creative ways to survive in a very dynamic environment. They are different in relation to how dependent the organisms are on each other or how they are associated. It is also considered a selective force behind evolution in some scientific aspects. The symbiotic relationships of organisms has the ability to change behavior, morphology and metabolic pathways. With increased recognition and research, new terminology also arises, such as holobiont, which the relationship between a host and its symbionts as one grouping. Many scientists will look at the hologenome, which is the combined genetic information of the host and its symbionts. These terms are more commonly used to describe microbial symbionts.
A corallivore is an animal that feeds on coral. Corallivores are an important group of reef organism because they can influence coral abundance, distribution, and community structure. Corallivores feed on coral using a variety of unique adaptations and strategies. Known corallivores include certain mollusks, annelids, fish, crustaceans, flatworms and echinoderms. The first recorded evidence of corallivory was presented by Charles Darwin in 1842 during his voyage on HMS Beagle in which he found coral in the stomach of two Scarus parrotfish.
Coral diseases are transmissible pathogens that cause the degradation of coral colonies. Coral cover in reef ecosystems has decreased significantly for a diverse set of reasons, ranging from variable environmental conditions to mechanical breakdowns from storms. In recent years, diseases that infect and kill coral have shown to be a threat to the health of coral reefs. Since the first coral disease was reported in 1965, many different kinds of diseases have popped up in mostly Caribbean waters. These diseases are diverse, including pathogens of bacteria, fungi, viruses, and protozoans. Coral diseases have widespread implications, impacting entire ecosystems and communities of organisms. Researchers are working to understand these diseases, and how potential treatments could stop these pathogens from causing the widespread death of corals in a way that permanently impacts the community structure of reefs.
Marine biogenic calcification refers to the production of calcium carbonate by organisms in the global ocean.
Vital effects are biological impacts on geochemical records. Many marine organisms, ranging from zooplankton to phytoplankton to reef builders, create shells or skeletons from chemical compounds dissolved in seawater. This process, which is also called biomineralization, therefore records the chemical signature of seawater during the time of shell formation. However, different species have different metabolism and physiology, causing them to create their shells in different ways. These biological distinctions cause species to record slightly different chemical signatures in their shells; these differences are known as vital effects.
Pamela Hallock Muller is a scientist, oceanographer and professor at the University of South Florida in the College of Marine Science.
Marginopora vertebralis is a foraminiferan, 1 to 2 centimetres in diameter found in the tropical Indo-Pacific region. It is a disc-shaped, macroscopic unicellular organism, with a hard calcareous test.
Oculina arbuscula is a branching temperate coral found along the east coast of the United States from Florida to North Carolina. It has a facultative symbiosis with microalgae of the family Symbiodiniaceae. Unlike tropical corals, O. arbuscula can survive without its algal endosymbionts by switching to a predominantly heterotrophic feeding strategy. Symbiotic colonies are typically found in shallower waters due to light availability, whereas aposymbiotic or mixed colonies are found as deep as 200m. The ability of O. arbuscula to exist in different symbiotic states makes it a good model system for studying the cnidarian-dinoflagellate symbiosis.
