TOP3B

TOP3B
Identifiers
Aliases	TOP3B , TOP3B1, topoisomerase (DNA) III beta, DNA topoisomerase III beta
External IDs	OMIM: 603582 MGI: 1333803 HomoloGene: 2923 GeneCards: TOP3B
Gene location (Human) Chr. Chromosome 22 (human) [1] Band 22q11.22 Start 21,957,025 bp [1] End 21,982,813 bp [1]
Gene location (Mouse) Chr. Chromosome 16 (mouse) [2] Band 16|16 A3 Start 16,688,600 bp [2] End 16,710,854 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in middle frontal gyrus frontal pole stromal cell of endometrium Brodmann area 10 canal of the cervix spleen right lobe of liver right lobe of thyroid gland right uterine tube body of stomach Top expressed in spermatocyte internal carotid artery superior frontal gyrus external carotid artery lip neural tube medullary collecting duct spermatid cerebellar cortex yolk sac More reference expression data BioGPS n/a
Gene ontology Molecular function DNA binding DNA topoisomerase type I (single strand cut, ATP-independent) activity protein binding isomerase activity RNA binding DNA topoisomerase activity Cellular component condensed chromosome nucleus Biological process chromosome segregation DNA topological change Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 8940 21976 Ensembl ENSG00000100038 ENSMUSG00000022779 UniProt O95985 Q9Z321 RefSeq (mRNA) NM_001282112 NM_001282113 NM_003935 NM_001349845 NM_001349847 NM_001349848 NM_001349850 NM_001349851 NM_001349852 NM_011624 NM_001326576 RefSeq (protein) NP_001269041 NP_001269042 NP_003926 NP_001336774 NP_001336776 NP_001336777 NP_001336779 NP_001336780 NP_001336781 NP_001313505 NP_035754 Location (UCSC) Chr 22: 21.96 – 21.98 Mb Chr 16: 16.69 – 16.71 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

DNA topoisomerase 3-beta-1 is an enzyme that in humans is encoded by the TOP3B gene. ^{[5] [6] [7]}

This gene encodes a DNA topoisomerase, an enzyme that controls and alters the topologic states of DNA during transcription. This enzyme catalyzes the transient breaking and rejoining of a single strand of DNA which allows the strands to pass through one another, thus relaxing the supercoils and altering the topology of DNA. The enzyme interacts with DNA helicase SGS1 and plays a role in DNA recombination, cellular aging and maintenance of genome stability. Alternative splicing of the C-terminus of this gene results in three transcript variants which have distinct tissue specificity; however, not all variants have been fully described. ^[7]

References

1. GRCh38: Ensembl release 89: ENSG00000100038 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000022779 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Tang D, Kidd VJ (Dec 1998). "Cleavage of DFF-45/ICAD by multiple caspases is essential for its function during apoptosis". J Biol Chem. 273 (44): 28549–52. doi: 10.1074/jbc.273.44.28549 . PMID   9786842.
6. Kawasaki K, Minoshima S, Nakato E, Shibuya K, Shintani A, Schmeits JL, Wang J, Shimizu N (May 1997). "One-megabase sequence analysis of the human immunoglobulin lambda gene locus". Genome Res. 7 (3): 250–61. doi: 10.1101/gr.7.3.250 . PMID   9074928.
7. "Entrez Gene: TOP3B topoisomerase (DNA) III beta".

Further reading

• Andersson B, Wentland MA, Ricafrente JY, et al. (1996). "A "double adaptor" method for improved shotgun library construction". Anal. Biochem. 236 (1): 107–13. doi:10.1006/abio.1996.0138. PMID   8619474.
• Yu W, Andersson B, Worley KC, et al. (1997). "Large-scale concatenation cDNA sequencing". Genome Res. 7 (4): 353–8. doi:10.1101/gr.7.4.353. PMC   139146 . PMID   9110174.
• Seki T, Seki M, Onodera R, et al. (1998). "Cloning of cDNA encoding a novel mouse DNA topoisomerase III (Topo IIIbeta) possessing negatively supercoiled DNA relaxing activity, whose message is highly expressed in the testis". J. Biol. Chem. 273 (44): 28553–6. doi: 10.1074/jbc.273.44.28553 . PMID   9786843.
• Ng SW, Liu Y, Hasselblatt KT, et al. (1999). "A new human topoisomerase III that interacts with SGS1 protein". Nucleic Acids Res. 27 (4): 993–1000. doi:10.1093/nar/27.4.993. PMC   148278 . PMID   9927731.
• Shimamoto A, Nishikawa K, Kitao S, Furuichi Y (2000). "Human RecQ5beta, a large isomer of RecQ5 DNA helicase, localizes in the nucleoplasm and interacts with topoisomerases 3alpha and 3beta". Nucleic Acids Res. 28 (7): 1647–55. doi:10.1093/nar/28.7.1647. PMC   102787 . PMID   10710432.
• Kobayashi M, Hanai R (2001). "M phase-specific association of human topoisomerase IIIbeta with chromosomes". Biochem. Biophys. Res. Commun. 287 (1): 282–7. doi:10.1006/bbrc.2001.5580. PMID   11549288.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID   14702039.
• Lehner B, Sanderson CM (2004). "A protein interaction framework for human mRNA degradation". Genome Res. 14 (7): 1315–23. doi:10.1101/gr.2122004. PMC   442147 . PMID   15231747.
• Cho YH, Park JY, Han SY, Chung IK (2004). "Identification of the functional elements in the promoter region of human DNA topoisomerase IIIbeta gene". Biochim. Biophys. Acta. 1679 (3): 272–8. doi:10.1016/j.bbaexp.2004.08.001. PMID   15358519.
• Collins JE, Wright CL, Edwards CA, et al. (2005). "A genome annotation-driven approach to cloning the human ORFeome". Genome Biol. 5 (10): R84. doi:10.1186/gb-2004-5-10-r84. PMC   545604 . PMID   15461802.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.