Tomato chlorosis virus

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Tomato chlorosis virus
Virus classification OOjs UI icon edit-ltr.svg
(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum: Kitrinoviricota
Class: Alsuviricetes
Order: Martellivirales
Family: Closteroviridae
Genus: Crinivirus
Species:
Tomato chlorosis virus

The tomato chlorosis virus (ToCV) is an RNA virus belonging to the genus crinivirus , a group of plant-infecting viruses in the family Closteroviridae . [1]

Contents

Tomato chlorosis virus (ToCV) was originally discovered in the mid-1990s in greenhouse-grown tomato plants in north-central Florida, USA. [2] It is an emerging whitefly-transmitted virus that can be found in a variety of tropical, subtropical, and temperate areas around the world. [3] The plant pathogen causes a yellow leaf disorder in solanaceous crops including tomatoes. [1] ToCV is transmissible by whiteflies, phloem-limited and causes symptoms of interveinal chlorosis followed by necrosis in the tomato plants leaves resulting in a reduced fruit yield. [1] ToCV has a wide range of hosts such as pepper and potato. [4] ToCV is transmitted in a semi-persistent manner by whiteflies of the Bemisia tabaci cryptic species complex (at least MEAM1, MED, and NW, formerly biotypes B, Q, and A, respectively), Trialeurodes vaporariorum , and T. abutiloneus. [2] Although ToCV-resistant genotypes have been found in some wild tomato species, these are yet available commercially. [4]

Genome organization

So far, 17 full genome sequences of ToCV have been documented, with one originating from the United States, Spain Greece, Brazil, Taiwan, two from China, and ten from Korea. [4] The ToCV genome exhibits the standard structure seen in bipartite criniviruses, consisting of two linear, positive-sense, single-stranded RNA molecules: RNA1 (8593–8596 nt) and RNA2 (8242–8247 nt). [4] RNA1 harbors four open reading frames (ORF 1a/1b to ORF3), which could encode proteins linked to virus replication and the inhibition of gene silencing. RNA2 features nine ORFs (ORF4 to ORF12), potentially encoding proteins involved in virus encapsidation, cell-to-cell movement, membrane association, whitefly transmission, and the suppression of gene silencing. Both RNAs are enclosed in distinct flexuous rod particles, measuring approximately 800–850 nm in length. [4]

Schematic representation of the genomic structure of tomato chlorosis virus RNA1 and RNA2 Gene model for ToCV.jpg
Schematic representation of the genomic structure of tomato chlorosis virus RNA1 and RNA2





Figure 2: Illustration depicting the genetic organization of RNA1 and RNA2 in tomato chlorosis virus.

Boxes depict open reading frames (ORF), with the potential protein products specified within. The inset displays symbols denoting the (presumed) functions of proteins: proteins linked to replication, suppressors of gene silencing, structural coat proteins, and those involved in whitefly transmission. CP stands for coat protein, CPm refers to the minor coat protein, HSP70h signifies the heat shock protein 70 homologue, HEL represents helicase, MTR stands for methyl transferase, PRO denotes proteinase, and RdRp indicates RNA-dependent RNA polymerase. [4]

Mode of transmission

Similar to other members of the crinivirus genus, ToCV is transmitted by whiteflies in a semi-persistent manner, making it one of just two criniviruses transmitted by whiteflies belonging to the Bemisia and Trialeurodes genera. [4]

Disease symptoms

The syndrome known as 'yellow leaf disorder' in tomatoes is characterized by the yellowing and thickening of leaves between the veins. Initial symptoms manifest on the lower leaves and progress towards the upper sections of the plant. Older leaves exhibit bronzing and necrosis, leading to a decrease in overall vigor and a reduction in fruit yield. In other host plants, prevalent symptoms involve interveinal chlorosis and mild yellowing observed on aging leaves. [4]

Related Research Articles

<span class="mw-page-title-main">Whitefly</span> Family of insects

Whiteflies are Hemipterans that typically feed on the undersides of plant leaves. They comprise the family Aleyrodidae, the only family in the superfamily Aleyrodoidea. More than 1550 species have been described.

<i>Geminiviridae</i> Family of viruses

Geminiviridae is a family of plant viruses that encode their genetic information on a circular genome of single-stranded (ss) DNA. There are 520 species in this family, assigned to 14 genera. Diseases associated with this family include: bright yellow mosaic, yellow mosaic, yellow mottle, leaf curling, stunting, streaks, reduced yields. They have single-stranded circular DNA genomes encoding genes that diverge in both directions from a virion strand origin of replication. According to the Baltimore classification they are considered class II viruses. It is the largest known family of single stranded DNA viruses.

<i>Closteroviridae</i> Family of viruses

Closteroviridae is a family of viruses. Plants serve as natural hosts. There are four genera and 59 species in this family, seven of which are unassigned to a genus. Diseases associated with this family include: yellowing and necrosis, particularly affecting the phloem.

<i>Nodaviridae</i> Family of viruses

Nodaviridae is a family of nonenveloped positive-strand RNA viruses. Vertebrates and invertebrates serve as natural hosts. Diseases associated with this family include: viral encephalopathy and retinopathy in fish. There are nine species in the family, assigned to two genera.

<i>Tombusviridae</i> Family of viruses

Tombusviridae is a family of single-stranded positive sense RNA plant viruses. There are three subfamilies, 17 genera, and 95 species in this family. The name is derived from Tomato bushy stunt virus (TBSV).

<i>Begomovirus</i> Genus of viruses

Begomovirus is a genus of viruses, in the family Geminiviridae. They are plant viruses that as a group have a very wide host range, infecting dicotyledonous plants. Worldwide they are responsible for a considerable amount of economic damage to many important crops such as tomatoes, beans, squash, cassava and cotton. There are 445 species in this genus.

<i>Crinivirus</i> Genus of viruses

Crinivirus, formerly the lettuce infectious yellows virus group, is a genus of viruses, in the family Closteroviridae. They are linear, single-stranded positive sense RNA viruses. There are 14 species in this genus. Diseases associated with this genus include: yellowing and necrosis, particularly affecting the phloem.

Rice hoja blanca tenuivirus (RHBV), Spanish for "white leaf rice virus", is a plant virus in the family Phenuiviridae. RHBV causes Hoja blanca disease (HBD), which affects the leaves of the rice plant Oryza sativa, stunting the growth of the plant or killing it altogether. RHBV is carried by an insect vector, Tagosodes orizicolus, a type of planthopper. The virus is found in South America, Mexico, throughout Central America, the Caribbean region, and the southern United States. In South America, the disease is endemic to Colombia, Venezuela, Ecuador, Peru, Suriname, French Guiana and Guyana.

<i>Cucumber mosaic virus</i> Species of virus

Cucumber mosaic virus (CMV) is a plant pathogenic virus in the family Bromoviridae. This virus has a worldwide distribution and a very wide host range, having the reputation of the widest host range of any known plant virus. It can be transmitted from plant to plant both mechanically by sap and by aphids in a stylet-borne fashion. It can also be transmitted in seeds and by the parasitic weeds, Cuscuta sp. (dodder).

Potato virus X (PVX) is a plant pathogenic virus of the family Alphaflexiviridae and the order Tymovirales.

Tomato yellow leaf curl virus (TYLCV) is a DNA virus from the genus Begomovirus and the family Geminiviridae. TYLCV causes the most destructive disease of tomato, and it can be found in tropical and subtropical regions causing severe economic losses. This virus is transmitted by an insect vector from the family Aleyrodidae and order Hemiptera, the whitefly Bemisia tabaci, commonly known as the silverleaf whitefly or the sweet potato whitefly. The primary host for TYLCV is the tomato plant, and other plant hosts where TYLCV infection has been found include eggplants, potatoes, tobacco, beans, and peppers. Due to the rapid spread of TYLCV in the last few decades, there is an increased focus in research trying to understand and control this damaging pathogen. Some interesting findings include the virus being sexually transmitted from infected males to non-infected females, and an evidence that TYLCV is transovarially transmitted to offspring for two generations.

<i>Orthotospovirus</i> Genus of viruses

Orthotospovirus is a genus of negative-strand RNA viruses, in the family Tospoviridae of the order Bunyavirales, which infects plants. Tospoviruses take their name from the species Tomato spotted wilt orthotospovirus (TSWV) which was discovered in Australia in 1919. TSWV remained the only known member of the family until the early 1990s when genetic characterisation of plant viruses became more common. There are now at least twenty species in the genus with more being discovered on a regular basis. Member viruses infect over eight hundred plant species from 82 different families.

The Potato yellow vein virus (PYVV) is a plant pathogen of the Closteroviridae family. It is a whitefly-transmitted closterovirus vectored by Trialeurodes vaporariorum, which is known to cause a yellowing disease in potato crops in South America. PYVV RNA have a conserved 3'-terminal secondary structure, which includes a pseudoknot.

Orchid fleck dichorhavirus, commonly called Orchid fleck virus (OFV), is a non-enveloped, segmented, single-stranded (ss) RNA negative-strand virus, transmitted by the false spider mite, Brevipalpus californicus. OFV causes necrotic and chlorotic lesions on the leaves of many genera in the family Orchidaceae.

<i>Fig mosaic emaravirus</i> Species of virus

Fig mosaic emaravirus (FMV) is a segmented, negative sense, single-stranded RNA virus that is determined to be the causal agent of fig mosaic disease (FMD) in fig plants, Ficus carica. It is a member of the genus Emaravirus and order Bunyavirales and is transmitted mainly by the eriophyid mite Aceria ficus. FMV can cause a range of symptoms varying in severity, including leaf chlorosis, deformity, and mosaic or discoloration patterns, as well as premature fruit drop.

Abutilon yellows virus (AbYV is a virus of the genus Crinivirus.

Soybean vein necrosis orthotospovirus is a plant pathogenic virus of soybeans. SVNV is a relatively new virus, which was discovered in Tennessee in 2008 and has recently been found in many US states from the Southeast and East coast to some western states including CA. This pathogen initially causes intraveinal chlorosis (yellowing) in leaves. This chlorosis then spreads throughout the leaf and eventually these chlorotic areas can become necrotic. It is a member of the order Bunyavirales, family Tospoviridae and genus Orthotospovirus, which is the only genus within this virus family that infects plants. Like other members of Bunyavirales, this virus is enveloped and has a negative sense single-stranded RNA (−ssRNA) genome composed of three genomic segments. It encodes proteins on the M and S segments in an ambisense manner.

Cassava brown streak virus is a species of positive-strand RNA viruses in the genus Ipomovirus and family Potyviridae which infects plants. Member viruses are unique in their induction of pinwheel, or scroll-shaped inclusion bodies in the cytoplasm of infected cells. Cylindrical inclusion bodies include aggregations of virus-encoded helicase proteins. These inclusion bodies are thought to be sites of viral replication and assembly, making then an important factor in the viral lifecycle. Viruses from both the species Cassava brown streak virus and Ugandan cassava brown streak virus (UCBSV), lead to the development of Cassava Brown Streak Disease (CBSD) within cassava plants.

<i>Sweet potato leaf curl virus</i> Species of virus

Sweet potato leaf curl virus is commonly abbreviated SPLCV. Select isolates are referred to as SPLCV followed by an abbreviation of where they were isolated. For example, the Brazilian isolate is referred to as SPLCV-Br.

<i>Blueberry mosaic associated ophiovirus</i> Species of virus

The Blueberry mosaic associated ophiovirus (B1MaV) is a plant virus which infects blueberry plants, causing a discoloration of the leaves of the plants in a mosaic-like pattern. The disease is found in blueberry plants in many regions of North America, as well as South America, Europe, New Zealand, and South Africa. Within these regions the virus is most often found in high blueberry-yielding areas, but can be spread to other locations. Blueberry mosaic associatedophiovirus is one of seven species in the genus Ophiovirus. It is a member of the Aspiviridae family, in the Serpentovirales order, and in the Milnevircetes class. The Ophioviridae viruses are characterized by a flexible and elongated nucleocapsid that is composed mostly of filamentous structures and is helically symmetrical. It also has a non-enveloped protein capsid that is capable of coiling around itself allowing for a super-coiled structure and the helical symmetry. The virus has the potential to be symptomatic or asymptomatic within plants causing the display of symptoms in only a few plants, but the ability to transmit the virus unknowingly in many plants. B1MaV often remains asymptomatic for long periods of time after initial infection allowing for blind transmission.

References

  1. 1 2 3 Navas-Hermosilla E, Fiallo-Olivé E, Navas-Castillo J (2021). "Infectious Clones of Tomato Chlorosis Virus: Toward Increasing Efficiency by Introducing the Hepatitis Delta Virus Ribozyme". Frontiers in Microbiology. 12: 693457. doi: 10.3389/fmicb.2021.693457 . PMID   34381428.
  2. 1 2 Wisler GC, Duffus JE, Liu HY, Li RH (March 1998). "Ecology and Epidemiology of Whitefly-Transmitted Closteroviruses". Plant Disease. 82 (3): 270–280. doi:10.1094/PDIS.1998.82.3.270. PMID   30856856.
  3. Navas-Castillo J, Fiallo-Olivé E, Sánchez-Campos S (2011-09-08). "Emerging virus diseases transmitted by whiteflies". Annual Review of Phytopathology. 49 (1): 219–248. doi:10.1146/annurev-phyto-072910-095235. PMID   21568700.
  4. 1 2 3 4 5 6 7 8 Fiallo-Olivé E, Navas-Castillo J (September 2019). "Tomato chlorosis virus, an emergent plant virus still expanding its geographical and host ranges". Molecular Plant Pathology. 20 (9): 1307–1320. doi: 10.1111/mpp.12847 . PMC   6715620 . PMID   31267719.