VFDB

Last updated
Virulence Factor Database
Content
DescriptionA database that tracks bacterial virulence factors
Data types
captured
Pathogenic bacteria
Organisms Bacteria
Contact
Primary citation PMID   15608208
Access
Website www.mgc.ac.cn/VFs/main.htm
Miscellaneous
Bookmarkable
entities
yes

VFDB also known as Virulence Factor Database is a database that provides scientist quick access to virulence factors in bacterial pathogens. [1] It can be navigated and browsed using genus or words. A BLAST tool is provided for search against known virulence factors. [2] VFDB contains a collection of 16 important bacterial pathogens. [1] Perl scripts were used to extract positions and sequences of VF from GenBank. [3] Clusters of Orthologous Groups (COG) was used to update incomplete annotations. [1] More information was obtained by NCBI. VFDB was built on Windows operation systems on DELL PowerEdge 1600SC servers.[ citation needed ]

See also

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References

  1. 1 2 3 Chen, L. (2004-12-17). "VFDB: a reference database for bacterial virulence factors". Nucleic Acids Research. 33 (Database issue): D325–D328. doi:10.1093/nar/gki008. ISSN   1362-4962. PMC   539962 . PMID   15608208.
  2. Altschul, S. (1997-09-01). "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". Nucleic Acids Research. 25 (17): 3389–3402. doi:10.1093/nar/25.17.3389. ISSN   1362-4962. PMC   146917 . PMID   9254694.
  3. Benson, D. A.; Karsch-Mizrachi, I.; Lipman, D. J.; Ostell, J.; Sayers, E. W. (2009-01-01). "GenBank". Nucleic Acids Research. 37 (Database): D26–D31. doi:10.1093/nar/gkn723. ISSN   0305-1048. PMC   2686462 . PMID   18940867.