ASF1A

ASF1A
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1TEY, 2I32, 2IIJ, 2IO5, 3AAD, 5C3I
Identifiers
Aliases	ASF1A , CGI-98, CIA, HSPC146, anti-silencing function 1A histone chaperone
External IDs	OMIM: 609189 MGI: 1913653 HomoloGene: 8528 GeneCards: ASF1A
Gene location (Human) Chr. Chromosome 6 (human) [1] Band 6q22.31 Start 118,894,152 bp [1] End 118,909,171 bp [1]
Gene location (Mouse) Chr. Chromosome 10 (mouse) [2] Band 10|10 B3 Start 53,472,853 bp [2] End 53,485,321 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in oocyte secondary oocyte internal globus pallidus hair follicle ganglionic eminence germinal epithelium spongy bone Achilles tendon palpebral conjunctiva superficial temporal artery Top expressed in medial ganglionic eminence secondary oocyte primitive streak abdominal wall maxillary prominence somite Paneth cell hair follicle medullary collecting duct condyle More reference expression data BioGPS More reference expression data
Gene ontology Molecular function histone binding chromatin binding protein binding Cellular component nucleus nucleoplasm protein-containing complex Biological process DNA replication-dependent chromatin assembly muscle cell differentiation nucleosome assembly regulation of transcription, DNA-templated DNA repair osteoblast differentiation transcription, DNA-templated chromatin organization Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 25842 66403 Ensembl ENSG00000111875 ENSMUSG00000019857 UniProt Q9Y294 Q9CQE6 RefSeq (mRNA) NM_014034 NM_025541 RefSeq (protein) NP_054753 NP_079817 Location (UCSC) Chr 6: 118.89 – 118.91 Mb Chr 10: 53.47 – 53.49 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Histone chaperone ASF1A is a protein that in humans is encoded by the ASF1A gene. ^{[5] [6] [7]}

Function

This gene encodes a member of the H3/H4 family of histone chaperone proteins and is similar to the anti-silencing function-1 gene in yeast. The protein is a key component of a histone donor complex that functions in nucleosome assembly. It interacts with histones H3 and H4, and functions together with a chromatin assembly factor during DNA replication and repair. ^[7]

Interactions

ASF1A has been shown to interact with TLK1, ^{[8] [9]} TLK2, ^[8] CHAF1B ^[10] and CHAF1A. ^[10]

References

1. GRCh38: Ensembl release 89: ENSG00000111875 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000019857 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Lai CH, Chou CY, Ch'ang LY, Liu CS, Lin W (May 2000). "Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics". Genome Research. 10 (5): 703–13. doi:10.1101/gr.10.5.703. PMC   310876 . PMID   10810093.
6. Zhang QH, Ye M, Wu XY, Ren SX, Zhao M, Zhao CJ, Fu G, Shen Y, Fan HY, Lu G, Zhong M, Xu XR, Han ZG, Zhang JW, Tao J, Huang QH, Zhou J, Hu GX, Gu J, Chen SJ, Chen Z (Oct 2000). "Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells". Genome Research. 10 (10): 1546–60. doi:10.1101/gr.140200. PMC   310934 . PMID   11042152.
7. "Entrez Gene: ASF1A ASF1 anti-silencing function 1 homolog A (S. cerevisiae)".
8. Silljé HH, Nigg EA (Jul 2001). "Identification of human Asf1 chromatin assembly factors as substrates of Tousled-like kinases". Current Biology. 11 (13): 1068–73. Bibcode:2001CBio...11.1068S. doi: 10.1016/S0960-9822(01)00298-6 . PMID   11470414. S2CID   8866062.
9. Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M (Oct 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.
10. Mello JA, Silljé HH, Roche DM, Kirschner DB, Nigg EA, Almouzni G (Apr 2002). "Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway". EMBO Reports. 3 (4): 329–34. doi:10.1093/embo-reports/kvf068. PMC   1084056 . PMID   11897662.

Further reading

• Munakata T, Adachi N, Yokoyama N, Kuzuhara T, Horikoshi M (Mar 2000). "A human homologue of yeast anti-silencing factor has histone chaperone activity". Genes to Cells. 5 (3): 221–33. doi: 10.1046/j.1365-2443.2000.00319.x . PMID   10759893. S2CID   20198031.
• Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, Mewes HW, Ottenwälder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A (Mar 2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Research. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC   311072 . PMID   11230166.
• Silljé HH, Nigg EA (Jul 2001). "Identification of human Asf1 chromatin assembly factors as substrates of Tousled-like kinases". Current Biology. 11 (13): 1068–73. Bibcode:2001CBio...11.1068S. doi: 10.1016/S0960-9822(01)00298-6 . PMID   11470414. S2CID   8866062.
• Mello JA, Silljé HH, Roche DM, Kirschner DB, Nigg EA, Almouzni G (Apr 2002). "Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway". EMBO Reports. 3 (4): 329–34. doi:10.1093/embo-reports/kvf068. PMC   1084056 . PMID   11897662.
• Chimura T, Kuzuhara T, Horikoshi M (Jul 2002). "Identification and characterization of CIA/ASF1 as an interactor of bromodomains associated with TFIID". Proceedings of the National Academy of Sciences of the United States of America. 99 (14): 9334–9. Bibcode:2002PNAS...99.9334C. doi: 10.1073/pnas.142627899 . PMC   123141 . PMID   12093919.
• Umehara T, Horikoshi M (Sep 2003). "Transcription initiation factor IID-interactive histone chaperone CIA-II implicated in mammalian spermatogenesis". The Journal of Biological Chemistry. 278 (37): 35660–7. doi: 10.1074/jbc.M303549200 . PMID   12842904.
• Tagami H, Ray-Gallet D, Almouzni G, Nakatani Y (Jan 2004). "Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis". Cell. 116 (1): 51–61. doi: 10.1016/S0092-8674(03)01064-X . PMID   14718166. S2CID   13262868.
• Mousson F, Couprie J, Thuret JY, Neumann JM, Mann C, Ochsenbein F (Jul 2004). "1H, 13C and 15N resonance assignments of the conserved core of hAsf1 A". Journal of Biomolecular NMR. 29 (3): 413–4. doi:10.1023/B:JNMR.0000032497.24661.44. PMID   15213445. S2CID   33782636.
• Zhang R, Poustovoitov MV, Ye X, Santos HA, Chen W, Daganzo SM, Erzberger JP, Serebriiskii IG, Canutescu AA, Dunbrack RL, Pehrson JR, Berger JM, Kaufman PD, Adams PD (Jan 2005). "Formation of MacroH2A-containing senescence-associated heterochromatin foci and senescence driven by ASF1a and HIRA". Developmental Cell. 8 (1): 19–30. doi: 10.1016/j.devcel.2004.10.019 . PMID   15621527.
• Groth A, Ray-Gallet D, Quivy JP, Lukas J, Bartek J, Almouzni G (Jan 2005). "Human Asf1 regulates the flow of S phase histones during replicational stress". Molecular Cell. 17 (2): 301–11. doi: 10.1016/j.molcel.2004.12.018 . PMID   15664198.
• Mousson F, Lautrette A, Thuret JY, Agez M, Courbeyrette R, Amigues B, Becker E, Neumann JM, Guerois R, Mann C, Ochsenbein F (Apr 2005). "Structural basis for the interaction of Asf1 with histone H3 and its functional implications". Proceedings of the National Academy of Sciences of the United States of America. 102 (17): 5975–80. Bibcode:2005PNAS..102.5975M. doi: 10.1073/pnas.0500149102 . PMC   1087920 . PMID   15840725.
• Tang Y, Poustovoitov MV, Zhao K, Garfinkel M, Canutescu A, Dunbrack R, Adams PD, Marmorstein R (Oct 2006). "Structure of a human ASF1a-HIRA complex and insights into specificity of histone chaperone complex assembly". Nature Structural & Molecular Biology. 13 (10): 921–9. doi:10.1038/nsmb1147. PMC   2933817 . PMID   16980972.
• Sen SP, De Benedetti A (2006). "TLK1B promotes repair of UV-damaged DNA through chromatin remodeling by Asf1". BMC Molecular Biology. 7: 37. doi: 10.1186/1471-2199-7-37 . PMC   1626478 . PMID   17054786.
• Agez M, Chen J, Guerois R, van Heijenoort C, Thuret JY, Mann C, Ochsenbein F (Feb 2007). "Structure of the histone chaperone ASF1 bound to the histone H3 C-terminal helix and functional insights". Structure. 15 (2): 191–9. doi: 10.1016/j.str.2007.01.002 . PMID   17292837.
• Natsume R, Eitoku M, Akai Y, Sano N, Horikoshi M, Senda T (Mar 2007). "Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4". Nature. 446 (7133): 338–41. Bibcode:2007Natur.446..338N. doi:10.1038/nature05613. PMID   17293877. S2CID   4410753.

External links

• Human ASF1A genome location and ASF1A gene details page in the UCSC Genome Browser .