BioJS

Last updated
BioJS
Initial release2012
Repository
Written in JavaScript
Type Bioinformatics
License Apache 2
Website biojs.net

BioJS is an open-source project for bioinformatics data on the web. [1] Its goal is to develop an open-source library of JavaScript components to visualise biological data. [2] BioJS develops and maintains small building blocks (components) which can be reused by others. For a discovery of available components, BioJS maintains a registry Archived 2018-03-13 at the Wayback Machine .

Contents

History

The first version of BioJS was released in 2012 by John Gomez Carvajal. It was developed as a JavaScript library of web components to represent biological data in web applications. Version 2.0 included a complete redesign of the library and was released in 2014 as a Google Summer of Code project led by Manuel Corpas and developed by David Dao and Sebastian Wilzbach. Since then over 100 people contributed to the project. Currently more than 150 components are available in the BioJS registry.

Selected list of published components

Institutions using BioJS

See also

References

  1. ↑ Corpas; Jimenez, Rafael; Carbon, Seth J; García, Alex; Garcia, Leyla; Goldberg, Tatyana; Gomez, John; Kalderimis, Alexis; Lewis, Suzanna E; Mulvany, Ian; Pawlik, Aleksandra; Rowland, Francis; Salazar, Gustavo; Schreiber, Fabian; Sillitoe, Ian; Spooner, William H; Thanki, Anil; Villaveces, José M; Yachdav, Guy; Hermjakob, Henning (2014). "BioJS: an open source standard for biological visualisation – its status in 2014". F1000Research. 3: 55. doi: 10.12688/f1000research.3-55.v1 . ISSN   2046-1402. PMC   4103492 . PMID   25075290.
  2. ↑ "BioJS Vision and Mission". BioJS. Archived from the original on 10 August 2014. Retrieved 29 August 2014.
  3. ↑ Kalderimis, Alexis; Stepan, Radek; Sullivan, Julie; Lyne, Rachel; Lyne, Michael; Micklem, Gos (2014). "BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs". F1000Research. 3: 51. doi: 10.12688/f1000research.3-51.v1 . ISSN   2046-1402. PMC   3945768 . PMID   24627804.
  4. ↑ Thanki, Anil S.; Caim, Shabhonam; Corpas, Manuel; Davey, Robert P. (2014). "DNAContentViewer a BioJS component to visualise GC/AT Content". F1000Research. 3: 54. doi: 10.12688/f1000research.3-54.v1 . ISSN   2046-1402.
  5. ↑ Garcia, Leyla; Yachdav, Guy; Martin, Maria-Jesus (2014). "FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences". F1000Research. 3: 47. doi: 10.12688/f1000research.3-47.v2 . ISSN   2046-1402. PMC   3983936 . PMID   24741440.
  6. ↑ Yachdav, Guy; Hecht, Maximilian; Pasmanik-Chor, Metsada; Yeheskel, Adva; Rost, Burkhard (2014). "HeatMapViewer: interactive display of 2D data in biology". F1000Research. 3: 48. doi: 10.12688/f1000research.3-48.v1 . ISSN   2046-1402. PMC   4023661 . PMID   24860644.
  7. ↑ Kalderimis, Alexis; Stepan, Radek; Sullivan, Julie; Lyne, Rachel; Lyne, Michael; Micklem, Gos (2014). "BioJS InterMine List Analysis: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints". F1000Research. 3: 45. doi: 10.12688/f1000research.3-45.v1 . ISSN   2046-1402.
  8. ↑ Kalderimis, Alexis; Stepan, Radek; Sullivan, Julie; Lyne, Rachel; Lyne, Michael; Micklem, Gos (2014). "BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints". F1000Research. 3: 46. doi: 10.12688/f1000research.3-46.v1 . ISSN   2046-1402.
  9. ↑ Villaveces, Jose M.; Jimenez, Rafael C.; Habermann, Bianca H. (2014). "KEGGViewer, a BioJS component to visualize KEGG Pathways". F1000Research. 3: 43. doi: 10.12688/f1000research.3-43.v1 . ISSN   2046-1402. PMC   3954160 . PMID   24715980.
  10. ↑ Salazar, Gustavo A.; Meintjes, Ayton; Mulder, Nicola (2014). "PPI layouts: BioJS components for the display of Protein-Protein Interactions". F1000Research. 3: 50. doi: 10.12688/f1000research.3-50.v1 . ISSN   2046-1402. PMC   4103490 . PMID   25075288.
  11. ↑ Villaveces, Jose M.; Jimenez, Rafael C.; Habermann, Bianca H. (2014). "PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers". F1000Research. 3: 44. doi: 10.12688/f1000research.3-44.v1 . ISSN   2046-1402. PMC   4097353 . PMID   25075287.
  12. ↑ Gomez, John; Jimenez, Rafael (2014). "Sequence, a BioJS component for visualising sequences". F1000Research. 3: 52. doi: 10.12688/f1000research.3-52.v1 . ISSN   2046-1402. PMC   4103491 . PMID   25075289.
  13. ↑ Thanki, Anil S.; Jimenez, Rafael C.; Kaithakottil, Gemy G.; Corpas, Manuel; Davey, Robert P. (2014). "wigExplorer, a BioJS component to visualise wig data". F1000Research. 3: 53. doi: 10.12688/f1000research.3-53.v2 . ISSN   2046-1402. PMC   5054804 . PMID   27781080.
  14. ↑ Schreiber, Fabian (2014). "treeWidget: a BioJS component to visualise phylogenetic trees". F1000Research. 3: 49. doi: 10.12688/f1000research.3-49.v1 . ISSN   2046-1402.
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