Christoph Bock

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Christoph Bock
Christoph bock.png
NationalityGerman
Alma mater
Awards
Scientific career
Fields Bioinformatics
Institutions Max Planck Institute for Informatics
Austrian Academy of Sciences
Medical University of Vienna
Broad Institute
Thesis Computational Epigenetics  (2008)
Doctoral advisor Thomas Lengauer [1]
Website cemm.at/research/groups/christoph-bock-group

Christoph Bock is a German bioinformatician and principal investigator at the Research Center for Molecular Medicine (CeMM) of the Austrian Academy of Sciences and a visiting professor at the Medical University of Vienna. [2] [3]

Contents

Education

Bock carried out his undergraduate studies at the University of Mannheim, focusing on computer science and business information, with an emphasis on machine learning. [4]

Bock gained his PhD in 2008 from Saarland University for research carried out at the Max Planck Institute for Informatics on computational epigenetics supervised by Thomas Lengauer. [4] [1]

Research and career

Following his PhD, he undertook postdoctoral research with Alexander Meissner at the Broad Institute, where he contributed to the NIH Roadmap Epigenomics Project. [5]

Bock joined CeMM as a principal investigator in 2012.[ citation needed ] His research focuses on the application of machine learning and biostatistics to computational epigenetics. He is also interested in the application of bioinformatics to epigenetic diagnosis and personalised medicine. [5] Bock's lab has explored integrating technologies to efficiently assess the impact of many genes in gene regulation. His lab has combined CRISPR genome editing with single-cell RNA-seq to create the CROP-seq method, which enables high-throughput analysis of gene regulation. [6]

Beyond his work at CeMM, he has also been a principal investigator of BLUEPRINT, a member organisation of the International Human Epigenome Consortium. [5]

Awards and honors

Bock was awarded the Otto Hahn Medal by the Max Planck Society in 2009: this award recognises outstanding PhD theses. [7]

In 2017, Bock was awarded the Overton Prize by the International Society for Computational Biology, for his significant contributions to computational biology research. [4]

As of 2017, Bock serves on the editorial board of the Genome Biology journal. [8]

Related Research Articles

Epigenome Biological term

An epigenome consists of a record of the chemical changes to the DNA and histone proteins of an organism; these changes can be passed down to an organism's offspring via transgenerational stranded epigenetic inheritance. Changes to the epigenome can result in changes to the structure of chromatin and changes to the function of the genome.

Eugene Myers

Eugene Wimberly "Gene" Myers, Jr. is an American computer scientist and bioinformatician, who is best known for contributing to the early development of the NCBI's BLAST tool for sequence analysis.

Computational epigenetics

Computational epigenetics uses statistical methods and mathematical modelling in epigenetic research. Due to the recent explosion of epigenome datasets, computational methods play an increasing role in all areas of epigenetic research.

The ISCB Overton Prize is a computational biology prize awarded annually for outstanding accomplishment by a scientist in the early to mid stage of his or her career. Laureates have made significant contribution to the field of computational biology either through research, education, service, or a combination of the three.

Steven E. Brenner

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Aviv Regev Bioinformatician

Aviv Regev is a computational biologist and systems biologist and Executive Vice President and Head of Genentech Research and Early Development in Genentech/Roche. She is a core member at the Broad Institute of MIT and Harvard and professor at the Department of Biology of the Massachusetts Institute of Technology. Regev is a pioneer of single cell genomics and of computational and systems biology of gene regulatory circuits. She founded and leads the Human Cell Atlas project, together with Sarah Teichmann.

Alfonso Valencia

Alfonso Valencia is a Spanish biologist, ICREA Professor, current director of the Life Sciences department at Barcelona Supercomputing Center. and of Spanish National Bioinformatics Institute (INB-ISCIII). From 2015-2018, he was President of the International Society for Computational Biology. His research is focused on the study of biomedical systems with computational biology and bioinformatics approaches.

Dana Peer

Dana Pe'er is currently the Chair and Professor in Computational and Systems Biology Program at Sloan Kettering Institute, and regarded as one of the leading researchers in computational systems biology. She was selected as a Howard Hughes Medical Institute (HHMI) Investigator in September, 2021. Previously, she was a professor at Columbia Department of Biological Sciences. Pe'er's research focuses on understanding the organization, function and evolution of molecular networks, particularly how genetic variations alter the regulatory network and how these genetic variations can cause cancer.

Margaret Goodell American scientist

Margaret (“Peggy”) A. Goodell is an American scientist working in the field of stem cell research. Goodell is Chair of the Department of Molecular and Cellular Biology at Baylor College of Medicine, Director of the Stem Cell and Regenerative Medicine (STaR) Center, and a member of the National Academy of Medicine. She is best known for her discovery of a novel method to isolate adult stem cells.

Sarah Teichmann German bioinformatician

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Carnegie Mellon University Computational Biology Department

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Thomas Lengauer

Thomas Lengauer is a German computer scientist and computational biologist.

Janet Kelso South African bioinformatician

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Single cell epigenomics Study of epigenomics in individual cells by single cell sequencing

Single cell epigenomics is the study of epigenomics in individual cells by single cell sequencing. Since 2013, methods have been created including whole-genome single-cell bisulfite sequencing to measure DNA methylation, whole-genome ChIP-sequencing to measure histone modifications, whole-genome ATAC-seq to measure chromatin accessibility and chromosome conformation capture.

Denise P. Barlow British geneticist

Denise P. Barlow was a British geneticist who worked in the field of epigenomics. Barlow was an elected member of European Molecular Biology Organization (EMBO), an honorary professor of genetics at the University of Vienna and recipient of the Erwin Schrödinger Prize of the Austrian Academy of Sciences. In 1991, she discovered the first mammalian imprinted gene, IGF2R, which codes for the insulin-like growth factor.

Christophe Dessimoz

Christophe Dessimoz is a Swiss National Science Foundation (SNSF) Professor at the University of Lausanne, Associate Professor at University College London and a group leader at the Swiss Institute of Bioinformatics. He was awarded the Overton Prize in 2019 for his contributions to computational biology. Starting in April 2022, he will be joint executive director of the SIB Swiss Institute of Bioinformatics, along with Ron Appel.

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Zhiping Weng is the Li Weibo Professor of biomedical research and chair of the program in integrative biology and bioinformatics at the University of Massachusetts Medical School. She was awarded Fellowship of the International Society for Computational Biology (ISCB) in 2020 for outstanding contributions to computational biology and bioinformatics.

References

  1. 1 2 Bock, Christoph (2008). Computational Epigenetics. mpg.de (PhD thesis). Saarland University. OCLC   472653426 . Retrieved 23 July 2017.
  2. "Christoph Bock Group". cemm.at. Retrieved 23 July 2017.
  3. Christoph Bock publications indexed by Google Scholar OOjs UI icon edit-ltr-progressive.svg
  4. 1 2 3 Fogg, Christiana N.; Kovats, Diane E.; Berger, Bonnie (2017). "2017 ISCB Overton Prize awarded to Christoph Bock". PLOS Computational Biology. 13 (6): e1005559. Bibcode:2017PLSCB..13E5559F. doi:10.1371/journal.pcbi.1005559. PMC   5493286 . PMID   28665945.
  5. 1 2 3 "Christoph Bock". www.iscb.org. Retrieved 23 July 2017.
  6. "CRISPR meets single-cell sequencing in new screening method" . Retrieved 23 July 2017.
  7. "Christoph Bock". www.medical-epigenomics.org. Retrieved 23 July 2017.
  8. "Genome Biology". Genome Biology. Retrieved 23 July 2017.