Hafniaceae

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Hafniaceae
Photo culture hafnia alvei.jpg
Image of cultured Hafnia Alvei under a microscope.
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Domain: Bacteria
Phylum: Pseudomonadota
Class: Gammaproteobacteria
Order: Enterobacterales
Family: Hafniaceae
Adeolu et al., 2016
Genera

The Hafniaceae are a family of Gram-negative bacteria. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota. Genera in this family include the type genus Hafnia , along with Edwardsiella and Obesumbacterium . [1]

Contents

The name Hafniaceae is derived from the Latin term Hafnia, referring the type genus of the family and the suffix "-aceae", an ending used to denote a family. Together, Hafniaceae refers to a family whose nomenclatural type is the genus Hafnia. [1]

Biochemical Characteristics and Molecular Signatures

Members are catalase-positive, oxidase-negative, and negative for lysine decarboxylase. These bacteria are also able to grow on MacConkey media, and are capable of reducing nitrate. [1]

Four conserved signature indels (CSIs) were identified for this family in the proteins two-component system response regulator GIrR, glucose-1-phosphate adenylyltransferase, transcriptional activator NhaR, and the hybrid sensor histidine kinase/response regulator. [1] These molecular signatures were identified through genomic analyses and serves as a reliable molecular means to distinguish members of this family from other families within the order Enterobacterales and all other bacteria.

Historical Systematics and Current Taxonomy

Hafniaceae, as of 2021, contains three validly published genera. [2] Members of this family were originally members of the family Enterobacteriaceae , a large phylogenetically unrelated group of species with distinct biochemical characteristics and different ecological niches. The original assignment of species into the family Enterobacteriaceae was largely based on 16S rRNA genome sequence analyses, which is known to have low discriminatory power and the results of which changes depends on the algorithm and organism information used. Despite this, the analyses still exhibited polyphyletic branching, indicating the presence of distinct subgroups within the family. [3]

In 2016, Adeolu et al. proposed the division of Enterobacteriaceae into 7 novel families based on comparative genomic analyses and the branching pattern of various phylogenetic trees constructed from conserved genome sequences, 16S rRNA sequences and multilocus sequence analyses. Molecular markers, specifically conserved signature indels, specific to this family were also identified as evidence supporting the division independent of phylogenetic trees. [1]

Related Research Articles

<span class="mw-page-title-main">Enterobacteriaceae</span> Family of bacteria

Enterobacteriaceae is a large family of Gram-negative bacteria. It includes over 30 genera and more than 100 species. Its classification above the level of family is still a subject of debate, but one classification places it in the order Enterobacterales of the class Gammaproteobacteria in the phylum Pseudomonadota. In 2016, the description and members of this family were emended based on comparative genomic analyses by Adeolu et al.

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<span class="mw-page-title-main">Enterobacterales</span> Order of gram-negative bacteria

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<span class="mw-page-title-main">Pasteurellaceae</span> Family of bacteria

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<i>Diplorickettsia massiliensis</i> Species of bacterium

Diplorickettsia massiliensis species is an obligate intracellular, gram negative bacterium isolated from Ixodes ricinus ticks collected in Slovak republic forest geographically from southeastern part of Rovinka in 2006. They belong to the gammaproteobacteria class and are non endospore forming, small rods usually grouped in pairs. The bacteria are non-motile, and 16S rRNA, rpoB, parC and ftsY gene sequencing indicate that this bacterium is clearly different from all other recognized species. An initial phylogenetic analysis based on 16S rRNA, clustered D. massiliensis with Rickettsiella grylli. Because of its low 16S rDNA similarity (94%) with R. grylli, it was classified as a new genus Diplorickettsia into the family Coxiellaceae and the order Legionellales. D. massiliensis strain 20B was identified in three patients with suspected tick-borne infections that exhibited a specific seroconversion. The evidence of infection was further reconfirmed by using PCR-assay, thus established its role as a human pathogen and later whole genome sequencing was performed.

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<span class="mw-page-title-main">Yersiniaceae</span> Family of bacteria

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<span class="mw-page-title-main">Erwiniaceae</span> Family of bacteria

The Erwiniaceae are a family of Gram-negative bacteria which includes a number of plant pathogens and insect endosymbionts. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota. The type genus of this family is Erwinia.

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<span class="mw-page-title-main">Morganellaceae</span> Family of bacteria

The Morganellaceae are a family of Gram-negative bacteria that include some important human pathogens formerly classified as Enterobacteriaceae. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota. Genera in this family include the type genus Morganella, along with Arsenophonus, Cosenzaea, Moellerella, Photorhabdus, Proteus, Providencia and Xenorhabdus.

The Budviciaceae are a family of Gram-negative bacteria. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota. The type genus of this family is Budvicia.

<span class="mw-page-title-main">Cytobacillus</span> Genus of rod-shaped bacteria

Cytobacillus is a genus of rod-shaped bacteria that stain either Gram-positive or Gram-variable in the family Bacillaceae within the order Bacillales. The type species for this genus is Cytobacillus firmus.

Niallia is a genus of Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Niallia circulans.

Siminovitchia is a genus of Gram-Positive or Gram-negative rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Siminovitchia fortii.

Alkalicoccus is a genus of Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Alkalicoccus saliphilus.

Metalysinibacillus is a genus of Gram-positive rod-shaped bacteria in the family Caryophanaceae from the order Caryophanales. The type species of this genus is Metalysinibacillus jejuensis.

Planococcus is a genus of Gram-Positive or Gram-variable, cocci or short rod-shaped bacteria in the family Caryophanaceae from the order Caryophanales. The type species of this genus is Planococcus citreus.

Natrialbales is an order of halophilic, chemoorganotrophic archaea within the class Haloarchaea. The type genus of this order is Natrialba.

Haloferacales is an order of halophilic, chemoorganotrophic or heterotrophic archaea within the class Haloarchaea. The type genus of this order is Haloferax.

References

  1. 1 2 3 4 5 Adeolu, M.; et al. (2016). "Genome based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov". Int. J. Syst. Evol. Microbiol.
  2. "Family: Hafniaceae". lpsn.dsmz.de. Retrieved 2021-06-05.
  3. Francino, M. Pilar; Santos, Scott R.; Ochman, Howard (2006), "Phylogenetic Relationships of Bacteria with Special Reference to Endosymbionts and Enteric Species", The Prokaryotes, New York, NY: Springer New York, pp. 41–59, ISBN   978-0-387-25496-8 , retrieved 2021-06-02