Computational neuroscience is a branch of neuroscience which employs mathematics, computer science, theoretical analysis and abstractions of the brain to understand the principles that govern the development, structure, physiology and cognitive abilities of the nervous system.
The Blue Brain Project is a Swiss brain research initiative that aims to create a digital reconstruction of the mouse brain. The project was founded in May 2005 by the Brain Mind Institute of École Polytechnique Fédérale de Lausanne (EPFL) in Switzerland. Its mission is to use biologically-detailed digital reconstructions and simulations of the mammalian brain to identify the fundamental principles of brain structure and function.
Brain mapping is a set of neuroscience techniques predicated on the mapping of (biological) quantities or properties onto spatial representations of the brain resulting in maps.
A connectome is a comprehensive map of neural connections in the brain, and may be thought of as its "wiring diagram". An organism's nervous system is made up of neurons which communicate through synapses. A connectome is constructed by tracing the neuron in a nervous system and mapping where neurons are connected through synapses.
Connectomics is the production and study of connectomes: comprehensive maps of connections within an organism's nervous system. More generally, it can be thought of as the study of neuronal wiring diagrams with a focus on how structural connectivity, individual synapses, cellular morphology, and cellular ultrastructure contribute to the make up of a network. The nervous system is a network made of billions of connections and these connections are responsible for our thoughts, emotions, actions, memories, function and dysfunction. Therefore, the study of connectomics aims to advance our understanding of mental health and cognition by understanding how cells in the nervous system are connected and communicate. Because these structures are extremely complex, methods within this field use a high-throughput application of functional and structural neural imaging, most commonly magnetic resonance imaging (MRI), electron microscopy, and histological techniques in order to increase the speed, efficiency, and resolution of these nervous system maps. To date, tens of large scale datasets have been collected spanning the nervous system including the various areas of cortex, cerebellum, the retina, the peripheral nervous system and neuromuscular junctions.
The Human Connectome Project (HCP) is a five-year project sponsored by sixteen components of the National Institutes of Health, split between two consortia of research institutions. The project was launched in July 2009 as the first of three Grand Challenges of the NIH's Blueprint for Neuroscience Research. On September 15, 2010, the NIH announced that it would award two grants: $30 million over five years to a consortium led by Washington University in St. Louis and the University of Minnesota, with strong contributions from University of Oxford (FMRIB) and $8.5 million over three years to a consortium led by Harvard University, Massachusetts General Hospital and the University of California Los Angeles.
Connectograms are graphical representations of connectomics, the field of study dedicated to mapping and interpreting all of the white matter fiber connections in the human brain. These circular graphs based on diffusion MRI data utilize graph theory to demonstrate the white matter connections and cortical characteristics for single structures, single subjects, or populations.
A brain atlas is composed of serial sections along different anatomical planes of the healthy or diseased developing or adult animal or human brain where each relevant brain structure is assigned a number of coordinates to define its outline or volume. Brain atlases are contiguous, comprehensive results of visual brain mapping and may include anatomical, genetic or functional features. A functional brain atlas is made up of regions of interest, where these regions are typically defined as spatially contiguous and functionally coherent patches of gray matter.
The Budapest Reference Connectome server computes the frequently appearing anatomical brain connections of 418 healthy subjects. It has been prepared from diffusion MRI datasets of the Human Connectome Project into a reference connectome, which can be downloaded in CSV and GraphML formats and visualized on the site in 3D.
Large-scale brain networks are collections of widespread brain regions showing functional connectivity by statistical analysis of the fMRI BOLD signal or other recording methods such as EEG, PET and MEG. An emerging paradigm in neuroscience is that cognitive tasks are performed not by individual brain regions working in isolation but by networks consisting of several discrete brain regions that are said to be "functionally connected". Functional connectivity networks may be found using algorithms such as cluster analysis, spatial independent component analysis (ICA), seed based, and others. Synchronized brain regions may also be identified using long-range synchronization of the EEG, MEG, or other dynamic brain signals.
Russell "Russ" Alan Poldrack is an American psychologist and neuroscientist. He is a professor of psychology at Stanford University, associate director of Stanford Data Science, member of the Stanford Neuroscience Institute and director of the Stanford Center for Reproducible Neuroscience and the SDS Center for Open and Reproducible Science.
Viktor K. Jirsa is a German physicist and neuroscientist, director of research at the Centre national de la recherche scientifique (CNRS), director of the Institut de Neuroscience des Systèmes and co-director of the Fédération Hospitalo-Universitaire (FHU) EPINEXT "Epilepsy and Disorders of Neuronal Excitability" in Marseille, France. He is workpackage leader in the Epinov project funded in the context of the RHU3 call and coordinated by Fabrice Bartolomei.
A residual neural network is a deep learning architecture in which the weight layers learn residual functions with reference to the layer inputs. It was developed in 2015 for image recognition and won that year's ImageNet Large Scale Visual Recognition Challenge.
Jeff W. Lichtman is an American neuroscientist. He is the Jeremy R. Knowles Professor of Molecular and Cellular Biology and Santiago Ramón y Cajal Professor of Arts and Sciences at Harvard University. He is best known for his pioneering work developing the neuroimaging connectomic technique known as Brainbow.
David C. Van Essen is an American neuroscientist specializing in neurobiology and studies the structure, function, development, connectivity and evolution of the cerebral cortex of humans and nonhuman relatives. After over two decades of teaching at the Washington University in St. Louis School of Medicine, he currently serves as an Alumni Endowed Professor of Neuroscience and maintains an active laboratory. Van Essen has held numerous positions, including Editor-in-Chief of the Journal of Neuroscience, Secretary of the Society for Neuroscience, and the President of the Society for Neuroscience from 2006 to 2007. Additionally, Van Essen has received numerous awards for his efforts in education and science, including the Krieg Cortical Discoverer Award from the Cajal Club in 2002, the Peter Raven Lifetime Achievement Award from St. Louis Academy of Science in 2007, and the Second Century Award in 2015 and the Distinguished Educator Award in 2017, both from Washington University School of Medicine.
Network neuroscience is an approach to understanding the structure and function of the human brain through an approach of network science, through the paradigm of graph theory. A network is a connection of many brain regions that interact with each other to give rise to a particular function. Network Neuroscience is a broad field that studies the brain in an integrative way by recording, analyzing, and mapping the brain in various ways. The field studies the brain at multiple scales of analysis to ultimately explain brain systems, behavior, and dysfunction of behavior in psychiatric and neurological diseases. Network neuroscience provides an important theoretical base for understanding neurobiological systems at multiple scales of analysis.
Marta Zlatic is a Croatian neuroscientist who is group leader at the MRC Laboratory of Molecular Biology in Cambridge, UK. Her research investigates how neural circuits generate behaviour.
Dimitri Van De Ville is a Swiss and Belgian computer scientist and neuroscientist specialized in dynamical and network aspects of brain activity. He is a professor of bioengineering at EPFL and the head of the Medical Image Processing Laboratory at EPFL's School of Engineering.
