LSM5

LSM5
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 3JCR
Identifiers
Aliases	LSM5 , YER146W, LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
External IDs	OMIM: 607285 MGI: 1913623 HomoloGene: 40833 GeneCards: LSM5
Gene location (Human) Chr. Chromosome 7 (human) [1] Band 7p14.3 Start 32,485,338 bp [1] End 32,495,283 bp [1]
Gene location (Mouse) Chr. Chromosome 6 (mouse) [2] Band 6|6 B3 Start 56,678,048 bp [2] End 56,681,695 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in ganglionic eminence human penis rectum superior surface of tongue body of pancreas jejunum pylorus bone marrow synovial joint body of tongue Top expressed in morula yolk sac thymus neural tube ganglionic eminence ileum mesencephalon duodenum secondary oocyte stomach More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein binding RNA binding Cellular component U6 snRNP cytosol Lsm1-7-Pat1 complex U4/U6 x U5 tri-snRNP complex spliceosomal complex nucleus nucleoplasm U2-type precatalytic spliceosome Lsm2-8 complex Biological process nuclear-transcribed mRNA catabolic process mRNA splicing, via spliceosome mRNA processing exonucleolytic catabolism of deadenylated mRNA RNA splicing response to bacterium Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 23658 66373 Ensembl ENSG00000106355 ENSMUSG00000091625 UniProt Q9Y4Y9 P62322 RefSeq (mRNA) NM_001130710 NM_001139499 NM_012322 NM_025520 RefSeq (protein) NP_001124182 NP_001132971 NP_036454 NP_079796 Location (UCSC) Chr 7: 32.49 – 32.5 Mb Chr 6: 56.68 – 56.68 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

U6 snRNA-associated Sm-like protein LSm5 is a protein that in humans is encoded by the LSM5 gene. ^{[5] [6] [7]}

Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; MIM 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM] ^[7]

References

1. GRCh38: Ensembl release 89: ENSG00000106355 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000091625 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Salgado-Garrido J, Bragado-Nilsson E, Kandels-Lewis S, Seraphin B (Aug 1999). "Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin". EMBO J. 18 (12): 3451–62. doi:10.1093/emboj/18.12.3451. PMC   1171424 . PMID   10369684.
6. Ingelfinger D, Arndt-Jovin DJ, Luhrmann R, Achsel T (Jan 2003). "The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci". RNA. 8 (12): 1489–501. doi:10.1017/S1355838202021726. PMC   1370355 . PMID   12515382.
7. "Entrez Gene: LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)".

Further reading

• Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Lehner B, Sanderson CM (2004). "A Protein Interaction Framework for Human mRNA Degradation". Genome Res. 14 (7): 1315–23. doi:10.1101/gr.2122004. PMC   442147 . PMID   15231747.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID   14702039.
• Scherer SW, Cheung J, MacDonald JR, et al. (2003). "Human Chromosome 7: DNA Sequence and Biology". Science. 300 (5620): 767–72. Bibcode:2003Sci...300..767S. doi:10.1126/science.1083423. PMC   2882961 . PMID   12690205.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Eystathioy T, Peebles CL, Hamel JC, et al. (2002). "Autoantibody to hLSm4 and the heptameric LSm complex in anti-Sm sera". Arthritis Rheum. 46 (3): 726–34. doi: 10.1002/art.10220 . PMID   11920408.
• Suzuki H, Fukunishi Y, Kagawa I, et al. (2001). "Protein–Protein Interaction Panel Using Mouse Full-Length cDNAs". Genome Res. 11 (10): 1758–65. doi:10.1101/gr.180101. PMC   311163 . PMID   11591653.
• Friesen WJ, Dreyfuss G (2000). "Specific sequences of the Sm and Sm-like (Lsm) proteins mediate their interaction with the spinal muscular atrophy disease gene product (SMN)". J. Biol. Chem. 275 (34): 26370–5. doi: 10.1074/jbc.M003299200 . PMID   10851237.
• Achsel T, Brahms H, Kastner B, et al. (1999). "A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro". EMBO J. 18 (20): 5789–802. doi:10.1093/emboj/18.20.5789. PMC   1171645 . PMID   10523320.