Chromosome 7

Last updated
Chromosome 7
Human male karyotpe high resolution - Chromosome 7 cropped.png
Human chromosome 7 pair after G-banding.
One is from mother, one is from father.
Human male karyotpe high resolution - Chromosome 7.png
Chromosome 7 pair
in human male karyogram.
Features
Length (bp)160,567,428 bp
(CHM13)
No. of genes 862 (CCDS) [1]
Type Autosome
Centromere position Submetacentric [2]
(60.1 Mbp [3] )
Complete gene lists
CCDS Gene list
HGNC Gene list
UniProt Gene list
NCBI Gene list
External map viewers
Ensembl Chromosome 7
Entrez Chromosome 7
NCBI Chromosome 7
UCSC Chromosome 7
Full DNA sequences
RefSeq NC_000007 (FASTA)
GenBank CM000669 (FASTA)

Chromosome 7 is one of the 23 pairs of chromosomes in humans, who normally have two copies of this chromosome. Chromosome 7 spans about 160 million [4] base pairs (the building material of DNA) and represents between 5 and 5.5 percent of the total DNA in cells.

Contents

Genes

Number of genes

The following are some of the gene count estimates of human chromosome 7. Because researchers use different approaches to genome annotation their predictions of the number of genes on each chromosome varies (for technical details, see gene prediction). Among various projects, the collaborative consensus coding sequence project (CCDS) takes an extremely conservative strategy. So CCDS's gene number prediction represents a lower bound on the total number of human protein-coding genes. [5]

Estimated by Protein-coding genes Non-coding RNA genes Pseudogenes SourceRelease date
CCDS 862 [1] 2016-09-08
HGNC 870245703 [6] 2017-05-12
Ensembl 984973889 [7] 2017-03-29
UniProt 944 [8] 2018-02-28
NCBI 948905933 [9] [10] [11] 2017-05-19

Gene list

The following is a partial list of genes on human chromosome 7. For complete list, see the link in the infobox on the right.

  • AASS: encoding enzyme Alpha-aminoadipic semialdehyde synthase, mitochondrial
  • ACTR3B: actin-related protein 3B
  • AEBP1: AE binding protein 1
  • AGK: encoding enzyme mitochondrial acylglycerol kinase
  • ARHGEF35: encoding protein Rho guanine nucleotide exchange factor (GEF) 35
  • AVL9: encoding protein Avl9 cell migration associated
  • BCAP29: B-cell receptor-associated protein 29
  • BCC6: encoding protein basal cell carcinoma, susceptibility to, 6
  • BRAT1: BRCA1-associated ATM activator 1
  • C7orf25: protein UPF0415
  • C7orf31: chromosome 7 open reading frame 31
  • CALU: Calumenin
  • CCL24: encoding protein C-C motif chemokine ligand 24
  • CDCA7L: Cell division cycle-associated 7-like protein
  • CFTR: anion channel membrane protein
  • CNOT4: CCR4-NOT transcription complex, subunit 4
  • CPED1: cadherin like and PC-esterase domain containing 1
  • CPVL: carboxypeptidase, vitellogenic like
  • CROT: Peroxisomal carnitine O-octanoyltransferase
  • DDX56: DEAD-box helicase 56
  • DMTF1: Cyclin D binding myb like transcription factor 1
  • ECOP: EGFR-coamplified and overexpressed protein
  • EEPD1: encoding protein Endonuclease/exonuclease/phosphatase family domain containing 1
  • EGFR-AS1: encoding protein EGFR antisense RNA 1
  • EZH2: encoding enzyme histone-lysine N-methyltransferase for histone h3 lysine 27
  • FAM71F2: family with sequence similarity 71 member F2
  • FAM185A: family with sequence similarity 185 member A
  • FAM200A: family with sequence similarity 200 member A
  • FBXO24: F-box only protein 24
  • GBAS: Glioblastoma amplified sequence; Protein NipSnap homolog 2
  • GET4: encoding protein GET4
  • GLCCI1: Glucocorticoid-induced transcript 1 protein
  • HOXA@: encoding protein Homeobox a cluster
  • HOXA10-HOXA9: readthrough gene unlikely to produce a protein product
  • HPC4: Prostate cancer, hereditary, 4
  • ICA1: islet cell autoantigen 1
  • ING3: inhibitor of growth protein 3
  • INTS1: encoding protein Integrator complex subunit 1
  • IQCE: IQ domain-containing protein E
  • KDM7A: encoding protein Lysine demethylase 7A
  • LCHN: protein encoded by the KIAA1147 gene
  • LHFPL3: LHFPL tetraspan subfamily member 3
  • LINC01003: encoding long intergenic non-protein coding RNA 1003
  • LRRC17: leucine-rich repeat containing protein 17
  • LRRC61: encoding protein Leucine rich repeat containing 61
  • LRRD1: encoding protein Leucine-rich repeats and death domain containing 1
  • LSM5: U6 small nuclear RNA and mRNA degradation associated
  • LUC7L2: putative RNA-binding protein Luc7-like 2
  • MACC1: encoding protein Macc1, met transcriptional regulator
  • MAP11: encoding protein Microtubule-associated protein 11
  • MDFIC: MyoD family inhibitor domain containing
  • METTL2B: methyltransferase-like protein 2B
  • MINDY4: MINDY lysine 48 deubiquitinase 4
  • MIR93: encoding protein MicroRNA 93
  • MIR148A: encoding protein MicroRNA 148a
  • MIR196B: encoding protein MicroRNA 196b
  • MIR548F4: encoding protein MicroRNA 548f-4
  • MIR96: microRNA 96
  • MOSPD3: motile sperm domain containing 3
  • MTERF: mitochondrial transcription termination factor 1
  • MTRNR2L6: encoding protein MT-RNR2-like 6
  • NOM1: nucleolar protein with MIF4G domain 1
  • NUDCD3: NudC domain-containing protein 3
  • NUPL2: nucleoporin-like 2
  • NXPH1: neurexophilin-1
  • OPN1SW: blue-sensitive opsin
  • PDAP1: PDGFA associated protein 1
  • PHTF2: putative homeodomain transcription factor 2
  • PLOD3: procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
  • POM121: POM121 transmembrane nucleoporin
  • POP7: ribonuclease P protein subunit p20
  • PPP1R17: protein phosphatase 1 regulatory subunit 17
  • PSPH: phosphoserine phosphatase
  • PURB: purine-rich element binding protein B
  • PVRIG: encoding protein Poliovirus receptor related immunoglobulin domain containing
  • RADIL: ras-associating and dilute domain-containing protein
  • RASA4B: encoding protein RAS p21 protein activator 4B
  • RCP9: DNA-directed RNA polymerase III subunit RCP9
  • REPIN1: replication initiator 1
  • RNF216-IT1: encoding protein RNF216 intronic transcript 1
  • SCIN: scinderin
  • SCRN1: secernin 1
  • SEMA3E: encoding protein Semaphorin 3E
  • SOSTDC1: sclerostin domain containing 1
  • SPDYE1: speedy/RINGO cell cycle regulator family member E1
  • SSC4D: scavenger receptor cysteine rich family member with 4 domains
  • STEAP1: six transmembrane epithelial antigen of the prostate 1
  • STEAP2: six transmembrane epithelial antigen of the prostate 2
  • STEAP4: six transmembrane epithelial antigen of the prostate 4
  • STYXL1: serine/threonine/tyrosine-interacting-like protein 1
  • SUMF2: sulatase-modifying factor 2
  • SYPL1: synaptophysin-like protein 1
  • TARP: TCR gamma alternate reading frame protein
  • TBRG4: transforming growth factor beta regulator 4
  • TECPR1 encoding protein Tectonin beta-propeller repeat containing 1
  • TMED4: transmembrane emp24 domain-containing protein 4
  • TMEM130: transmembrane protein 130
  • TMEM196 encoding protein Transmembrane protein 196
  • TMEM243: encoding protein Transmembrane protein 243
  • TNRC18: encoding protein Trinucleotide repeat containing 18
  • TRBC1 encoding protein T cell receptor beta constant 1
  • TRBC2 encoding protein T cell receptor beta constant 2
  • TRGV1: encoding protein T cell receptor gamma variable 1 (non-functional)
  • TRIL: TRL4 interactor with leucine rich repeats
  • UPK3B: encoding protein Uroplakin 3B
  • URG4: up-regulated gene 4
  • WBSCR17: polypeptide N-acetylgalactosaminyltransferase 17
  • WDR91 encoding protein WD repeat domain 91
  • WEE2-AS1: encoding protein WEE2 antisense RNA 1
  • XKR5: encoding protein XK, Kell blood group complex subunit-related family, member 5
  • ZC3HAV1: zinc finger CCCH-type containing
  • ZC3HC1: zinc finger C3HC-type containing 1
  • ZNF106: encoding protein Zinc finger protein 106
  • ZNF117: encoding protein Zinc finger protein 117
  • ZNF394: zinc finger protein 394
  • ZNF398: zinc finger protein 398
  • ZNF679: encoding protein Zinc finger protein 679
  • ZNF716: encoding protein Zinc finger protein 716
  • ZNF727: encoding protein Zinc finger protein 727
  • ZNF786: encoding protein Zinc finger protein 786
  • ZNF853: encoding protein Zinc finger protein 853
  • ZKSCAN1: zinc finger protein with KRAB and SCAN domains 1
  • ZKSCAN5: zinc finger protein with KRAB and SCAN domains 5
  • ZMIZ2: zinc finger MIZ domain-containing protein 2
  • ZNF277P: zinc finger protein 277
  • ZRF1: DnaJ heat shock protein family (Hsp40) member C2
  • ZSCAN21: zinc finger and SCAN domain-containing protein 21

Diseases and disorders

The following diseases are some of those related to genes on chromosome 7:

Chromosomal disorders

The following conditions are caused by changes in the structure or number of copies of chromosome 7:

While a few of the specific genes related to Williams syndrome have been identified, the relationship between most of the genes in the deleted region and the signs and symptoms of Williams syndrome is unknown.

Cytogenetic band

G-banding ideograms of human chromosome 7
Human chromosome 7 ideogram vertical.svg
G-banding ideogram of human chromosome 7 in resolution 850 bphs. Band length in this diagram is proportional to base-pair length. This type of ideogram is generally used in genome browsers (e.g. Ensembl, UCSC Genome Browser).
Human chromosome 07 - 400 550 850 bphs.png
G-banding patterns of human chromosome 7 in three different resolutions (400, [25] 550 [26] and 850 [3] ). Band length in this diagram is based on the ideograms from ISCN (2013). [27] This type of ideogram represents actual relative band length observed under a microscope at the different moments during the mitotic process. [28]
G-bands of human chromosome 7 in resolution 850 bphs [3]
Chr.Arm [29] Band [30] ISCN
start [31]
ISCN
stop [31]
Basepair
start
Basepair
stop
Stain [32] Density
7p22.3022712,800,000gneg
7p22.22273972,800,0014,500,000gpos25
7p22.13976104,500,0017,200,000gneg
7p21.36109087,200,00113,700,000gpos100
7p21.290896513,700,00116,500,000gneg
7p21.1965112116,500,00120,900,000gpos100
7p15.31121141920,900,00125,500,000gneg
7p15.21419158925,500,00127,900,000gpos50
7p15.11589181627,900,00128,800,000gneg
7p14.31816198628,800,00134,900,000gpos75
7p14.21986204334,900,00137,100,000gneg
7p14.12043232737,100,00143,300,000gpos75
7p132327263943,300,00145,400,000gneg
7p12.32639283845,400,00149,000,000gpos75
7p12.22838290949,000,00150,500,000gneg
7p12.12909309350,500,00153,900,000gpos75
7p11.23093330653,900,00158,100,000gneg
7p11.13306344858,100,00160,100,000acen
7q11.13448368960,100,00162,100,000acen
7q11.213689397362,100,00167,500,000gneg
7q11.223973417167,500,00172,700,000gpos50
7q11.234171459772,700,00177,900,000gneg
7q21.114597499477,900,00186,700,000gpos100
7q21.124994510886,700,00188,500,000gneg
7q21.135108529288,500,00191,500,000gpos75
7q21.25292540691,500,00193,300,000gneg
7q21.35406566193,300,00198,400,000gpos75
7q22.15661612998,400,001104,200,000gneg
7q22.261296300104,200,001104,900,000gpos50
7q22.363006470104,900,001107,800,000gneg
7q31.164706683107,800,001115,000,000gpos75
7q31.266836867115,000,001117,700,000gneg
7q31.3168677094117,700,001121,400,000gpos75
7q31.3270947208121,400,001124,100,000gneg
7q31.3372087364124,100,001127,500,000gpos75
7q32.173647449127,500,001129,600,000gneg
7q32.274497576129,600,001130,800,000gpos25
7q32.375767803130,800,001132,900,000gneg
7q3378038031132,900,001138,500,000gpos50
7q3480318371138,500,001143,400,000gneg
7q3583718612143,400,001148,200,000gpos75
7q36.186128910148,200,001152,800,000gneg
7q36.289109080152,800,001155,200,000gpos25
7q36.390809350155,200,001159,345,973gneg

Novels

In the novel Performance Anomalies, researchers at Stanford University identify mutations in the long (q) arm of chromosome 7 as underlying the accelerated nervous system of the spy protagonist Cono, [33] who receives the moniker Cono 7Q

Related Research Articles

<span class="mw-page-title-main">X chromosome</span> Sex chromosome present in both sexes in the XY and X0 sex-determination systems

The X chromosome is one of the two sex chromosomes in many organisms, including mammals, and is found in both males and females. It is a part of the XY sex-determination system and XO sex-determination system. The X chromosome was named for its unique properties by early researchers, which resulted in the naming of its counterpart Y chromosome, for the next letter in the alphabet, following its subsequent discovery.

<span class="mw-page-title-main">Chromosome 21</span> Human chromosome

Chromosome 21 is one of the 23 pairs of chromosomes in humans. Chromosome 21 is both the smallest human autosome and chromosome, with 45 million base pairs representing about 1.5 percent of the total DNA in cells. Most people have two copies of chromosome 21, while those with three copies of chromosome 21 have Down syndrome, also called "trisomy 21".

<span class="mw-page-title-main">Chromosome 1</span> Human chromosome

Chromosome 1 is the designation for the largest human chromosome. Humans have two copies of chromosome 1, as they do with all of the autosomes, which are the non-sex chromosomes. Chromosome 1 spans about 249 million nucleotide base pairs, which are the basic units of information for DNA. It represents about 8% of the total DNA in human cells.

<span class="mw-page-title-main">Chromosome 6</span> Human chromosome

Chromosome 6 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 6 spans more than 172 million base pairs and represents between 5.5 and 6% of the total DNA in cells. It contains the major histocompatibility complex, which contains over 100 genes related to the immune response, and plays a vital role in organ transplantation.

<span class="mw-page-title-main">Chromosome 13</span> Human chromosome

Chromosome 13 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 13 spans about 113 million base pairs and represents between 3.5 and 4% of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 2</span> Human chromosome

Chromosome 2 is one of the twenty-three pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 2 is the second-largest human chromosome, spanning more than 242 million base pairs and representing almost eight percent of the total DNA in human cells.

<span class="mw-page-title-main">Chromosome 3</span> Human chromosome

Chromosome 3 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 3 spans 201 million base pairs and represents about 6.5 percent of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 4</span> Human chromosome

Chromosome 4 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 4 spans more than 193 million base pairs and represents between 6 and 6.5 percent of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 5</span> Human chromosome

Chromosome 5 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 5 spans about 182 million base pairs and represents almost 6% of the total DNA in cells. Chromosome 5 is the 5th largest human chromosome, yet has one of the lowest gene densities. This is partially explained by numerous gene-poor regions that display a remarkable degree of non-coding and syntenic conservation with non-mammalian vertebrates, suggesting they are functionally constrained.

<span class="mw-page-title-main">Chromosome 8</span> Human chromosome

Chromosome 8 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 8 spans about 146 million base pairs and represents between 4.5 and 5.0% of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 9</span> Human chromosome

Chromosome 9 is one of the 23 pairs of chromosomes in humans. Humans normally have two copies of this chromosome, as they normally do with all chromosomes. Chromosome 9 spans about 150 million base pairs of nucleic acids and represents between 4.0 and 4.5% of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 10</span> Human chromosome

Chromosome 10 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 10 spans about 134 million base pairs and represents between 4 and 4.5 percent of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 12</span> Human chromosome

Chromosome 12 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 12 spans about 133 million base pairs and represents between 4 and 4.5 percent of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 14</span> Human chromosome

Chromosome 14 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 14 spans about 101 million base pairs and represents between 3 and 3.5% of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 15</span> Human chromosome

Chromosome 15 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 15 spans about 99.7 million base pairs and represents between 3% and 3.5% of the total DNA in cells. Chromosome 15 is an acrocentric chromosome, with a very small short arm, which contains few protein coding genes among its 19 million base pairs. It has a larger long arm that is gene rich, spanning about 83 million base pairs.

<span class="mw-page-title-main">Chromosome 16</span> Human chromosome

Chromosome 16 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 16 spans about 96 million base pairs and represents just under 3% of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 17</span> Human chromosome

Chromosome 17 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 17 spans more than 84 million base pairs and represents between 2.5 and 3% of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 18</span> Human chromosome

Chromosome 18 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 18 spans about 80 million base pairs and represents about 2.5 percent of the total DNA in cells.

<span class="mw-page-title-main">Chromosome 19</span> Human chromosome

Chromosome 19 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 19 spans more than 61.7 million base pairs, the building material of DNA. It is considered the most gene-rich chromosome containing roughly 1,500 genes, despite accounting for only 2 percent of the human genome.

<span class="mw-page-title-main">Chromosome 20</span> Human chromosome

Chromosome 20 is one of the 23 pairs of chromosomes in humans. Chromosome 20 spans around 66 million base pairs and represents between 2 and 2.5 percent of the total DNA in cells. Chromosome 20 was fully sequenced in 2001 and was reported to contain over 59 million base pairs. Since then, due to sequencing improvements and fixes, the length of chromosome 20 has been updated to just over 66 million base pairs.

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  27. International Standing Committee on Human Cytogenetic Nomenclature (2013). ISCN 2013: An International System for Human Cytogenetic Nomenclature (2013). Karger Medical and Scientific Publishers. ISBN   978-3-318-02253-7.
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  29. "p": Short arm; "q": Long arm.
  30. For cytogenetic banding nomenclature, see article locus.
  31. 1 2 These values (ISCN start/stop) are based on the length of bands/ideograms from the ISCN book, An International System for Human Cytogenetic Nomenclature (2013). Arbitrary unit.
  32. gpos: Region which is positively stained by G banding, generally AT-rich and gene poor; gneg: Region which is negatively stained by G banding, generally CG-rich and gene rich; acen Centromere. var: Variable region; stalk: Stalk.
  33. Lee, Victor Robert (2013-01-15). Performance Anomalies: A Novel. Perimeter Six Press. ISBN   9781938409202.

Further reading