NDUFA12

NDUFA12
Identifiers
Aliases	NDUFA12 , B17.2, DAP13, NADH:ubiquinone oxidoreductase subunit A12, MC1DN23
External IDs	OMIM: 614530 MGI: 1913664 HomoloGene: 10314 GeneCards: NDUFA12
Gene location (Human) Chr. Chromosome 12 (human) [1] Band 12q22 Start 94,895,297 bp [1] End 95,003,748 bp [1]
Gene location (Mouse) Chr. Chromosome 10 (mouse) [2] Band 10|10 C2 Start 94,034,582 bp [2] End 94,057,305 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in tibialis anterior muscle right ventricle deltoid muscle vastus lateralis muscle biceps brachii body of tongue palpebral conjunctiva gastrocnemius muscle pons middle temporal gyrus Top expressed in quadriceps femoris muscle proximal tubule skeletal muscle tissue yolk sac neural tube heart stomach urinary bladder white adipose tissue rhombencephalon More reference expression data BioGPS More reference expression data
Gene ontology Molecular function electron transfer activity NADH dehydrogenase (ubiquinone) activity Cellular component respirasome membrane mitochondrial inner membrane mitochondrion cytosol mitochondrial respiratory chain complex I Biological process response to oxidative stress respiratory gaseous exchange by respiratory system mitochondrial respiratory chain complex I assembly mitochondrial ATP synthesis coupled electron transport mitochondrial electron transport, NADH to ubiquinone Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 55967 66414 Ensembl ENSG00000184752 ENSMUSG00000020022 UniProt Q9UI09 Q7TMF3 RefSeq (mRNA) NM_018838 NM_001258338 NM_025551 NM_001364691 RefSeq (protein) NP_001245267 NP_061326 NP_079827 NP_001351620 Location (UCSC) Chr 12: 94.9 – 95 Mb Chr 10: 94.03 – 94.06 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 is an enzyme that in humans is encoded by the NDUFA12 gene. ^{[5] [6] [7]} The NDUFA12 protein is a subunit of NADH dehydrogenase (ubiquinone), which is located in the mitochondrial inner membrane and is the largest of the five complexes of the electron transport chain. ^{[8] [9]} Mutations in subunits of NADH dehydrogenase (ubiquinone), also known as Complex I, frequently lead to complex neurodegenerative diseases such as Leigh's syndrome that result from mitochondrial complex I deficiency. ^[7]

Structure

The NDUFA12 gene is located on the q arm of chromosome 12 in position 22 and spans 32,386 base pairs. ^[7] The gene produces a 17 kDa protein composed of 145 amino acids. ^{[10] [11]} NDUFA12 is a subunit of the enzyme NADH dehydrogenase (ubiquinone), the largest of the respiratory complexes. The structure is L-shaped with a long, hydrophobic transmembrane domain and a hydrophilic domain for the peripheral arm that includes all the known redox centers and the NADH binding site. ^[8] It has been noted that the N-terminal hydrophobic domain has the potential to be folded into an alpha helix spanning the inner mitochondrial membrane with a C-terminal hydrophilic domain interacting with globular subunits of Complex I. The highly conserved two-domain structure suggests that this feature is critical for the protein function and that the hydrophobic domain acts as an anchor for the NADH dehydrogenase (ubiquinone) complex at the inner mitochondrial membrane. NDUFA12 is one of about 31 hydrophobic subunits that form the transmembrane region of Complex I, but it is an accessory subunit that is believed not to be involved in catalysis. ^[12] The predicted secondary structure is primarily alpha helix, but the carboxy-terminal half of the protein has high potential to adopt a coiled-coil form. The amino-terminal part contains a putative beta sheet rich in hydrophobic amino acids that may serve as mitochondrial import signal. ^{[7] [9] [13]}

Function

The human NDUFA12 gene codes for a subunit of Complex I of the respiratory chain, which transfers electrons from NADH to ubiquinone. ^[7] NADH binds to Complex I and transfers two electrons to the isoalloxazine ring of the flavin mononucleotide (FMN) prosthetic arm to form FMNH₂. The electrons are transferred through a series of iron-sulfur (Fe-S) clusters in the prosthetic arm and finally to coenzyme Q10 (CoQ), which is reduced to ubiquinol (CoQH₂). The flow of electrons changes the redox state of the protein, resulting in a conformational change and pK shift of the ionizable side chain, which pumps four hydrogen ions out of the mitochondrial matrix. ^[8]

Clinical significance

Mutations to NDUFA12 are not frequently found to cause complex I deficiency on their own. NDUFA12 is an accessory subunit and the complex can still be found assembled and enzymatically active in its absence, though in reduced amounts and activity. However, a cytosine to tyrosine mutation at position 178 that leads to a premature stop codon has been found in place of arginine at amino acid 60, leading to delayed early development, loss of motor abilities, and basal ganglia lesions typical of Leigh's syndrome. ^[14]

References

1. GRCh38: Ensembl release 89: ENSG00000184752 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000020022 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Triepels R, Smeitink J, Loeffen J, Smeets R, Trijbels F, van den Heuvel L (Apr 2000). "Characterization of the human complex I NDUFB7 and 17.2-kDa cDNAs and mutational analysis of 19 genes of the HP fraction in complex I-deficient-patients". Human Genetics. 106 (4): 385–391. doi:10.1007/s004390000278. PMID   10830904. S2CID   1036688.
6. Skehel JM, Fearnley IM, Walker JE (Nov 1998). "NADH:ubiquinone oxidoreductase from bovine heart mitochondria: sequence of a novel 17.2-kDa subunit". FEBS Letters. 438 (3): 301–305. doi: 10.1016/S0014-5793(98)01317-9 . PMID   9827566. S2CID   23466378.
7. "Entrez Gene: NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12".
8. Voet D, Voet JG, Pratt CW (2013). "Chapter 18". Fundamentals of biochemistry: life at the molecular level (4th ed.). Hoboken, NJ: Wiley. pp. 581–620. ISBN   978-0-470-54784-7.
9. Emahazion T, Beskow A, Gyllensten U, Brookes AJ (Nov 1998). "Intron based radiation hybrid mapping of 15 complex I genes of the human electron transport chain". Cytogenetics and Cell Genetics. 82 (1–2): 115–9. doi:10.1159/000015082. PMID   9763677. S2CID   46818955.
10. Zong NC, Li H, Li H, Lam MP, Jimenez RC, Kim CS, Deng N, Kim AK, Choi JH, Zelaya I, Liem D, Meyer D, Odeberg J, Fang C, Lu HJ, Xu T, Weiss J, Duan H, Uhlen M, Yates JR, Apweiler R, Ge J, Hermjakob H, Ping P (Oct 2013). "Integration of cardiac proteome biology and medicine by a specialized knowledgebase". Circulation Research. 113 (9): 1043–53. doi:10.1161/CIRCRESAHA.113.301151. PMC   4076475 . PMID   23965338.
11. "NDUFA12 - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12". Cardiac Organellar Protein Atlas Knowledgebase (COPaKB).
12. "NDUFA12". UniProt.org. The UniProt Consortium.
13. Ton C, Hwang DM, Dempsey AA, Liew CC (Dec 1997). "Identification and primary structure of five human NADH-ubiquinone oxidoreductase subunits". Biochemical and Biophysical Research Communications. 241 (2): 589–94. doi:10.1006/bbrc.1997.7707. PMID   9425316.
14. Ostergaard E, Rodenburg RJ, van den Brand M, Thomsen LL, Duno M, Batbayli M, Wibrand F, Nijtmans L (Nov 2011). "Respiratory chain complex I deficiency due to NDUFA12 mutations as a new cause of Leigh syndrome". Journal of Medical Genetics. 48 (11): 737–40. doi:10.1136/jmg.2011.088856. PMID   21617257. S2CID   33078321.

Further reading

• Maruyama K, Sugano S (Jan 1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–174. doi:10.1016/0378-1119(94)90802-8. PMID   8125298.
• Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S (Oct 1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–156. doi:10.1016/S0378-1119(97)00411-3. PMID   9373149.
• Gubin AN, Njoroge JM, Bouffard GG, Miller JL (Jul 1999). "Gene expression in proliferating human erythroid cells". Genomics. 59 (2): 168–177. doi:10.1006/geno.1999.5855. PMID   10409428.
• Hu RM, Han ZG, Song HD, Peng YD, Huang QH, Ren SX, Gu YJ, Huang CH, Li YB, Jiang CL, Fu G, Zhang QH, Gu BW, Dai M, Mao YF, Gao GF, Rong R, Ye M, Zhou J, Xu SH, Gu J, Shi JX, Jin WR, Zhang CK, Wu TM, Huang GY, Chen Z, Chen MD, Chen JL (Aug 2000). "Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning". Proceedings of the National Academy of Sciences of the United States of America. 97 (17): 9543–9548. Bibcode:2000PNAS...97.9543H. doi: 10.1073/pnas.160270997 . PMC   16901 . PMID   10931946.
• Murray J, Taylor SW, Zhang B, Ghosh SS, Capaldi RA (Sep 2003). "Oxidative damage to mitochondrial complex I due to peroxynitrite: identification of reactive tyrosines by mass spectrometry". The Journal of Biological Chemistry. 278 (39): 37223–37230. doi: 10.1074/jbc.M305694200 . PMID   12857734.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.