Onion yellow dwarf virus

Last updated
Onion yellow dwarf virus
1635363-PPT.jpg
Symptoms of onion yellow dwarf virus in onions ( Allium cepa L.)
Virus classification OOjs UI icon edit-ltr.svg
(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum: Pisuviricota
Class: Stelpaviricetes
Order: Patatavirales
Family: Potyviridae
Genus: Potyvirus
Species:
Onion yellow dwarf virus

Onion yellow dwarf virus (OYDV) is a plant virus in the genus Potyvirus that has been identified worldwide and mainly infects species of Allium such as onion, garlic, and leek. [1] [2] [3] [4] The virus causes mild to severe leaf malformation, and bulb reduction up to sixty percent has been observed in garlic. [5]

Contents

Genome

The full genome of OYDV is around 10,538 nucleotides long and encodes a polyprotein of 3,403 amino acids. Its P3 gene is longer than those of other known Potyviruses. [6]

OYDV is the first potyvirus found which has natural deletion mutants lacking the N-terminal region of helper-component proteinase (HC-Pro). The mutant isolates are common. Garlic plants grown commercially are generally co-infected with both the normal and attenuated isolates. [7] RNA silencing suppressor activities in isolates, which lack the long stretch of the N-terminal amino acids (~ 100 residues) in their HC-Pro gene, are observed to be low. [8]

Transmission

Isolates with complete HC-Pro sequences were non-persistently transmitted by aphids on their own, while the isolates with short HC-Pros (OYDV-S) were only aphid transmissible when they were co-infected with leek yellow stripe virus (LYSV), another potyvirus that mostly infects Allium spp. LYSV HC-Pro was assumed to interlink both LYSV and OYDV-S with the aphid stylet. [9] OYDV is not transmitted by dodder. [10]

Related Research Articles

<i>Potyviridae</i> Family of viruses

Potyviridae is a family of positive-strand RNA viruses that encompasses more than 30% of known plant viruses, many of which are of great agricultural significance. The family has 12 genera and 235 species, three of which are unassigned to a genus.

<span class="mw-page-title-main">Plum pox</span> Viral plant disease

Plum pox, also known as sharka, is the most devastating viral disease of stone fruit from the genus Prunus. The disease is caused by the plum pox virus (PPV), and the different strains may infect a variety of stone fruit species including peaches, apricots, plums, nectarine, almonds, and sweet and tart cherries. Wild and ornamental species of Prunus may also become infected by some strains of the virus.

<i>Potyvirus</i> Genus of positive-strand RNA viruses in the family Potyviridae

Potyvirus is a genus of positive-strand RNA viruses in the family Potyviridae. Plants serve as natural hosts. Like begomoviruses, members of this genus may cause significant losses in agricultural, pastoral, horticultural, and ornamental crops. More than 200 species of aphids spread potyviruses, and most are from the subfamily Aphidinae. The genus contains 190 species and potyviruses account for about thirty percent of all currently known plant viruses.

<i>Papaya ringspot virus</i> Species of virus

Papaya ringspot virus (PRSV) is a pathogenic plant virus in the genus Potyvirus and the virus family Potyviridae which primarily infects the papaya tree.

Asparagus virus 1 (AV-1) is one of the nine known viruses that infects asparagus plants. It is a member of the genus Potyvirus in the family Potyviridae. Initially reported by G. L Hein in 1960, it causes no distinct symptoms in asparagus plants. The only known natural plant host is the asparagus. It is spread by aphid vectors, which means that aphids do not cause the AV-1, but they do spread it.

<i>Bidens mottle virus</i> Species of virus

Bidens mottle virus (BiMoV) is a pathogenic plant virus in the plant virus family Potyviridae. BiMoV is a flexuous filamentous particle, 720 nm long, and belongs to the Potyviridae genus Potyvirus. Like other viruses in this genus, Bidens mottle virus is transmitted both mechanically by sap and by aphids in a stylet-borne fashion.

<i>Cucumber mosaic virus</i> Species of virus

Cucumber mosaic virus (CMV) is a plant pathogenic virus in the family Bromoviridae. This virus has a worldwide distribution and a very wide host range, having the reputation of the widest host range of any known plant virus. It can be transmitted from plant to plant both mechanically by sap and by aphids in a stylet-borne fashion. It can also be transmitted in seeds and by the parasitic weeds, Cuscuta sp. (dodder).

Pepper mottle virus (PepMoV) is a plant pathogenic virus in the genus Potyvirus and the virus family Potyviridae. Like other members of the Potyvirus genus, PepMV is a monopartite strand of positive-sense, single-stranded RNA surrounded by a capsid made for a single viral encoded protein. The virus is a filamentous particle that measures about 737 nm in length. Isolates of this virus has been completely sequenced and its RNA is 9640 nucleotides long. This virus is transmitted by several species of aphids in a nonpersitant manner and by mechanical inoculation.

<i>Soybean mosaic virus</i> Plant disease

Soybean mosaic virus (SMV) is a member of the plant virus genus Potyvirus. It infects mainly plants belonging to the family Fabaceae but has also been found infecting other economically important crops. SMV is the cause of soybean mosaic disease that occurs in all the soybean production areas of the world. Soybean is one of the most important sources of edible oil and proteins and pathogenic infections are responsible for annual yield losses of about $4 billion in the United States. Among these pathogens, SMV is the most important and prevalent viral pathogen in soybean production worldwide. It causes yield reductions of about 8% to 35%, but losses as high as 94% have been reported.

Sweet potato feathery mottle virus (SPFMV) is a member of the genus Potyvirus in the family Potyviridae. It is most widely recognized as one of the most regularly occurring causal agents of sweet potato viral disease (SPVD) and is currently observed in every continent except Antarctica. The number of locations where it is found is still increasing; generally, it is assumed that the virus is present wherever its host is. The virus has four strains that are found in varying parts of the world.

Apium virus Y (ApVY) is a plant pathogenic virus in the genus Potyvirus and the virus family Potyviridae.

<i>Celery mosaic virus</i> Species of virus

Celery mosaic virus (CeMV) is a plant pathogenic virus in the genus Potyvirus and the virus family Potyviridae .

Commelina mosaic virus (CoMV) is a plant pathogenic virus in the genus Potyvirus and the virus family Potyviridae. Like other members of the Potyvirus genus, CoMV is a monopartite strand of positive-sense, single-stranded RNA surrounded by a capsid made for a single viral encoded protein. The virus is a filamentous particle that measures about 707-808 nm in length. This virus is transmitted by two species of aphids, Myzus persicae and Aphis gossypii, and by mechanical inoculation.

<i>Peronospora destructor</i> Species of single-celled organism

Peronospora destructor is a plant pathogen. It causes downy mildew on leaves of cultivated and wild Allium. Allium cepa is most often affected, while Allium schoenoprasum (chives) and Allium porrum (leek) are only occasionally affected.

Narcissus degeneration virus (NDV) is a plant pathogenic Potyvirus of the family Potyviridae which infects plants of the genus Narcissus. It is one of the most serious and prevalent of the approximately 21 viruses which infect this genus.NDV is associated with chlorotic leaf striping in N. tazetta.

Carrot virus Y (CarVY) is a (+)ss-RNA virus that affects crops of the carrot family (Apiaceae), such as carrots, anise, chervil, coriander, cumin, dill and parsnip. Carrots are the only known crop to be infected in the field. Infection by the virus leads to deformed roots and discolored or mottled leaves. The virus is spread through insect vectors, and is currently only found in Australia.

Leek yellow stripe virus (LYSV) belongs to the genus Potyvirus. It was first detected in leek but also infects garlic and onion worldwide. Economically less important Allium spp., such as Allium angulosum, Allium caeruleum, Allium cyathophorum, Allium nutans, Allium scorodoprasum, Allium senescens subsp. montanum were also found to harbor the virus.

Garlic common latent virus (GarCLV) is a plant virus member of the genus Carlavirus that has been found infecting garlic globally. Detection of the virus in leek and onion has also been reported.

Shallot latent virus (SLV), a species of Carlavirus, was first identified in shallots in Netherlands. The virus particle is elongated, 650 nm in length.

<i>Puccinia porri</i> Fungus that causes leek rust

Puccinia porri is a species of rust fungus that causes leek rust. It affects leek, garlic, onion, and chives, and usually appears as bright orange spots on infected plants.

References

  1. Ward, L. I.; Perez-Egusquiza, Z.; Fletcher, J. D.; Clover, G. R. G. (2009). "A survey of viral diseases of Allium crops in New Zealand". Australasian Plant Pathology. 38 (5): 533. doi:10.1071/AP09039. S2CID   39328059.
  2. PARRANO, Leonardo; AFUNIAN, Mohammad; PAGLIACCIA, Deborah; DOUHAN, Greg; VIDALAKIS, Georgios (2012). "Characterization of viruses associated with garlic plants propagated from different reproductive tissues from Italy and other geographic regions". Phytopathologia Mediterranea. 51 (3): 549–565. ISSN   0031-9465. JSTOR   43872342.
  3. Abraham, A. D.; Kidanemariam, D. B.; Holton, T. A. (15 May 2019). "Molecular identification, incidence and phylogenetic analysis of seven viruses infecting garlic in Ethiopia". European Journal of Plant Pathology. 155 (1): 181–191. doi: 10.1007/s10658-019-01760-9 . PMC   7680954 . PMID   33304030.
  4. Santosa, Adyatma Irawan; Ertunc, Filiz (19 June 2020). "Identification, molecular detection and phylogenetic analysis of four viruses infecting Allium cepa in Ankara Province, Turkey". Journal of Plant Diseases and Protection. 127 (4): 561–569. doi:10.1007/s41348-020-00347-5. S2CID   225488130.
  5. Lot, Harve; Chovelon, Véronique; Souche, Sylvie; Delecolle, Brigitte (2007). "Effects of Onion Yellow Dwarf and Leek Yellow Stripe Viruses on Symptomatology and Yield Loss of Three French Garlic Cultivars". Plant Disease. 82 (12): 1381–1385. doi:10.1094/PDIS.1998.82.12.1381. ISSN   0191-2917. PMID   30845474.
  6. Chen, J.; Adams, M. J.; Zheng, H.-Y.; Chen, J.-P. (2003-05-01). "Sequence analysis demonstrates that Onion yellow dwarf virus isolates from China contain a P3 region much larger than other potyviruses". Archives of Virology. 148 (6): 1165–1173. doi:10.1007/s00705-003-0020-1. ISSN   0304-8608. PMID   12756621. S2CID   10079689.
  7. Takaki, F.; Sano, T.; Yamashita, K. (3 July 2006). "The complete nucleotide sequence of attenuated onion yellow dwarf virus: a natural potyvirus deletion mutant lacking the N-terminal 92 amino acids of HC-Pro". Archives of Virology. 151 (7): 1439–1445. doi:10.1007/s00705-005-0716-5. PMID   16463124. S2CID   35484265.
  8. Kim, Hangil; Aoki, Nana; Takahashi, Haruna; Yoshida, Naoto; Shimura, Hanako; Masuta, Chikara (14 May 2020). "Reduced RNA silencing suppressor activity of onion yellow dwarf virus HC-Pro with N-terminal deletion may be complemented in mixed infection with another potyvirus in garlic". Journal of General Plant Pathology. 86 (4): 300–309. doi:10.1007/s10327-020-00926-2. S2CID   218624707.
  9. Jayasinghe, Wikum H.; Kim, Hangil; Sasaki, June; Masuta, Chikara (7 March 2021). "Aphid transmissibility of onion yellow dwarf virus isolates with an N-terminal truncated HC-Pro is aided by leek yellow stripe virus". Journal of General Plant Pathology. 87 (3): 178–183. doi:10.1007/s10327-021-00986-y. S2CID   233782267.
  10. Bos, L. (1983). "Viruses and Virus Diseases of Allium Species". Acta Horticulturae (127): 11–30. doi:10.17660/ActaHortic.1983.127.1.