Polychaos dubium | |
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Species: | P. dubium |
Binomial name | |
Polychaos dubium (Schaeffer, 1916) Schaeffer, 1926 [1] | |
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Polychaos dubium is a freshwater amoeboid and one of the larger species of single-celled eukaryote. Like other amoebozoans, P. dubium moves by means of temporary projections called pseudopods. P. dubium reportedly has one of the largest genome size of any organism known, [3] though the authors of a 2004 study suggest treating that measurement with caution. [4]
Polychaos dubium was previously known as Amoeba dubia. [2] The author who named the species later recognized it as different from species of Amoeba , and so designated it the type species of the genus Polychaos . [1] Unlike species of Amoeba, P. dubium lacks longitudinal ridges on its pseudopods. [5]
A few characteristics distinguish Polychaos dubium from other species of Polychaos. The crystals floating in its cytoplasm take the shape of flat bipyramids, flat plates, or clustered platelets. The nucleus is ellipsoid in shape, has granules next to the membrane, and lacks an endosome. The cell is usually polypodal (has many pseudopodia), and the endoplasm and ectoplasm of the cytoplasm are clear. [5] During rapid locomotion, P. dubium may become monopodial (present only one pseudopod), [6] but there are an average of 12 pseudopodia. [7]
Polychaos dubium has one of the largest genomes known for any organism, consisting of 670 billion base pairs or 670 Gbp, [4] which is over 200 times larger than the human genome (3.2 Gbp). The authors of one 2004 study, however, suggest treating that measurement with caution, because it was taken before the advent of modern genomic methods. [4]
P. dubium inhabits freshwater and is herbivorous, [5] eating algae. [6] Specimens have been collected in North America, and northern Europe. [8]
A pseudopod or pseudopodium is a temporary arm-like projection of a eukaryotic cell membrane that is emerged in the direction of movement. Filled with cytoplasm, pseudopodia primarily consist of actin filaments and may also contain microtubules and intermediate filaments. Pseudopods are used for motility and ingestion. They are often found in amoebas.
Amoebozoa is a major taxonomic group containing about 2,400 described species of amoeboid protists, often possessing blunt, fingerlike, lobose pseudopods and tubular mitochondrial cristae. In traditional classification schemes, Amoebozoa is usually ranked as a phylum within either the kingdom Protista or the kingdom Protozoa. In the classification favored by the International Society of Protistologists, it is retained as an unranked "supergroup" within Eukaryota. Molecular genetic analysis supports Amoebozoa as a monophyletic clade. Modern studies of eukaryotic phylogenetic trees identify it as the sister group to Opisthokonta, another major clade which contains both fungi and animals as well as several other clades comprising some 300 species of unicellular eukaryotes. Amoebozoa and Opisthokonta are sometimes grouped together in a high-level taxon, variously named Unikonta, Amorphea or Opimoda.
Naegleria is a free living amoebae protist genus consisting of 47 described species often found in warm aquatic environments as well as soil habitats worldwide. It has three life cycle forms: the amoeboid stage, the cyst stage, and the flagellated stage, and has been routinely studied for its ease in change from amoeboid to flagellated stages. The Naegleria genera became famous when Naegleria fowleri, a human pathogenic strain and the causative agent of primary amoebic meningoencephalitis (PAM), was discovered in 1965. Most species in the genus, however, are nonpathogenic, meaning they do not cause disease.
The Rhizaria are a diverse and species-rich supergroup of mostly unicellular eukaryotes. Except for the Chlorarachniophytes and three species in the genus Paulinella in the phylum Cercozoa, they are all non-photosynthethic, but many foraminifera and radiolaria have a symbiotic relationship with unicellular algae. A multicellular form, Guttulinopsis vulgaris, a cellular slime mold, has been described. This group was used by Cavalier-Smith in 2002, although the term "Rhizaria" had been long used for clades within the currently recognized taxon. Being described mainly from rDNA sequences, they vary considerably in form, having no clear morphological distinctive characters (synapomorphies), but for the most part they are amoeboids with filose, reticulose, or microtubule-supported pseudopods. In the absence of an apomorphy, the group is ill-defined, and its composition has been very fluid. Some Rhizaria possess mineral exoskeletons, which are in different clades within Rhizaria made out of opal, celestite, or calcite. Certain species can attain sizes of more than a centimeter with some species being able to form cylindrical colonies approximately 1 cm in diameter and greater than 1 m in length. They feed by capturing and engulfing prey with the extensions of their pseudopodia; forms that are symbiotic with unicellular algae contribute significantly to the total primary production of the ocean.
A contractile vacuole (CV) is a sub-cellular structure (organelle) involved in osmoregulation. It is found predominantly in protists and in unicellular algae. It was previously known as pulsatile or pulsating vacuole.
Chaos is a genus of single-celled amoeboid organisms in the family Amoebidae. The largest and most-known species, the so-called "giant amoeba", can reach lengths up to 5 mm, although most specimens fall between 1 and 3 mm.
Amoeba proteus is a large species of amoeba closely related to another genus of giant amoebae, Chaos. As such, the species is sometimes given the alternative scientific name Chaos diffluens.
The Tubulinea are a major grouping of Amoebozoa, including most of the more familiar amoebae genera like Amoeba, Arcella, Difflugia and Hartmannella.
Paulinella is a genus of at least eleven species including both freshwater and marine amoeboids. Like many members of euglyphids it is covered by rows of siliceous scales, and use filose pseudopods to crawl over the substrate of the benthic zone.
Amoeba is a genus of single-celled amoeboids in the family Amoebidae. The type species of the genus is Amoeba proteus, a common freshwater organism, widely studied in classrooms and laboratories.
Amoeboid movement is the most typical mode of locomotion in adherent eukaryotic cells. It is a crawling-like type of movement accomplished by protrusion of cytoplasm of the cell involving the formation of pseudopodia ("false-feet") and posterior uropods. One or more pseudopodia may be produced at a time depending on the organism, but all amoeboid movement is characterized by the movement of organisms with an amorphous form that possess no set motility structures.
Mayorella is a genus of small amoeboid protists in the phylum Amoebozoa. The genus consists of amoebae that exhibit pseudopodia and feed on a variety of organisms through phagocytosis, making them an important group in microbial ecology across most environments worldwide. Mayorella species have been found in soil, freshwater and marine environments.
Testate amoebae are a polyphyletic group of unicellular amoeboid protists, which differ from naked amoebae in the presence of a test that partially encloses the cell, with an aperture from which the pseudopodia emerge, that provides the amoeba with shelter from predators and environmental conditions.
Polychaos is an amoeboid genus in the Amoebozoa group. Several characters unite the species in this genus. The pseudopods meld at their bases when the organism is moving, and have dorsal, longitudinal ridges. The nucleus is oval or ellipsoidal.
Paris japonica is a Japanese species of plants in the genus Paris in the family Melanthiaceae.
Collodictyon is a genus of single-celled, omnivorous eukaryotes belonging to the collodictyonids, also known as diphylleids. Due to their mix of cellular components, Collodictyonids do not belong to any well-known kingdom-level grouping of that domain and this makes them distinctive from other families. Recent research places them in a new 'supergroup' together with rigifilids and Mantamonas, with the so-far informal name 'CRuMs'.
Reticulomyxa is a monospecific genus of freshwater foraminiferans. The type species is the unicellular Reticulomyxa filosa. It is found in freshwater environments as well as moist environments, like decomposing matter and damp soils. The heterotrophic naked foraminiferan can feed on microbes as well has larger organisms and is able to be sustained in culture by supplemented nutrients such as wheat germ and oats. The large, multinucleate foraminferan is characteristic for its lack of test and named for the network of connecting pseudopodia surrounding its central body mass. The organism has unique bidirectional cytoplasmic streaming throughout the anastomosing pseudopodia that is some of the fastest reported organelle transport observed. Reticulomyxa was first described in 1949 and is commonly used as a model organism for the unique transport of organelles throughout the cytoplasm of pseudopodia by cytoskeletal mechanisms. Only asexual reproduction of this genus has been observed in culture, but the genome possesses genes related to meiosis suggesting it is capable of sexually reproductive life stages.
Rigifila is a genus of free-living single-celled eukaryotes, or protists, containing the sole species Rigifila ramosa. It is classified within the monotypic family Rigifilidae. Along with Micronucleariidae, it is a member of Rigifilida, an order of basal eukaryotes within the CRuMs clade. It differs from Micronuclearia by having two proteic layers surrounding their cytoplasm instead of a single one, and having more irregular mitochondrial cristae, among other morphological differences.
An amoeba, often called an amoeboid, is a type of cell or unicellular organism with the ability to alter its shape, primarily by extending and retracting pseudopods. Amoebae do not form a single taxonomic group; instead, they are found in every major lineage of eukaryotic organisms. Amoeboid cells occur not only among the protozoa, but also in fungi, algae, and animals.
An amoeboflagellate is any eukaryotic organism capable of behaving as an amoeba and as a flagellate at some point during their life cycle. Amoeboflagellates present both pseudopodia and at least one flagellum, often simultaneously.