RNF111

RNF111
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2KIZ
Identifiers
Aliases	RNF111 , ARK, ring finger protein 111, hRNF111
External IDs	OMIM: 605840; MGI: 1934919; HomoloGene: 9741; GeneCards: RNF111; OMA:RNF111 - orthologs
Gene location (Human) Chr. Chromosome 15 (human) [1] Band 15q22.1-q22.2 Start 58,865,175 bp [1] End 59,097,419 bp [1]
Gene location (Mouse) Chr. Chromosome 9 (mouse) [2] Band 9 D|9 39.53 cM Start 70,332,706 bp [2] End 70,411,007 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in secondary oocyte endothelial cell monocyte ganglionic eminence Epithelium of choroid plexus ventricular zone epithelium of colon stromal cell of endometrium tonsil sural nerve Top expressed in zygote cumulus cell secondary oocyte granulocyte primitive streak blood parotid gland pineal gland lymph node aortic valve More reference expression data BioGPS More reference expression data
Gene ontology Molecular function SUMO polymer binding protein binding metal ion binding ubiquitin protein ligase activity transferase activity SMAD binding Cellular component nucleoplasm nucleus cytoplasm cytosol PML body protein-containing complex Biological process positive regulation of transcription, DNA-templated ubiquitin-dependent SMAD protein catabolic process protein polyubiquitination multicellular organism development positive regulation of transforming growth factor beta receptor signaling pathway positive regulation of protein ubiquitination pattern specification process proteasome-mediated ubiquitin-dependent protein catabolic process protein ubiquitination global genome nucleotide-excision repair positive regulation of transcription by RNA polymerase II DNA repair cellular response to DNA damage stimulus ubiquitin-dependent protein catabolic process Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 54778 93836 Ensembl ENSG00000157450 ENSMUSG00000032217 UniProt Q6ZNA4 Q99ML9 RefSeq (mRNA) NM_001270528 NM_001270529 NM_001270530 NM_017610 NM_001330331 NM_033604 NM_001357494 NM_001374753 RefSeq (protein) NP_001257457 NP_001257458 NP_001257459 NP_001317260 NP_060080 NP_291082 NP_001344423 NP_001361682 Location (UCSC) Chr 15: 58.87 – 59.1 Mb Chr 9: 70.33 – 70.41 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

E3 ubiquitin-protein ligase Arkadia is an enzyme that in humans is encoded by the RNF111 gene. ^{[5] [6]}

Function

The protein encoded by this gene contains a RING finger domain, a motif known to be involved in protein-protein and protein-DNA interactions. The mouse counterpart of this gene (Rnf111/arkadia) has been shown to genetically interact with the transforming growth factor (TGF) beta-like factor Nodal, and act as a modulator of the nodal signaling cascade, which is essential for the induction of mesoderm during embryonic development. ^[6]

Interactions

RNF111 has been shown to interact with Mothers against decapentaplegic homolog 7 ^[7] and Mothers against decapentaplegic homolog 3. ^{[7] [8]}

References

1. GRCh38: Ensembl release 89: ENSG00000157450 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000032217 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Episkopou V, Arkell R, Timmons PM, Walsh JJ, Andrew RL, Swan D (Apr 2001). "Induction of the mammalian node requires Arkadia function in the extraembryonic lineages". Nature. 410 (6830): 825–30. Bibcode:2001Natur.410..825E. doi:10.1038/35071095. PMID   11298452. S2CID   38456861.
6. "Entrez Gene: RNF111 ring finger protein 111".
7. Koinuma D, Shinozaki M, Komuro A, Goto K, Saitoh M, Hanyu A, Ebina M, Nukiwa T, Miyazawa K, Imamura T, Miyazono K (Dec 2003). "Arkadia amplifies TGF-beta superfamily signalling through degradation of Smad7". The EMBO Journal. 22 (24): 6458–70. doi:10.1093/emboj/cdg632. PMC   291827 . PMID   14657019.
8. Yuzawa H, Koinuma D, Maeda S, Yamamoto K, Miyazawa K, Imamura T (Jan 2009). "Arkadia represses the expression of myoblast differentiation markers through degradation of Ski and the Ski-bound Smad complex in C2C12 myoblasts". Bone. 44 (1): 53–60. doi:10.1016/j.bone.2008.09.013. PMID   18950738.

Further reading

• Patten I, Placzek M (Aug 2001). "Vertebrate development: Et in Arkadia". Current Biology. 11 (15): R616-9. Bibcode:2001CBio...11.R616P. doi: 10.1016/S0960-9822(01)00367-0 . PMID   11516970.
• Niederländer C, Walsh JJ, Episkopou V, Jones CM (Apr 2001). "Arkadia enhances nodal-related signalling to induce mesendoderm". Nature. 410 (6830): 830–4. Bibcode:2001Natur.410..830N. doi:10.1038/35071103. PMID   11298453. S2CID   4322926.
• Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA (Dec 2002). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proceedings of the National Academy of Sciences of the United States of America. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Koinuma D, Shinozaki M, Komuro A, Goto K, Saitoh M, Hanyu A, Ebina M, Nukiwa T, Miyazawa K, Imamura T, Miyazono K (Dec 2003). "Arkadia amplifies TGF-beta superfamily signalling through degradation of Smad7". The EMBO Journal. 22 (24): 6458–70. doi:10.1093/emboj/cdg632. PMC   291827 . PMID   14657019.
• Colland F, Jacq X, Trouplin V, Mougin C, Groizeleau C, Hamburger A, Meil A, Wojcik J, Legrain P, Gauthier JM (Jul 2004). "Functional proteomics mapping of a human signaling pathway". Genome Research. 14 (7): 1324–32. doi:10.1101/gr.2334104. PMC   442148 . PMID   15231748.
• Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M (Oct 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.
• Liu W, Rui H, Wang J, Lin S, He Y, Chen M, Li Q, Ye Z, Zhang S, Chan SC, Chen YG, Han J, Lin SC (Apr 2006). "Axin is a scaffold protein in TGF-beta signaling that promotes degradation of Smad7 by Arkadia". The EMBO Journal. 25 (8): 1646–58. doi:10.1038/sj.emboj.7601057. PMC   1440825 . PMID   16601693.
• Nagano Y, Mavrakis KJ, Lee KL, Fujii T, Koinuma D, Sase H, Yuki K, Isogaya K, Saitoh M, Imamura T, Episkopou V, Miyazono K, Miyazawa K (Jul 2007). "Arkadia induces degradation of SnoN and c-Ski to enhance transforming growth factor-beta signaling". The Journal of Biological Chemistry. 282 (28): 20492–501. doi: 10.1074/jbc.M701294200 . PMID   17510063.
• Levy L, Howell M, Das D, Harkin S, Episkopou V, Hill CS (Sep 2007). "Arkadia activates Smad3/Smad4-dependent transcription by triggering signal-induced SnoN degradation". Molecular and Cellular Biology. 27 (17): 6068–83. doi:10.1128/MCB.00664-07. PMC   1952153 . PMID   17591695.