RTRAF

RTRAF
Identifiers
Aliases	RTRAF , CGI99, CLE, CLE7, LCRP369, RLLM1, CGI-99, C14orf166, hCLE1, chromosome 14 open reading frame 166, RNA transcription, translation and transport factor, hCLE
External IDs	OMIM: 610858; MGI: 1915295; HomoloGene: 9355; GeneCards: RTRAF; OMA:RTRAF - orthologs
Gene location (Human) Chr. Chromosome 14 (human) [1] Band 14q22.1 Start 51,989,514 bp [1] End 52,010,694 bp [1]
Gene location (Mouse) Chr. Chromosome 14 (mouse) [2] Band 14|14 A3 Start 19,861,419 bp [2] End 19,873,892 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in secondary oocyte gonad right testis left testis cartilage tissue ganglionic eminence Achilles tendon palpebral conjunctiva right ventricle body of pancreas Top expressed in fossa condyle medial ganglionic eminence endothelial cell of lymphatic vessel trigeminal ganglion primitive streak renal corpuscle vestibular sensory epithelium medullary collecting duct vas deferens More reference expression data BioGPS More reference expression data
Gene ontology Molecular function RNA polymerase II complex binding identical protein binding RNA binding protein binding Cellular component cytoskeleton cytosol nucleus tRNA-splicing ligase complex cytoplasm microtubule organizing center nucleoplasm centrosome perinuclear region of cytoplasm mitotic spindle Biological process RNA transport regulation of transcription, DNA-templated positive regulation of transcription by RNA polymerase II transcription, DNA-templated viral process tRNA splicing, via endonucleolytic cleavage and ligation negative regulation of protein kinase activity Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 51637 68045 Ensembl ENSG00000087302 ENSMUSG00000021807 UniProt Q9Y224 Q9CQE8 RefSeq (mRNA) NM_016039 NM_026528 RefSeq (protein) NP_057123 NP_080804 Location (UCSC) Chr 14: 51.99 – 52.01 Mb Chr 14: 19.86 – 19.87 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

RNA transcription, translation and transport factor is a protein that in humans is encoded by the RTRAF gene. ^{[5] [6]}

References

1. GRCh38: Ensembl release 89: ENSG00000087302 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000021807 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Lai CH, Chou CY, Ch'ang LY, Liu CS, Lin W (Aug 2000). "Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics". Genome Res. 10 (5): 703–13. doi:10.1101/gr.10.5.703. PMC   310876 . PMID   10810093.
6. "RTRAF RNA transcription, translation and transport factor [ Homo sapiens (human) ]" . Retrieved 2019-04-28.

Further reading

• Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.
• Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID   15635413. S2CID   4344740.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Howng SL, Hsu HC, Cheng TS, et al. (2004). "A novel ninein-interaction protein, CGI-99, blocks ninein phosphorylation by GSK3beta and is highly expressed in brain tumors". FEBS Lett. 566 (1–3): 162–8. doi: 10.1016/j.febslet.2004.04.024 . PMID   15147888.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Huarte M, Sanz-Ezquerro JJ, Roncal F, et al. (2001). "PA subunit from influenza virus polymerase complex interacts with a cellular protein with homology to a family of transcriptional activators". J. Virol. 75 (18): 8597–604. doi:10.1128/JVI.75.18.8597-8604.2001. PMC   115105 . PMID   11507205.
• Dawson SJ, White LA (1992). "Treatment of Haemophilus aphrophilus endocarditis with ciprofloxacin". J. Infect. 24 (3): 317–20. doi:10.1016/S0163-4453(05)80037-4. PMID   1602151.