Secretoglobin

Last updated
Secretoglobin
Identifiers
SymbolSecretoglobin
Pfam PF01099
InterPro IPR016126
PROSITE PS51311
SCOP2 d1utra_ / SCOPe / SUPFAM
CDD cd00633
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary

Secretoglobins (SCGBs) are a family of small, alpha-helical, disulfide linked, dimeric proteins found only in mammals. This family was formerly known as the Uteroglobin/Clara cell 10-kDa family, after the two aliases of its founding member Uteroglobin.

Contents

Structure and function

The proteins are mostly alpha-helical, and the dimer is formed in an antiparallel way. The dimer interface features a cavity formed across the two monomers, which can accommodate small to medium sized ligands like steroids and phospholipids. [1] The binding and release may be coupled with the redox state of the cystines, i.e. the presence of these disulfide bonds. [2]

Many have regulatory functions.

Classification

The family was classified by sequence homology into 6 subfamilies in 2006. [3] The human and mouse genomes only contain the first three families, per a 2011 update. Not every family is monophyletic. [4]

SubfamilyGroupMember
Symbol [4] NameLigand(s)
1UGBAUGB SCGB1A1 Uteroglobin (UGB); blastokinin, CCSPphosphatidylcholine, phosphatidylinositol, PCB
BABPA-likeScgb1b2 (rodent)in general: steroid pheromones
C SCGB1C1
SCGB1C2
D Lipophilin A/B
2A Mammaglobin SCGB2A1 Mammaglobin-B; lipophilin-C
SCGB2A2 Mammaglobin-A
BABPBG-likeScgb2b1 (rodent)in general: steroid pheromones
3UGB-likeAUGB-like SCGB3A1
SCGB3A2

Rat prostatein (rat prostatic steroid binding protein) is a three component, tetrameric protein complex built from three lipophilin-like genes in groups 2 and 3. Some sources describe it as the ortholog of lipophilin. [3]

Extra subfamilies

Subfamilies 4 and 6 were originally described as found in human and mice, but they are now treated as duplicates of existing groups. Subfamily 5 is found in neither to begin with. [3]

Subfamily 4 formerly included what is now known as group 1B and 2B as group 4A. Pairs of 1B/2B (ABP) genes are arranged head-to-head on the chromosome into "modules" that have been independently duplicated. [4]

Subfamily 6 was supposed to include human and rat RYD5, [3] now reassigned Scgb1c1. [4]

Fel d 1 was supposed to be put into two subfamilies: chain 1 in subfamily 4, and chain 2 in subfamily 5. [3] Although it is not mentioned in the 2011 update, InterPro matches suggest that CH1 is similar to 1B and CH2 is similar to 2B. [5] Extra computational research confirms the similarity, invalidating subfamilies 4 and 5 fully. [6]

Related Research Articles

<span class="mw-page-title-main">Fel d 1</span> Secretoglobin protein

Fel d 1 is a secretoglobin protein complex that, in cats, is encoded by the CH1 and CH2 genes.

<span class="mw-page-title-main">Uteroglobin</span> Protein-coding gene in the species Homo sapiens

Uteroglobin, or blastokinin, also known as secretoglobin family 1A member 1 (SCGB1A1), is a protein that in humans is encoded by the SCGB1A1 gene.

<span class="mw-page-title-main">Transforming growth factor beta superfamily</span> Protein family

The transforming growth factor beta (TGF-β) superfamily is a large group of structurally related cell regulatory proteins that was named after its first member, TGF-β1, originally described in 1983. They interact with TGF-beta receptors.

The testicular receptor proteins are members of the nuclear receptor family of intracellular transcription factors. There are two forms of the receptor, TR2 and TR4, each encode by a separate gene.

<span class="mw-page-title-main">ABCA2</span> Protein-coding gene in the species Homo sapiens

ATP-binding cassette sub-family A member 2 is a protein that in humans is encoded by the ABCA2 gene.

<span class="mw-page-title-main">SPEG</span> Protein-coding gene in the species Homo sapiens

Striated muscle preferentially expressed protein kinase, in the human is encoded by the SPEG gene, a member of the myosin light chain kinase protein family. SPEG is involved in the development of the muscle cell cytoskeleton, and the expression of this gene has important roles in the development of skeletal muscles, and their maintenance and function. Mutations are associated with centronuclear myopathies a group of congenital disorders where the cell nuclei are abnormally centrally placed.

<span class="mw-page-title-main">SCGB3A2</span> Protein-coding gene in the species Homo sapiens

Secretoglobin family 3A member 2 is a protein that in humans is encoded by the SCGB3A2 gene.

<span class="mw-page-title-main">BPIFB2</span> Protein-coding gene in the species Homo sapiens

BPI fold-containing family B, member 2, (BPIFB2) also known as bactericidal/permeability-increasing protein-like 1, is a protein that in humans is encoded by the BPIFB2 gene.

<span class="mw-page-title-main">SCGB1D2</span> Protein-coding gene in the species Homo sapiens

Secretoglobin family 1D member 2 is a protein that in humans is encoded by the SCGB1D2 gene.

<span class="mw-page-title-main">ABCB8</span> Protein-coding gene in the species Homo sapiens

ATP-binding cassette sub-family B member 8, mitochondrial is a protein that in humans is encoded by the ABCB8 gene.

<span class="mw-page-title-main">Insulin/IGF/Relaxin family</span> Group of proteins

The insulin/IGF/relaxin family is a group of evolutionary related proteins which possess a variety of hormonal activities. Family members in human include two subfamilies:

<span class="mw-page-title-main">Major urinary proteins</span> Proteins found in the urine and other secretions of many animals

Major urinary proteins (Mups), also known as α2u-globulins, are a subfamily of proteins found in abundance in the urine and other secretions of many animals. Mups provide a small range of identifying information about the donor animal, when detected by the vomeronasal organ of the receiving animal. They belong to a larger family of proteins known as lipocalins. Mups are encoded by a cluster of genes, located adjacent to each other on a single stretch of DNA, that varies greatly in number between species: from at least 21 functional genes in mice to none in humans. Mup proteins form a characteristic glove shape, encompassing a ligand-binding pocket that accommodates specific small organic chemicals.

<span class="mw-page-title-main">BPIFA3</span> Protein-coding gene in the species Homo sapiens

BPI fold containing family A, member 3 (BPIFA3) is a protein that in humans is encoded by the BPIFA3 gene. The gene is also known as SPLUNC3 and C20orf71 in humans and the orthologous gene in mice is 1700058C13Rik. There are multiple variants of the BPIFA3 projected to be a secreted protein. It is very highly expressed in testis with little or no expression in other tissues. The Human Protein Atlas project and Mouse ENCODE Consortium report RNA-Seq expression at RPKM levels of 29.1 for human testis and 69.4 for mouse, but 0 for all other tissues. Similarly, the Bgee consortium, using multiple techniques in addition to RNA-Seq, reports a relative Expression Score of 95.8 out of 100 for testis and 99.0 for sperm in humans; however low levels of BPIFA3 between 20 and 30 were seen for a variety of tissues such as muscle, glands, prostate, nervous system, and skin.

<span class="mw-page-title-main">BPIFB1</span> Protein-coding gene in the species Homo sapiens

BPI fold-containing family B member 1 (BPIFB1) is a protein that in humans is encoded by the BPIFB1 gene. BPIFB1 is a secreted protein, expressed at very high levels in mucosa of the airways and salivary glands, and at moderate levels in the digestive tract and pancreas.

<span class="mw-page-title-main">TMEM81</span> Protein-coding gene in the species Homo sapiens

Transmembrane Protein 81 or TMEM81 is a protein that in humans is encoded by the TMEM81 gene. TMEM81 is a poorly-characterized transmembrane protein which contains an extracellular immunoglobulin domain.

<span class="mw-page-title-main">Rubicon homology domain</span> Rubicon homology protein domain

The Rubicon homology domain is an evolutionarily conserved protein domain of approximately 250 amino acids that mediates protein–protein interaction. RH domains are present in several human proteins involved in regulation of autophagy and endosomal trafficking. While not all RH domains have been characterized, those of human Rubicon and PLEKHM1 mediate interaction with the small GTPase Rab7, which is found on late endosomes and autophagosomes.

<span class="mw-page-title-main">BPIFB5P</span> Pseudogene in the species Homo sapiens

BPI fold containing family B, member 5 is a non-human protein encoded by the Bpifb5 gene, also known as Lplunc5. The BPIFB5 protein and Bpifb5 gene have been characterized in mammals such as rodents and even-toed ungulates but are apparently lacking in primates and other vertebrates such as birds, reptiles, and amphibians. The protein in rodents is expressed at moderately high levels in mucosa of the airways and at moderate levels in salivary glands, esophagus, and gonads ; in even-toed ungulates expression is high in testis, moderate in brain and striated muscle, and low in kidney.

<span class="mw-page-title-main">BPIFB6</span> Protein-coding gene in the species Homo sapiens

BPI fold containing family B, member 6 (BPIFB6), also known as bactericidal/permeability-increasing protein-like 3 (BPIL3), is a protein that in humans is encoded by the BPIFB6 gene, also known as BPIL3 and LPLUNC6. It is expressed at high levels in hypertrophic tonsils, at relatively moderate levels in oronasal epithelium including nasal mucosa, tongue, and salivary gland, as well as esophageal mucosa at lesser levels. Orthologs are present in many vertebrate species including mammals, birds, reptiles, and amphibians.

<span class="mw-page-title-main">BPIFB9P</span> Pseudogene in the species Homo sapiens

Vomeromodulin is a non-human protein also known as BPI fold containing family B, member 9 (BPIFB9) in the rat encoded by the Bpifb9/RYF3 gene, and as BPI fold containing family B, member 9A (BPIFB9A) encoded by the Bpifb9a gene in the mouse. This protein has been characterized in mammals such as rodents, carnivores, even-toed ungulates, insectivores, bats, lagomorphs, and shrews but is apparently absent in primates and other vertebrates such as birds, reptiles, and amphibians. Its function is associated with detection of chemical odorant pheromone molecules.

<span class="mw-page-title-main">BPIFA2</span> Protein-coding gene in the species Homo sapiens

BPI fold containing family A, member 2 (BPIFA2), also known as Parotid Secretory Protein (PSP), is a protein that in humans is encoded by the BPIFA2 gene. The BPIFA2 gene sequence predicts multiple transcripts ; 2 mRNA variants have been well characterized. The resulting BPIFA2 is a secreted protein, expressed at very high levels in the parotid (salivary) gland; at high levels in oropharyngeal mucosa, including tongue; and at moderate levels many other tissue types and glands including mammary gland, testis, lung, bladder, blood, prostate, adrenal gland, kidney, and pancreas.

References

  1. Umland TC, Swaminathan S, Singh G, Warty V, Furey W, Pletcher J, Sax M (August 1994). "Structure of a human Clara cell phospholipid-binding protein-ligand complex at 1.9 A resolution". Nature Structural Biology. 1 (8): 538–45. doi:10.1038/nsb0894-538. PMID   7664082. S2CID   28261246.
  2. Härd T, Barnes HJ, Larsson C, Gustafsson JA, Lund J (November 1995). "Solution structure of a mammalian PCB-binding protein in complex with a PCB". Nature Structural Biology. 2 (11): 983–9. doi:10.1038/nsb1195-983. PMID   7583672. S2CID   10369347.
  3. 1 2 3 4 5 Klug J, Beier HM, Bernard A, Chilton BS, Fleming TP, Lehrer RI, et al. (25 January 2006). "Uteroglobin/Clara cell 10-kDa family of proteins: nomenclature committee report". Annals of the New York Academy of Sciences. 923 (1): 348–54. doi:10.1111/j.1749-6632.2000.tb05549.x. PMID   11193777. S2CID   38862724.
  4. 1 2 3 4 Jackson BC, Thompson DC, Wright MW, McAndrews M, Bernard A, Nebert DW, Vasiliou V (October 2011). "Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily". Human Genomics. 5 (6): 691–702. doi: 10.1186/1479-7364-5-6-691 . PMC   3251818 . PMID   22155607.
  5. "Fel d 1 chain 1", Mus musculus, "Fel d 1 chain 2", Mus musculus. InterPro.
  6. Durairaj R, Pageat P, Bienboire-Frosini C (2018). "Another cat and mouse game: Deciphering the evolution of the SCGB superfamily and exploring the molecular similarity of major cat allergen Fel d 1 and mouse ABP using computational approaches". PLOS ONE. 13 (5): e0197618. Bibcode:2018PLoSO..1397618D. doi: 10.1371/journal.pone.0197618 . PMC   5957422 . PMID   29771985.