Thiodictyon

Last updated

Thiodictyon
Scientific classification Red Pencil Icon.png
Domain: Bacteria
Phylum: Pseudomonadota
Class: Gammaproteobacteria
Order: Chromatiales
Family: Chromatiaceae
Genus: Thiodictyon
Sergei Winogradsky 1888
Species
  • Thiodictyon elegansSergei Winogradsky 1888
  • Thiodictyon bacillosum(Winogradsky 1888) Pfennig and Truper 1971
  • "Ca. T. syntrophicum" Luedin et al 2018
  • "Ca. T. intracellulare" Muñoz-Gómez et al 2021

Thiodictyon is a genus of gram-negative bacterium classified within purple sulfur bacteria (PSB). [1]

Contents

Classification

Thiodictyon belongs to the family Chromatiaceae and class Gammaproteobacteria. [6] "Ca. T. syntrophicum" is known to be related to the genera Lamprocystis, Thiocystis and Thiocapsa. [1] Strain Cad16T was previously assigned to the genus Lamprocystis, but was recently reassigned to the genus Thiodictyon by Peduzzi et al. [1] [4]  Matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS) was used to separate Cad16T from Lamprocystis due to differences in cell morphology/arrangement, caretenoid groups and chemolithotrophic growth; all of which are important factors used to consider Cad16T a member of the genus Thiodictyon rather than the genus Lamprocystis. [1]

Genetics

The 16S rRNA from the type strains of the two recognized species have been sequenced. [2] The two proposed Candidatus species have had their whole genomes sequenced. [7] [5] GTDB reports that several whole genomes from metagenomic samples, not yet named, are also available, clustering into three additional species-level groups. [8]

Strain Cad16T

Cad16T is a novel strain of "Ca. T. syntrophicum", which was isolated from the chemocline of a crenogenic meromictic lake. [1] [9] 16S rRNA gene sequence data shows that Cad16T is closely related to Thiodictyon bacillosum DSM234T (99.2% sequence similarity) and Thiodictyon elegans DSM232T (98.9% sequence similarity). [1]

Environment

The Cad16T strain of "Ca. T. syntrophicum" was isolated from Lake Cadagno. This lake is crenogenic and meromictic, and its layers create diverse ecological niches which support the growth of diverse and often novel species. Lake Cadagno is euxinic, meaning it is both anoxic and sulphidic at depth. Its chemocline, which occurs at approximately 12 m, is quite narrow and has high concentrations of sulfide, sulfate, oxygen and light. [9] A turbidity maximum also correlates with the chemocline, and this is caused by high concentrations of anaerobic phototrophic sulfur bacteria. [9]

Carbon fixation

"Ca. T. syntrophicum" strain Cad16T has the capability for CO2 fixation, and was found to play a key role in the overall inorganic carbon fixation that occurred in Lake Cadagno. [9]  Within the chemocline of Lake Cadagno, Cad16T and another isolate from the lake, CadA31 (a PSB), were the two most efficient CO2 fixing strains, and researchers found that CO2 fixation occurred in both light and dark conditions. [9] However, Cad16T was most likely the main contributor to light and dark carbon fixation within the chemocline of the lake, as Storelli et al. found that this strain assimilated approximately 25.9% of all hypothetical carbon fixed within the chemocline. [9]

Sulfur cycling

Strain Cad16T of "Ca. T. syntrophicum" is a species of PSB. Researchers discovered that strain Cad16T creates and stores sulfur globules intracellularly. [1] The pure cultures of Cad16T were found to utilize sulfide and elemental sulfur as their electron donors. [1]

Cad16T is known to have syntrophic associations and cell-to-cell aggregation with Desulfocapsa sp. [1] Desulfocapsa sp. is a sulfate reducing and sulfur disproportionating bacteria found in both mixed culture and within the natural environment. [1]

Related Research Articles

Green sulfur bacteria Family of bacteria

The green sulfur bacteria are a phylum of obligately anaerobic photoautotrophic bacteria that metabolize sulfur.

The purple sulfur bacteria (PSB) are part of a group of Pseudomonadota capable of photosynthesis, collectively referred to as purple bacteria. They are anaerobic or microaerophilic, and are often found in stratified water environments including hot springs, stagnant water bodies, as well as microbial mats in intertidal zones. Unlike plants, algae, and cyanobacteria, purple sulfur bacteria do not use water as their reducing agent, and therefore do not produce oxygen. Instead, they can use sulfur in the form of sulfide, or thiosulfate (as well, some species can use H2, Fe2+, or NO2) as the electron donor in their photosynthetic pathways. The sulfur is oxidized to produce granules of elemental sulfur. This, in turn, may be oxidized to form sulfuric acid.

<span class="mw-page-title-main">Purple bacteria</span> Group of phototrophic bacteria

Purple bacteria or purple photosynthetic bacteria are Gram-negative proteobacteria that are phototrophic, capable of producing their own food via photosynthesis. They are pigmented with bacteriochlorophyll a or b, together with various carotenoids, which give them colours ranging between purple, red, brown, and orange. They may be divided into two groups – purple sulfur bacteria and purple non-sulfur bacteria (Rhodospirillaceae). Purple bacteria are anoxygenic phototrophs widely spread in nature, but especially in aquatic environments, where there are anoxic conditions that favor the synthesis of their pigments.

Green Lake (New York) Lake in New York

Green Lake is the larger of the two lakes in Green Lakes State Park, which lies about 9 miles (14 km) east of downtown Syracuse in Onondaga County, New York. Round Lake is the smaller lake located west of Green Lake. Both lakes are meromictic, which means no seasonal mixing of surface and bottom waters occurs. Meromictic lakes are fairly rare; they have been extensively studied, in part because their sediments can preserve a historical record extending back thousands of years, and because of the euxinic conditions which can form in the deep water.

Chromatiaceae Family of purple sulfur bacteria

The Chromatiaceae are one of the two families of purple sulfur bacteria, together with the Ectothiorhodospiraceae. They belong to the order Chromatiales of the class Gammaproteobacteria, which is composed by unicellular Gram-negative organisms. Most of the species are photolithoautotrophs and conduct an anoxygenic photosynthesis, but there are also representatives capable of growing under dark and/or microaerobic conditions as either chemolithoautotrophs or chemoorganoheterotrophs.

Gammaproteobacteria Class of bacteria

Gammaproteobacteria is a class of bacteria in the phylum Pseudomonadota. It contains about 250 genera, which makes it the most genera-rich taxon of the Prokaryotes. Several medically, ecologically, and scientifically important groups of bacteria belong to this class. It is composed by all Gram-negative microbes and is the most phylogenetically and physiologically diverse class of Proteobacteria.

Lake Cadagno Body of water

Lake Cadagno is a meromictic lake in the Piora valley, Switzerland. As one of a few meromictic lakes in Europe, it is the object of numerous scientific studies. The Piora valley - located in the Saint-Gotthard Massif in the Southern part of Switzerland near Airolo at an altitude of 1921 m above sea level - is a landlocked alpine valley whose scientific value has been recognized for more than two centuries. In the past, the lake was used as a reservoir.

A chemocline is a type of cline, a layer of fluid with different properties, characterized by a strong, vertical chemistry gradient within a body of water. In bodies of water where chemoclines occur, the cline separates the upper and lower layers, resulting in different properties for those layers. The lower layer shows a change in the concentration of dissolved gases and solids compared to the upper layer.

<i>Rhodopseudomonas palustris</i> Species of bacterium

Rhodopseudomonas palustris is a rod-shaped, Gram-negative purple nonsulfur bacterium, notable for its ability to switch between four different modes of metabolism.

Flavocytochrome c sulfide dehydrogenase

Flavocytochrome c sulfide dehydrogenase, also known as Sulfide-cytochrome-c reductase (flavocytochrome c) (EC 1.8.2.3), is an enzyme with systematic name hydrogen-sulfide:flavocytochrome c oxidoreductase. It is found in sulfur-oxidising bacteria such as the purple phototrophic bacteria Allochromatium vinosum. This enzyme catalyses the following chemical reaction:

The Sippewissett microbial mat is a microbial mat in the Sippewissett Salt Marsh located along the lower eastern Buzzards Bay shoreline of Cape Cod, about 5 miles north of Woods Hole and 1 mile southwest of West Falmouth, Massachusetts, in the United States. The marsh has two regions, the Great Sippewisset Marsh to the north and Little Sippewisset Marsh to the south, separated from each other by a narrow tongue of land. The marsh extends into an estuary in which the intertidal zone provides a dynamic environment that supports a diverse ecology, including threatened and endangered species such as the roseate tern. The ecology of the salt marsh is based in and supported by the microbial mats which cover the ground of the marsh.

Chlorobium chlorochromatii, originally known as Chlorobium aggregatum, is a symbiotic green sulfur bacteria that performs anoxygenic photosynthesis and functions as an obligate photoautotroph using reduced sulfur species as electron donors. Chlorobium chlorochromatii can be found in stratified freshwater lakes.

Desulfocapsa thiozymogenes is an anaerobic, gram-negative bacterium. It disproportionates elemental sulfur. It is the type species of its genus.

Halorhodospira halophila is a species of Halorhodospira distinguished by its ability to grow optimally in an environment of 15–20% salinity. It was formerly called Ectothiorhodospira halophila. It is an anaerobic, rod-shaped Gram-negative bacterium. H. halophila has a flagellum.

Rhodobacter capsulatus is a species of purple bacteria, a group of bacteria that can obtain energy through photosynthesis. Its name is derived from the Latin adjective "capsulatus", itself derived Latin noun "capsula", and the associated Latin suffix for masculine nouns, "-atus".

Okenane

Okenane, the diagenetic end product of okenone, is a biomarker for Chromatiaceae, the purple sulfur bacteria. These anoxygenic phototrophs use light for energy and sulfide as their electron donor and sulfur source. Discovery of okenane in marine sediments implies a past euxinic environment, where water columns were anoxic and sulfidic. This is potentially tremendously important for reconstructing past oceanic conditions, but so far okenane has only been identified in one Paleoproterozoic rock sample from Northern Australia.

Euxinia or euxinic conditions occur when water is both anoxic and sulfidic. This means that there is no oxygen (O2) and a raised level of free hydrogen sulfide (H2S). Euxinic bodies of water are frequently strongly stratified, have an oxic, highly productive, thin surface layer, and have anoxic, sulfidic bottom water. The word euxinia is derived from the Greek name for the Black Sea (Εὔξεινος Πόντος (Euxeinos Pontos)) which translates to "hospitable sea". Euxinic deep water is a key component of the Canfield ocean, a model of oceans during the Proterozoic period (known as the Boring Billion) proposed by Donald Canfield, an American geologist, in 1998. There is still debate within the scientific community on both the duration and frequency of euxinic conditions in the ancient oceans. Euxinia is relatively rare in modern bodies of water, but does still happen in places like the Black Sea and certain fjords.

Thiobaca is a phototrophic and motile genus of bacteria from the family of Chromatiaceae with one known species. Thiobaca trueperi has been isolated from sediments from a eutrophic lake.

Thioflavicoccus is a Gram-negative, obligately phototrophic, strictly anaerobic and motile genus of bacteria from the family of Chromatiaceae with one known species.

<i>Pseudoblepharisma</i>

Pseudoblepharisma is a genus of heterotrich ciliates inhabiting oxygen depleted freshwater habitats. Most sources report that it contains one species, Pseudoblepharisma tenue, but at least four have been seen in literature.

References

  1. 1 2 3 4 5 6 7 8 9 10 Peduzzi, Sandro (2012-01-15). "Candidatus "Thiodictyon syntrophicum", sp. nov., a new purple sulfur bacterium isolated from the chemocline of Lake Cadagno forming aggregates and specific associations with Desulfocapsa sp" (PDF). Systematic and Applied Microbiology. 35 (3): 289–294. doi:10.1016/j.syapm.2012.01.001. PMID   22386960 via Elsevier.
  2. 1 2 3 Imhoff, Johannes F. (17 April 2015). "Thiodictyon". Bergey's Manual of Systematics of Archaea and Bacteria. pp. 1–4. doi:10.1002/9781118960608.gbm01119. ISBN   9781118960608.
  3. Luedin, Samuel M.; Storelli, Nicola; Danza, Francesco; Roman, Samuele; Wittwer, Matthias; Pothier, Joël F.; Tonolla, Mauro (2019-03-05). "Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium "Thiodictyon syntrophicum"". Frontiers in Microbiology. 10: 384. doi: 10.3389/fmicb.2019.00384 . ISSN   1664-302X. PMC   6413534 . PMID   30891015.
  4. 1 2 Peduzzi, Sandro; Tonolla, Mauro; Hahn, Dittmar (2003-07-01). "Isolation and characterization of aggregate-forming sulfate-reducing and purple sulfur bacteria from the chemocline of meromictic Lake Cadagno, Switzerland". FEMS Microbiology Ecology. 45 (1): 29–37. doi: 10.1016/S0168-6496(03)00107-7 . ISSN   0168-6496. PMID   19719604.
  5. 1 2 Muñoz-Gómez, SA; Kreutz, M; Hess, S (June 2021). "A microbial eukaryote with a unique combination of purple bacteria and green algae as endosymbionts". Science Advances. 7 (24). Bibcode:2021SciA....7.4102M. doi: 10.1126/sciadv.abg4102 . PMC   8195481 . PMID   34117067.
  6. Luedin, Samuel M.; Storelli, Nicola; Danza, Francesco; Roman, Samuele; Wittwer, Matthias; Pothier, Joël F.; Tonolla, Mauro (2018-09-18). "Anoxygenic Photosynthesis and Dark Carbon Metabolism under micro-oxic conditions in the Purple Sulfur Bacterium "Thiodictyon syntrophicum" nov. strain Cad16T". bioRxiv: 420927. doi:10.1101/420927. hdl: 11475/10946 . S2CID   91852022.
  7. Luedin, SM; Pothier, JF; Danza, F; Storelli, N; Frigaard, NU; Wittwer, M; Tonolla, M (2018). "Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno". Standards in Genomic Sciences. 13: 14. doi: 10.1186/s40793-018-0317-z . PMC   5944118 . PMID   29774086.
  8. "GTDB - Tree: g__Thiodictyon". gtdb.ecogenomic.org.
  9. 1 2 3 4 5 6 Storelli, Nicola; Peduzzi, Sandro; Saad, Maged M.; Frigaard, Niels-Ulrik; Perret, Xavier; Tonolla, Mauro (2013-05-01). "CO2 assimilation in the chemocline of Lake Cadagno is dominated by a few types of phototrophic purple sulfur bacteria". FEMS Microbiology Ecology. 84 (2): 421–432. doi: 10.1111/1574-6941.12074 . ISSN   0168-6496. PMID   23330958.