VPS29

Last updated
VPS29
Protein VPS29 PDB 1w24.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases VPS29 , DC15, PEP11, DC7, VPS29 retromer complex component, retromer complex component
External IDs OMIM: 606932 MGI: 1928344 HomoloGene: 9433 GeneCards: VPS29
Gene location (Human)
Ideogram human chromosome 12.svg
Chr. Chromosome 12 (human) [1]
Human chromosome 12 ideogram.svg
HSR 1996 II 3.5e.svg
Red rectangle 2x18.png
Band 12q24.11Start110,491,083 bp [1]
End110,502,111 bp [1]
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001282150
NM_001282151
NM_016226
NM_057180

NM_019780
NM_001347453
NM_001359226

RefSeq (protein)

NP_001269079
NP_001269080
NP_057310
NP_476528

NP_001334382
NP_062754
NP_001346155

Location (UCSC) Chr 12: 110.49 – 110.5 Mb Chr 5: 122.35 – 122.36 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

VPS29 is a human gene coding for the vacuolar protein sorting protein Vps29, a component of the retromer complex. [5]

Contents

Yeast homolog

The homologous protein (one that performs the same function) in yeast is Vacuolar protein sorting 29 homolog (S. cerevisiae). [6]

Function

VPS29 belongs to a group of genes coding for vacuolar protein sorting (VPS) proteins that, when functionally impaired, disrupt the efficient delivery of vacuolar hydrolases. [7] The protein encoded by this gene, Vps29, is a component of a large multimeric complex, termed the retromer complex, which is involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Vps29 may be involved in the formation of the inner shell of the retromer coat for retrograde vesicles leaving the prevacuolar compartment. [8] Alternative splice variants encoding different isoforms, and usage of multiple polyadenylation sites have been found for this gene. [6]

Related Research Articles

Retromer is a complex of proteins that has been shown to be important in recycling transmembrane receptors from endosomes to the trans-Golgi network (TGN).

SNX1 protein-coding gene in the species Homo sapiens

Sorting nexin-1 is a protein that in humans is encoded by the SNX1 gene. The protein encoded by this gene is a sorting nexin. SNX1 is a component of the retromer complex.

VPS35 protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 35 is a protein that in humans is encoded by the VPS35 gene.

VPS4A protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 4A is a protein that in humans is encoded by the VPS4A gene.

VPS4B protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 4B is a protein that in humans is encoded by the VPS4B gene.

SNX2 protein-coding gene in the species Homo sapiens

Sorting nexin-2 is a protein that in humans is encoded by the SNX2 gene.

VPS26A protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 26A is a protein that in humans is encoded by the VPS26A gene.

VPS28 protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 28 homolog is a protein that in humans is encoded by the VPS28 gene.

CHMP4B protein-coding gene in the species Homo sapiens

Charged multivesicular body protein 4b is a protein that in humans is encoded by the CHMP4B gene.

VPS45 protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 45 is a protein that in humans is encoded by the VPS45 gene.

VPS39 protein-coding gene in the species Homo sapiens

hVamp6/Vps39-like protein is a protein that in humans is encoded by the VPS39 gene.

VPS36 protein-coding gene in the species Homo sapiens

Vacuolar protein-sorting-associated protein 36 is a protein that in humans is encoded by the VPS36 gene.

VTA1 protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein VTA1 homolog is a protein that in humans is encoded by the VTA1 gene.

VPS11 protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 11 homolog is a protein that in humans is encoded by the VPS11 gene.

VPS18 protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 18 homolog is a protein that in humans is encoded by the VPS18 gene.

VPS13D protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 13D is a protein that in humans is encoded by the VPS13D gene.

VPS52 protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 52 homolog is a protein that in humans is encoded by the VPS52 gene.

VPS33A protein-coding gene in the species Homo sapiens

Vacuolar protein sorting-associated protein 33A is a protein that in humans is encoded by the VPS33A gene.

VPS25 protein-coding gene in the species Homo sapiens

Vacuolar protein-sorting-associated protein 25 is a protein that in humans is encoded by the VPS25 gene.

VPS26B protein-coding gene in the species Homo sapiens

Vacuolar protein sorting 26 homolog B is a protein in humans that is encoded by the VPS26B gene.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000111237 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000029462 - Ensembl, May 2017
  3. ↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ↑ Edgar AJ, Polak JM (November 2000). "Human homologues of yeast vacuolar protein sorting 29 and 35". Biochem. Biophys. Res. Commun. 277 (3): 622–30. doi:10.1006/bbrc.2000.3727. PMID   11062004.
  6. 1 2 "Entrez Gene: VPS29 vacuolar protein sorting 29 homolog (S. cerevisiae)".
  7. ↑ Haft CR, de la Luz Sierra M, Bafford R, Lesniak MA, Barr VA, Taylor SI (December 2000). "Human Orthologs of Yeast Vacuolar Protein Sorting Proteins Vps26, 29, and 35: Assembly into Multimeric Complexes". Mol. Biol. Cell. 11 (12): 4105–16. doi:10.1091/mbc.11.12.4105. PMC   15060 . PMID   11102511.
  8. ↑ Bonifacino JS, Hurley JH (August 2008). "Retromer". Curr. Opin. Cell Biol. 20 (4): 427–36. doi:10.1016/j.ceb.2008.03.009. PMC   2833274 . PMID   18472259.

Further reading