VTA1

VTA1
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	2LXL, 2LXM, 4TXP, 4TXQ, 4TXR, 4U7E
Identifiers
Aliases	VTA1 , C6orf55, DRG-1, DRG1, LIP5, My012, SBP1, HSPC228, vesicle trafficking 1, 6orf55
External IDs	OMIM: 610902 MGI: 1913451 HomoloGene: 6473 GeneCards: VTA1
Gene location (Human)
Chr.	Chromosome 6 (human)
End	142,224,685 bp
Gene location (Mouse)
Chr.	Chromosome 10 (mouse)
End	14,581,304 bp
RNA expression pattern
	Top expressed in
	ganglionic eminence; ; pancreatic epithelial cell; ; amniotic fluid; ; deltoid muscle; ; tibialis anterior muscle; ; islet of Langerhans; ; vastus lateralis muscle; ; rectum; ; human penis; ; endothelial cell;
	Top expressed in
	medial ganglionic eminence; ; secondary oocyte; ; yolk sac; ; superior frontal gyrus; ; hair follicle; ; molar; ; calvaria; ; stomach; ; pyloric antrum; ; cerebellar cortex;
	More reference expression data
	n/a
Gene ontology
Molecular function	protein C-terminus binding ; protein binding ;
Cellular component	cytoplasm ; cytosol ; endosome ; endosome membrane ; extracellular exosome ; membrane ; nucleoplasm ; intracellular membrane-bounded organelle ;
Biological process	protein transport ; endosomal transport ; multivesicular body assembly ; viral life cycle ; multivesicular body sorting pathway ; ESCRT III complex disassembly ; macroautophagy ; transport ;
	Sources:Amigo / QuickGO
Orthologs
	51534
	66201
	ENSG00000009844
	ENSMUSG00000019868
	Q9NP79
	Q9CR26
	NM_016485 ; NM_001286371 ; NM_001286372
	NM_025418
	NP_001273300 ; NP_001273301 ; NP_057569
	NP_079694
	Wikidata
View/Edit Human	View/Edit Mouse

Last updated October 14, 2022

Vacuolar protein sorting-associated protein VTA1 homolog is a protein that in humans is encoded by the VTA1 gene.^[5]^[6]

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References

1 2 3 GRCh38: Ensembl release 89: ENSG00000009844 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000019868 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ Shi J, Cai W, Chen X, Ying K, Zhang K, Xie Y (Aug 2001). "Identification of dopamine responsive mRNAs in glial cells by suppression subtractive hybridization". Brain Res. 910 (1–2): 29–37. doi:10.1016/S0006-8993(01)02393-9. PMID 11489251. S2CID 43814085.
↑ "Entrez Gene: C6orf55 chromosome 6 open reading frame 55".

Andersson B, Wentland MA, Ricafrente JY, et al. (1996). "A "double adaptor" method for improved shotgun library construction". Anal. Biochem. 236 (1): 107–13. doi:10.1006/abio.1996.0138. PMID 8619474.
Yu W, Andersson B, Worley KC, et al. (1997). "Large-scale concatenation cDNA sequencing". Genome Res. 7 (4): 353–8. doi:10.1101/gr.7.4.353. PMC 139146 . PMID 9110174.
Zhang QH, Ye M, Wu XY, et al. (2001). "Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells". Genome Res. 10 (10): 1546–60. doi:10.1101/gr.140200. PMC 310934 . PMID 11042152.
Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072 . PMID 11230166.
Tchernev VT, Mansfield TA, Giot L, et al. (2002). "The Chediak-Higashi protein interacts with SNARE complex and signal transduction proteins". Mol. Med. 8 (1): 56–64. doi:10.1007/bf03402003. PMC 2039936 . PMID 11984006.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC 139241 . PMID 12477932.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID 14702039.
Fujita H, Umezuki Y, Imamura K, et al. (2005). "Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B". J. Cell Sci. 117 (Pt 14): 2997–3009. doi: 10.1242/jcs.01170 . PMID 15173323.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928 . PMID 15489334.
Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000009844 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000019868 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid11489251-5] Shi J, Cai W, Chen X, Ying K, Zhang K, Xie Y (Aug 2001). "Identification of dopamine responsive mRNAs in glial cells by suppression subtractive hybridization". Brain Res. 910 (1–2): 29–37. doi:10.1016/S0006-8993(01)02393-9. PMID 11489251. S2CID 43814085.

[entrez-6] "Entrez Gene: C6orf55 chromosome 6 open reading frame 55".

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[2]

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[4]

[5]

[6]

VTA1

Related Research Articles

References

Further reading