ZNF184

ZNF184
Identifiers
Aliases	ZNF184 , kr-ZNF3, zinc finger protein 184
External IDs	OMIM: 602277 MGI: 1922244 HomoloGene: 113602 GeneCards: ZNF184
Gene location (Human) Chr. Chromosome 6 (human) [1] Band 6p22.1 Start 27,450,743 bp [1] End 27,473,118 bp [1]
Gene location (Mouse) Chr. Chromosome 13 (mouse) [2] Band 13|13 A3.1 Start 22,129,264 bp [2] End 22,144,949 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in Brodmann area 23 sperm hair follicle middle temporal gyrus endothelial cell germinal epithelium ganglionic eminence oocyte visceral pleura Region I of hippocampus proper Top expressed in spermatid spermatocyte hand ganglionic eminence secondary oocyte outer nuclear layer medial ganglionic eminence abdominal wall seminiferous tubule primitive streak More reference expression data BioGPS n/a
Gene ontology Molecular function DNA binding zinc ion binding metal ion binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific Cellular component intracellular anatomical structure nucleus Biological process regulation of transcription, DNA-templated transcription, DNA-templated regulation of transcription by RNA polymerase II Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 7738 193452 Ensembl ENSG00000096654 ENSMUSG00000006720 UniProt Q99676 Q7TSH9 RefSeq (mRNA) NM_007149 NM_001318891 NM_001318892 NM_001318893 NM_001347832 NM_183014 NM_001360886 RefSeq (protein) NP_001305820 NP_001305821 NP_001305822 NP_001334761 NP_009080 NP_898835 NP_001347815 Location (UCSC) Chr 6: 27.45 – 27.47 Mb Chr 13: 22.13 – 22.14 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Zinc finger protein 184, also known as ZNF184, is a protein that in humans is encoded by the ZNF184 gene ^[5] on chromosome 6. It was first identified by Goldwurm et al. in 1996. ^[6]

The National Center for Biotechnology Information (NCBI) Gene database entry ^[5] for ZNF184 identifies conserved domains KRAB_A (Krüppel associated box) near the N-terminus and Zn-finger (Zinc finger) at the C-terminus of the translated protein. The former is associated with transcription repression ^[7] and the latter with DNA binding (see Zinc finger).

Domains and Structure

The figure below is a reformatted and annotated conceptual translation display of ZNF184's Consensus CDS. ^[8] CCDS displays exons in alternating black and blue font, with red indicating a residue coded across a splice boundary.

ZNF184 has 19 zinc finger motifs at the end of its final and longest exon. The figure shows regularity among the fingers in this protein, including the 2 columns of green-highlighted Cysteine residues and the 2 columns of blue-highlighted His residues which are the reason this type of zinc finger is called C2H2. Light grey highlighted columns (one with all F; one with mostly L, and F substitutions) are highly conserved hydrophobic residues within the zinc finger motif. The other light grey highlighted column (mostly K, with a similar R substitution) is an example of fairly strong conservation in the coil sections connecting adjacent fingers.

Near the N-terminus is a KRAB_A domain followed by a KRAB_B domain. KRAB_A has a shorter α-Helix followed by a longer α-Helix. The KRAB_A motif in a zinc finger protein is known to bind with a KAP-1 protein (aka TRIM28) to accomplish a transcription repressor function, however a gene so regulated by ZNF184 has yet to be identified. The length-11 finger helices are indicated, as well as the overlapping 7-residue section in each finger which binds targeted DNA (if the finger is functioning).

Reformatted Protein

References

1. GRCh38: Ensembl release 89: ENSG00000096654 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000006720 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: zinc finger protein 184".
6. Goldwurm S, Menzies ML, Banyer JL, Powell LW, Jazwinska EC (1997-03-15). "Identification of a novel Krueppel-related zinc finger gene (ZNF184) mapping to 6p21.3". Genomics. 40 (3): 486–9. doi:10.1006/geno.1996.4583. PMID   9073517.
7. Peng H, Begg GE, Harper SL, Friedman JR, Speicher DW, Rauscher III FJ (2000-03-30). "Biochemical Analysis of the Kruppel-associated Box (KRAB) Transcriptional Repression Domain". Journal of Biological Chemistry. 275 (24): 18000–10. doi: 10.1074/jbc.M001499200 . PMID   10748030.
8. "Consensus CDS: zinc finger protein 184".

Further reading

• Iuchi, Shiro; Kuldell, Natalie, eds. (2005). Zinc Finger Proteins: From Atomic Contact to Cellular Function. Molecular Biology Intelligence Unit. Landes Bioscience/Eurekah.com and Kluwer Academic/Plenum Publishers. ISBN   978-0-306-48229-8.
• Shi J, Levinson DF, Duan J, et al. (2009). "Common variants on chromosome 6p22.1 are associated with schizophrenia". Nature. 460 (7256): 753–7. Bibcode:2009Natur.460..753S. doi:10.1038/nature08192. PMC   2775422 . PMID   19571809.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID   14702039.
• Bonaldo MF, Lennon G, Soares MB (1996). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Res. 6 (9): 791–806. doi: 10.1101/gr.6.9.791 . PMID   8889548.
• Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC   1356129 . PMID   16344560.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2002). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Ravasi T, Suzuki H, Cannistraci CV, et al. (2010). "An atlas of combinatorial transcriptional regulation in mouse and man". Cell. 140 (5): 744–52. doi:10.1016/j.cell.2010.01.044. PMC   2836267 . PMID   20211142.
• Barbe L, Lundberg E, Oksvold P, et al. (2008). "Toward a confocal subcellular atlas of the human proteome". Mol. Cell. Proteomics. 7 (3): 499–508. doi: 10.1074/mcp.M700325-MCP200 . PMID   18029348.