ARF1

ARF1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1HUR, 1RE0, 1U81, 3O47, 4HMY, 1R8Q, 1RRG, 1RRF
Identifiers
Aliases	ARF1 , ADP ribosylation factor 1, PVNH8
External IDs	OMIM: 103180 MGI: 99431 HomoloGene: 133930 GeneCards: ARF1
Gene location (Human) Chr. Chromosome 1 (human) [1] Band 1q42.13 Start 228,082,660 bp [1] End 228,099,212 bp [1]
Gene location (Mouse) Chr. Chromosome 11 (mouse) [2] Band 11|11 B1.3 Start 59,102,238 bp [2] End 59,119,096 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in stromal cell of endometrium pituitary gland anterior pituitary corpus epididymis right lung upper lobe of lung upper lobe of left lung left uterine tube caput epididymis canal of the cervix Top expressed in yolk sac ankle joint superior frontal gyrus lip esophagus morula spermatocyte neural tube spermatid proximal tubule More reference expression data BioGPS More reference expression data
Gene ontology Molecular function phospholipase D activator activity nucleotide binding GTP binding magnesium ion binding GTPase activity GDP binding protein binding RNA binding protein domain specific binding protein heterodimerization activity Cellular component extracellular exosome late endosome cytoplasm synapse trans-Golgi network Golgi apparatus cell junction endomembrane system peroxisomal membrane cell leading edge neuron projection postsynaptic density postsynaptic membrane membrane focal adhesion intracellular anatomical structure perinuclear region of cytoplasm sarcomere COPI-coated vesicle cytosol Golgi membrane plasma membrane protein-containing complex glutamatergic synapse Biological process positive regulation of endocytosis positive regulation of protein secretion very-low-density lipoprotein particle assembly mitigation of host defenses by virus positive regulation of calcium ion-dependent exocytosis regulation of receptor internalization synaptic vesicle budding small GTPase mediated signal transduction cellular copper ion homeostasis long-term depression antigen processing and presentation of exogenous peptide antigen via MHC class II Golgi to transport vesicle transport post-Golgi vesicle-mediated transport actin filament organization lysosomal membrane organization positive regulation of ER to Golgi vesicle-mediated transport dendritic spine organization regulation of phospholipid metabolic process regulation of Arp2/3 complex-mediated actin nucleation positive regulation of late endosome to lysosome transport protein transport phosphatidylinositol biosynthetic process positive regulation of sodium ion transmembrane transport vesicle-mediated transport positive regulation of catalytic activity positive regulation of dendritic spine development mitotic cleavage furrow ingression interleukin-12-mediated signaling pathway transport intracellular protein transport Golgi to plasma membrane transport postsynaptic actin cytoskeleton organization Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 375 11840 Ensembl ENSG00000143761 ENSMUSG00000048076 UniProt P84077 P84078 RefSeq (mRNA) NM_001658 NM_001024226 NM_001024227 NM_001024228 NM_001130408 NM_007476 RefSeq (protein) NP_001019397 NP_001019398 NP_001019399 NP_001649 NP_001123880 NP_031502 Location (UCSC) Chr 1: 228.08 – 228.1 Mb Chr 11: 59.1 – 59.12 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

ADP-ribosylation factor 1 is a protein that in humans is encoded by the ARF1 gene. ^[5]

Function

ADP-ribosylation factor 1 (ARF1) is a member of the human ARF gene family. The family members encode small guanine nucleotide-binding proteins that stimulate the ADP-ribosyltransferase activity of cholera toxin and play a role in vesicular trafficking as activators of phospholipase D. The gene products, including 6 ARF proteins and 11 ARF-like proteins, constitute a family of the RAS superfamily. The ARF proteins are categorized as class I (ARF1, ARF2 and ARF3), class II (ARF4 and ARF5) and class III (ARF6), and members of each class share a common gene organization. The ARF1 protein is localized to the Golgi apparatus and has a central role in intra-Golgi transport. Multiple alternatively spliced transcript variants encoding the same protein have been found for this gene. ^[6]

The major mechanism of action of Brefeldin A is through inhibition of ARF1.

Interactions

ARF1 has been shown to interact with:

• CHRM3, ^[7]
• COPB1, ^{[8] [9]}
• GGA3, ^{[10] [11]} and
• PLD2. ^{[12] [13]}

References

1. GRCh38: Ensembl release 89: ENSG00000143761 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000048076 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Lee CM, Haun RS, Tsai SC, Moss J, Vaughan M (June 1992). "Characterization of the human gene encoding ADP-ribosylation factor 1, a guanine nucleotide-binding activator of cholera toxin". J Biol Chem. 267 (13): 9028–34. doi: 10.1016/S0021-9258(19)50383-0 . PMID   1577740.
6. "Entrez Gene: ARF1 ADP-ribosylation factor 1".
7. Mitchell R, Robertson DN, Holland PJ, Collins D, Lutz EM, Johnson MS (September 2003). "ADP-ribosylation factor-dependent phospholipase D activation by the M3 muscarinic receptor". J. Biol. Chem. 278 (36): 33818–30. doi: 10.1074/jbc.M305825200 . PMID   12799371.
8. Fischer KD, Helms JB, Zhao L, Wieland FT (April 2000). "Site-specific photocrosslinking to probe interactions of Arf1 with proteins involved in budding of COPI vesicles". Methods. 20 (4): 455–64. doi:10.1006/meth.2000.0958. PMID   10720466.
9. Eugster A, Frigerio G, Dale M, Duden R (August 2000). "COP I domains required for coatomer integrity, and novel interactions with ARF and ARF-GAP". EMBO J. 19 (15): 3905–17. doi:10.1093/emboj/19.15.3905. PMC   306616 . PMID   10921873.
10. Dell'Angelica EC, Puertollano R, Mullins C, Aguilar RC, Vargas JD, Hartnell LM, Bonifacino JS (April 2000). "GGAs: a family of ADP ribosylation factor-binding proteins related to adaptors and associated with the Golgi complex". J. Cell Biol. 149 (1): 81–94. doi:10.1083/jcb.149.1.81. PMC   2175099 . PMID   10747089.
11. Puertollano R, Randazzo PA, Presley JF, Hartnell LM, Bonifacino JS (April 2001). "The GGAs promote ARF-dependent recruitment of clathrin to the TGN". Cell. 105 (1): 93–102. doi: 10.1016/s0092-8674(01)00299-9 . PMID   11301005. S2CID   1158816.
12. Lee S, Park JB, Kim JH, Kim Y, Kim JH, Shin KJ, Lee JS, Ha SH, Suh PG, Ryu SH (July 2001). "Actin directly interacts with phospholipase D, inhibiting its activity". J. Biol. Chem. 276 (30): 28252–60. doi: 10.1074/jbc.M008521200 . PMID   11373276.
13. Park JB, Kim JH, Kim Y, Ha SH, Yoo JS, Du G, Frohman MA, Suh PG, Ryu SH (July 2000). "Cardiac phospholipase D2 localizes to sarcolemmal membranes and is inhibited by alpha-actinin in an ADP-ribosylation factor-reversible manner". J. Biol. Chem. 275 (28): 21295–301. doi: 10.1074/jbc.M002463200 . PMID   10801846.

Further reading

• Serafini T, Orci L, Amherdt M, et al. (1991). "ADP-ribosylation factor is a subunit of the coat of Golgi-derived COP-coated vesicles: a novel role for a GTP-binding protein". Cell. 67 (2): 239–53. doi: 10.1016/0092-8674(91)90176-Y . PMID   1680566. S2CID   9766090.
• Kahn RA, Kern FG, Clark J, et al. (1991). "Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins". J. Biol. Chem. 266 (4): 2606–14. doi: 10.1016/S0021-9258(18)52288-2 . PMID   1899243.
• Stearns T, Willingham MC, Botstein D, Kahn RA (1990). "ADP-ribosylation factor is functionally and physically associated with the Golgi complex". Proc. Natl. Acad. Sci. U.S.A. 87 (3): 1238–42. Bibcode:1990PNAS...87.1238S. doi: 10.1073/pnas.87.3.1238 . PMC   53446 . PMID   2105501.
• Bobak DA, Nightingale MS, Murtagh JJ, et al. (1989). "Molecular cloning, characterization, and expression of human ADP-ribosylation factors: two guanine nucleotide-dependent activators of cholera toxin". Proc. Natl. Acad. Sci. U.S.A. 86 (16): 6101–5. Bibcode:1989PNAS...86.6101B. doi: 10.1073/pnas.86.16.6101 . PMC   297783 . PMID   2474826.
• Greasley SE, Jhoti H, Teahan C, et al. (1995). "The structure of rat ADP-ribosylation factor-1 (ARF-1) complexed to GDP determined from two different crystal forms". Nat. Struct. Biol. 2 (9): 797–806. doi:10.1038/nsb0995-797. PMID   7552752. S2CID   9461256.
• Welsh CF, Moss J, Vaughan M (1995). "ADP-ribosylation factors: a family of approximately 20-kDa guanine nucleotide-binding proteins that activate cholera toxin". Mol. Cell. Biochem. 138 (1–2): 157–66. doi:10.1007/BF00928458. PMID   7898460. S2CID   42819002.
• Greasley S, Jhoti H, Fensome AC, et al. (1995). "Crystallization and preliminary X-ray diffraction studies on ADP-ribosylation factor 1". J. Mol. Biol. 244 (5): 651–3. doi:10.1006/jmbi.1994.1759. PMID   7990146.
• Amor JC, Harrison DH, Kahn RA, Ringe D (1994). "Structure of the human ADP-ribosylation factor 1 complexed with GDP". Nature. 372 (6507): 704–8. Bibcode:1994Natur.372..704C. doi:10.1038/372704a0. PMID   7990966. S2CID   4362056.
• Dascher C, Balch WE (1994). "Dominant inhibitory mutants of ARF1 block endoplasmic reticulum to Golgi transport and trigger disassembly of the Golgi apparatus". J. Biol. Chem. 269 (2): 1437–48. doi: 10.1016/S0021-9258(17)42277-0 . PMID   8288610.
• Rümenapp U, Geiszt M, Wahn F, et al. (1996). "Evidence for ADP-ribosylation-factor-mediated activation of phospholipase D by m3 muscarinic acetylcholine receptor". Eur. J. Biochem. 234 (1): 240–4. doi: 10.1111/j.1432-1033.1995.240_c.x . PMID   8529647.
• Andersson B, Wentland MA, Ricafrente JY, et al. (1996). "A "double adaptor" method for improved shotgun library construction". Anal. Biochem. 236 (1): 107–13. doi:10.1006/abio.1996.0138. PMID   8619474.
• Hirai M, Kusuda J, Hashimoto K (1997). "Assignment of human ADP ribosylation factor (ARF) genes ARF1 and ARF3 to chromosomes 1q42 and 12q13, respectively". Genomics. 34 (2): 263–5. doi:10.1006/geno.1996.0283. PMID   8661066.
• Kanoh H, Williger BT, Exton JH (1997). "Arfaptin 1, a putative cytosolic target protein of ADP-ribosylation factor, is recruited to Golgi membranes". J. Biol. Chem. 272 (9): 5421–9. doi: 10.1074/jbc.272.9.5421 . PMID   9038142.
• Yu W, Andersson B, Worley KC, et al. (1997). "Large-scale concatenation cDNA sequencing". Genome Res. 7 (4): 353–8. doi:10.1101/gr.7.4.353. PMC   139146 . PMID   9110174.
• Shome K, Vasudevan C, Romero G (1997). "ARF proteins mediate insulin-dependent activation of phospholipase D". Curr. Biol. 7 (6): 387–96. doi: 10.1016/S0960-9822(06)00186-2 . PMID   9197239. S2CID   9609409.
• Frank S, Upender S, Hansen SH, Casanova JE (1998). "ARNO is a guanine nucleotide exchange factor for ADP-ribosylation factor 6". J. Biol. Chem. 273 (1): 23–7. doi: 10.1074/jbc.273.1.23 . PMID   9417041.
• Betz SF, Schnuchel A, Wang H, et al. (1998). "Solution structure of the cytohesin-1 (B2-1) Sec7 domain and its interaction with the GTPase ADP ribosylation factor 1". Proc. Natl. Acad. Sci. U.S.A. 95 (14): 7909–14. Bibcode:1998PNAS...95.7909B. doi: 10.1073/pnas.95.14.7909 . PMC   20903 . PMID   9653114.
• Kim JH, Lee SD, Han JM, et al. (1998). "Activation of phospholipase D1 by direct interaction with ADP-ribosylation factor 1 and RalA". FEBS Lett. 430 (3): 231–5. doi:10.1016/S0014-5793(98)00661-9. PMID   9688545. S2CID   36075513.
• Huber I, Cukierman E, Rotman M, et al. (1998). "Requirement for both the amino-terminal catalytic domain and a noncatalytic domain for in vivo activity of ADP-ribosylation factor GTPase-activating protein". J. Biol. Chem. 273 (38): 24786–91. doi: 10.1074/jbc.273.38.24786 . PMID   9733781.

External links

• Human ARF1 genome location and ARF1 gene details page in the UCSC Genome Browser .