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An electron transport chain (ETC) is a series of protein complexes and other molecules that transfer electrons from electron donors to electron acceptors via redox reactions (both reduction and oxidation occurring simultaneously) and couples this electron transfer with the transfer of protons (H+ ions) across a membrane. Many of the enzymes in the electron transport chain are embedded within the membrane.
A taxis is the movement of an organism in response to a stimulus such as light or the presence of food. Taxes are innate behavioural responses. A taxis differs from a tropism in that in the case of taxis, the organism has motility and demonstrates guided movement towards or away from the stimulus source. It is sometimes distinguished from a kinesis, a non-directional change in activity in response to a stimulus.
A facultative anaerobic organism is an organism that makes ATP by aerobic respiration if oxygen is present, but is capable of switching to fermentation if oxygen is absent.
In oceanography and limnology, the sediment–water interface is the boundary between bed sediment and the overlying water column. The term usually refers to a thin layer of water at the very surface of sediments on the seafloor. In the ocean, estuaries, and lakes, this layer interacts with the water above it through physical flow and chemical reactions mediated by the micro-organisms, animals, and plants living at the bottom of the water body. The topography of this interface is often dynamic, as it is affected by physical processes and biological processes. Physical, biological, and chemical processes occur at the sediment-water interface as a result of a number of gradients such as chemical potential gradients, pore water gradients, and oxygen gradients.
Magnetotaxis is a process implemented by a diverse group of Gram-negative bacteria that involves orienting and coordinating movement in response to Earth's magnetic field. This process is mainly carried out by microaerophilic and anaerobic bacteria found in aquatic environments such as salt marshes, seawater, and freshwater lakes. By sensing the magnetic field, the bacteria are able to orient themselves towards environments with more favorable oxygen concentrations. This orientation towards more favorable oxygen concentrations allows the bacteria to reach these environments faster as opposed to random movement through Brownian motion.
Magnetotactic bacteria are a polyphyletic group of bacteria that orient themselves along the magnetic field lines of Earth's magnetic field. Discovered in 1963 by Salvatore Bellini and rediscovered in 1975 by Richard Blakemore, this alignment is believed to aid these organisms in reaching regions of optimal oxygen concentration. To perform this task, these bacteria have organelles called magnetosomes that contain magnetic crystals. The biological phenomenon of microorganisms tending to move in response to the environment's magnetic characteristics is known as magnetotaxis. However, this term is misleading in that every other application of the term taxis involves a stimulus-response mechanism. In contrast to the magnetoreception of animals, the bacteria contain fixed magnets that force the bacteria into alignment—even dead cells are dragged into alignment, just like a compass needle.
Beggiatoa is a genus of Gammaproteobacteria belonging to the order Thiotrichales, in the Pseudomonadota phylum. These bacteria form colorless filaments composed of cells that can be up to 200 μm in diameter, and are one of the largest prokaryotes on Earth. Beggiatoa are chemolithotrophic sulfur-oxidizers, using reduced sulfur species as an energy source. They live in sulfur-rich environments such as soil, both marine and freshwater, in the deep sea hydrothermal vents, and in polluted marine environments. In association with other sulfur bacteria, e.g. Thiothrix, they can form biofilms that are visible to the naked eye as mats of long white filaments; the white color is due to sulfur globules stored inside the cells.
The Winogradsky column is a simple device for culturing a large diversity of microorganisms. Invented in the 1880s by Sergei Winogradsky, the device is a column of pond mud and water mixed with a carbon source such as newspaper, blackened marshmallows or egg-shells, and a sulfur source such as gypsum or egg yolk. Incubating the column in sunlight for months results in an aerobic/anaerobic gradient as well as a sulfide gradient. These two gradients promote the growth of different microorganisms such as Clostridium, Desulfovibrio, Chlorobium, Chromatium, Rhodomicrobium, and Beggiatoa, as well as many other species of bacteria, cyanobacteria, and algae.
Microbial fuel cell (MFC) is a type of bioelectrochemical fuel cell system also known as micro fuel cell that generates electric current by diverting electrons produced from the microbial oxidation of reduced compounds on the anode to oxidized compounds such as oxygen on the cathode through an external electrical circuit. MFCs produce electricity by using the electrons derived from biochemical reactions catalyzed by bacteria.Comprehensive Biotechnology MFCs can be grouped into two general categories: mediated and unmediated. The first MFCs, demonstrated in the early 20th century, used a mediator: a chemical that transfers electrons from the bacteria in the cell to the anode. Unmediated MFCs emerged in the 1970s; in this type of MFC the bacteria typically have electrochemically active redox proteins such as cytochromes on their outer membrane that can transfer electrons directly to the anode. In the 21st century MFCs have started to find commercial use in wastewater treatment.
Bacteria are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria play a vital role in many stages of the nutrient cycle by recycling nutrients and the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in mutualistic, commensal and parasitic relationships with plants and animals. Most bacteria have not been characterised and there are many species that cannot be grown in the laboratory. The study of bacteria is known as bacteriology, a branch of microbiology.
Shewanella is the sole genus included in the marine bacteria family Shewanellaceae. Some species within it were formerly classed as Alteromonas. Shewanella consists of facultatively anaerobic Gram-negative rods, most of which are found in extreme aquatic habitats where the temperature is very low and the pressure is very high. Shewanella bacteria are a normal component of the surface flora of fish and are implicated in fish spoilage. Shewanella chilikensis, a species of the genus Shewanella commonly found in the marine sponges of Saint Martin's Island of the Bay of Bengal, Bangladesh.
Shewanella oneidensis is a bacterium notable for its ability to reduce metal ions and live in environments with or without oxygen. This proteobacterium was first isolated from Lake Oneida, NY in 1988, hence its name.
Bacterial motility is the ability of bacteria to move independently using metabolic energy. Most motility mechanisms that evolved among bacteria also evolved in parallel among the archaea. Most rod-shaped bacteria can move using their own power, which allows colonization of new environments and discovery of new resources for survival. Bacterial movement depends not only on the characteristics of the medium, but also on the use of different appendages to propel. Swarming and swimming movements are both powered by rotating flagella. Whereas swarming is a multicellular 2D movement over a surface and requires the presence of surfactants, swimming is movement of individual cells in liquid environments.
A microbial mat is a multi-layered sheet of microorganisms, mainly bacteria and archaea, or bacteria alone. Microbial mats grow at interfaces between different types of material, mostly on submerged or moist surfaces, but a few survive in deserts. A few are found as endosymbionts of animals.
A biobattery is an energy storing device that is powered by organic compounds. Although the batteries have never been commercially sold, they are still being tested, and several research teams and engineers are working to further advance the development of these batteries.
Bacterial nanowires are electrically conductive appendages produced by a number of bacteria most notably from the Geobacter and Shewanella genera. Conductive nanowires have also been confirmed in the oxygenic cyanobacterium Synechocystis PCC6803 and a thermophilic, methanogenic coculture consisting of Pelotomaculum thermopropionicum and Methanothermobacter thermoautotrophicus. From physiological and functional perspectives, bacterial nanowires are diverse. The precise role microbial nanowires play in their biological systems has not been fully realized, but several proposed functions exist. Outside of a naturally occurring environment, bacterial nanowires have shown potential to be useful in several fields, notably the bioenergy and bioremediation industries.
An exoelectrogen normally refers to a microorganism that has the ability to transfer electrons extracellularly. While exoelectrogen is the predominant name, other terms have been used: electrochemically active bacteria, anode respiring bacteria, and electricigens. Electrons exocytosed in this fashion are produced following ATP production using an electron transport chain (ETC) during oxidative phosphorylation. Conventional cellular respiration requires a final electron acceptor to receive these electrons. Cells that use molecular oxygen (O2) as their final electron acceptor are described as using aerobic respiration, while cells that use other soluble compounds as their final electron acceptor are described as using anaerobic respiration. However, the final electron acceptor of an exoelectrogen is found extracellularly and can be a strong oxidizing agent in aqueous solution or a solid conductor/electron acceptor. Two commonly observed acceptors are iron compounds (specifically Fe(III) oxides) and manganese compounds (specifically Mn(III/IV) oxides). As oxygen is a strong oxidizer, cells are able to do this strictly in the absence of oxygen.
Mariprofundus ferrooxydans is a neutrophilic, chemolithotrophic, Gram-negative bacterium which can grow by oxidising ferrous to ferric iron. It is one of the few members of the class Zetaproteobacteria in the phylum Pseudomonadota. It is typically found in iron-rich deep sea environments, particularly at hydrothermal vents. M. ferrooxydans characteristically produces stalks of solid iron oxyhydroxides that form into iron mats. Genes that have been proposed to catalyze Fe(II) oxidation in M. ferrooxydans are similar to those involved in known metal redox pathways, and thus it serves as a good candidate for a model iron oxidizing organism.
Dissimilatory metal-reducing microorganisms are a group of microorganisms (both bacteria and archaea) that can perform anaerobic respiration utilizing a metal as terminal electron acceptor rather than molecular oxygen (O2), which is the terminal electron acceptor reduced to water (H2O) in aerobic respiration. The most common metals used for this end are iron [Fe(III)] and manganese [Mn(IV)], which are reduced to Fe(II) and Mn(II) respectively, and most microorganisms that reduce Fe(III) can reduce Mn(IV) as well. But other metals and metalloids are also used as terminal electron acceptors, such as vanadium [V(V)], chromium [Cr(VI)], molybdenum [Mo(VI)], cobalt [Co(III)], palladium [Pd(II)], gold [Au(III)], and mercury [Hg(II)].
Social motility describes the motile movement of groups of cells that communicate with each other to coordinate movement based on external stimuli. There are multiple varieties of each kingdom that express social motility that provides a unique evolutionary advantages that other species do not possess. This has made them lethal killers such as African trypanosomiasis, or Myxobacteria. These evolutionary advantages have proven to increase survival rate among socially motile bacteria whether it be the ability to evade predators or communication within a swarm to form spores for long term hibernation in times of low nutrients or toxic environments.
References
- 1 2 3 4 Stricker, Laura; Guido, Isabella; Breithaupt, Thomas; Mazza, Marco G.; Vollmer, Jürgen (2020-10-28). "Hybrid sideways/longitudinal swimming in the monoflagellate Shewanella oneidensis: from aerotactic band to biofilm". Journal of the Royal Society Interface. 17 (171): 20200559. doi:10.1098/rsif.2020.0559. PMC 7653395 . PMID 33109020.
- ↑ Hölscher, Theresa; Bartels, Benjamin; Lin, Yu-Cheng; Gallegos-Monterrosa, Ramses; Price-Whelan, Alexa; Kolter, Roberto; Dietrich, Lars E. P.; Kovács, Ákos T. (2015-11-20). "Motility, chemotaxis and aerotaxis contribute to competitiveness during bacterial pellicle biofilm development". Journal of Molecular Biology. 427 (23): 3695–3708. doi:10.1016/j.jmb.2015.06.014. ISSN 0022-2836. PMC 4804472 . PMID 26122431.
- ↑ Mazzag, B. C.; Zhulin, I. B.; Mogilner, A. (2003-12-01). "Model of Bacterial Band Formation in Aerotaxis". Biophysical Journal. 85 (6): 3558–3574. Bibcode:2003BpJ....85.3558M. doi:10.1016/S0006-3495(03)74775-4. ISSN 0006-3495. PMC 1303662 . PMID 14645050.
- ↑ Taylor, Barry L.; Zhulin, Igor B.; Johnson, Mark S. (1999-10-01). "Aerotaxis and Other Energy-Sensing Behavior in Bacteria". Annual Review of Microbiology. 53 (1): 103–128. doi:10.1146/annurev.micro.53.1.103. ISSN 0066-4227. PMID 10547687.
- ↑ Popp, Felix; Armitage, Judith P.; Schüler, Dirk (2014-11-14). "Polarity of bacterial magnetotaxis is controlled by aerotaxis through a common sensory pathway". Nature Communications. 5 (1): 5398. Bibcode:2014NatCo...5.5398P. doi: 10.1038/ncomms6398 . ISSN 2041-1723. PMID 25394370.