Magnetite is a mineral and one of the main iron ores, with the chemical formula Fe2+Fe3+2O4. It is one of the oxides of iron, and is ferrimagnetic; it is attracted to a magnet and can be magnetized to become a permanent magnet itself. With the exception of extremely rare native iron deposits, it is the most magnetic of all the naturally occurring minerals on Earth. Naturally magnetized pieces of magnetite, called lodestone, will attract small pieces of iron, which is how ancient peoples first discovered the property of magnetism.
Magnetosomes are membranous structures present in magnetotactic bacteria (MTB). They contain iron-rich magnetic particles that are enclosed within a lipid bilayer membrane. Each magnetosome can often contain 15 to 20 magnetite crystals that form a chain which acts like a compass needle to orient magnetotactic bacteria in geomagnetic fields, thereby simplifying their search for their preferred microaerophilic environments. Recent research has shown that magnetosomes are invaginations of the inner membrane and not freestanding vesicles. Magnetite-bearing magnetosomes have also been found in eukaryotic magnetotactic algae, with each cell containing several thousand crystals.
Geobiology is a field of scientific research that explores the interactions between the physical Earth and the biosphere. It is a relatively young field, and its borders are fluid. There is considerable overlap with the fields of ecology, evolutionary biology, microbiology, paleontology, and particularly soil science and biogeochemistry. Geobiology applies the principles and methods of biology, geology, and soil science to the study of the ancient history of the co-evolution of life and Earth as well as the role of life in the modern world. Geobiologic studies tend to be focused on microorganisms, and on the role that life plays in altering the chemical and physical environment of the pedosphere, which exists at the intersection of the lithosphere, atmosphere, hydrosphere and/or cryosphere. It differs from biogeochemistry in that the focus is on processes and organisms over space and time rather than on global chemical cycles.
Magnetospirillum is a Gram-negative, microaerophilic genus of magnetotactic bacteria, first isolated from pond water by the microbiologist R. P. Blakemore in 1975. They have a spiral (helical) shape and are propelled by a polar flagellum at each end of their cells. Four species have been described: M. magnetotacticum strain MS-1 (originally classified as Aquaspirillum magnetotacticum; M. magneticum strain AMB-1; M. gryphiswaldense and M. bellicus.
Magnetotactic bacteria are a polyphyletic group of bacteria that orient themselves along the magnetic field lines of Earth's magnetic field. Discovered in 1963 by Salvatore Bellini and rediscovered in 1975 by Richard Blakemore, this alignment is believed to aid these organisms in reaching regions of optimal oxygen concentration. To perform this task, these bacteria have organelles called magnetosomes that contain magnetic crystals. The biological phenomenon of microorganisms tending to move in response to the environment's magnetic characteristics is known as magnetotaxis. However, this term is misleading in that every other application of the term taxis involves a stimulus-response mechanism. In contrast to the magnetoreception of animals, the bacteria contain fixed magnets that force the bacteria into alignment—even dead cells are dragged into alignment, just like a compass needle.
Biomining is the technique of extracting metals from ores and other solid materials typically using prokaryotes, fungi or plants. These organisms secrete different organic compounds that chelate metals from the environment and bring it back to the cell where they are typically used to coordinate electrons. It was discovered in the mid 1900s that microorganisms use metals in the cell. Some microbes can use stable metals such as iron, copper, zinc, and gold as well as unstable atoms such as uranium and thorium. Large chemostats of microbes can be grown to leach metals from their media. These vats of culture can then be transformed into many marketable metal compounds. Biomining is an environmentally friendly technique compared to typical mining. Mining releases many pollutants while the only chemicals released from biomining is any metabolites or gasses that the bacteria secrete. The same concept can be used for bioremediation models. Bacteria can be inoculated into environments contaminated with metals, oils, or other toxic compounds. The bacteria can clean the environment by absorbing these toxic compounds to create energy in the cell. Bacteria can mine for metals, clean oil spills, purify gold, and use radioactive elements for energy.
Mackinawite is an iron nickel sulfide mineral with the chemical formula (Fe,Ni)
1+xS. The mineral crystallizes in the tetragonal crystal system and has been described as a distorted, close packed, cubic array of S atoms with some of the gaps filled with Fe. Mackinawite occurs as opaque bronze to grey-white tabular crystals and anhedral masses. It has a Mohs hardness of 2.5 and a specific gravity of 4.17. It was first described in 1962 for an occurrence in the Mackinaw mine, Snohomish County, Washington for which it was named.
Magnetofossils are the fossil remains of magnetic particles produced by magnetotactic bacteria (magnetobacteria) and preserved in the geologic record. The oldest definitive magnetofossils formed of the mineral magnetite come from the Cretaceous chalk beds of southern England, while magnetofossil reports, not considered to be robust, extend on Earth to the 1.9-billion-year-old Gunflint Chert; they may include the four-billion-year-old Martian meteorite ALH84001.
Bacterial motility is the ability of bacteria to move independently using metabolic energy. Most motility mechanisms which evolved among bacteria also evolved in parallel among the archaea. Most rod-shaped bacteria can move using their own power, which allows colonization of new environments and discovery of new resources for survival. Bacterial movement depends not only on the characteristics of the medium, but also on the use of different appendages to propel. Swarming and swimming movements are both powered by rotating flagella. Whereas swarming is a multicellular 2D movement over a surface and requires the presence of surfactants, swimming is movement of individual cells in liquid environments.
Environmental magnetism is the study of magnetism as it relates to the effects of climate, sediment transport, pollution and other environmental influences on magnetic minerals. It makes use of techniques from rock magnetism and magnetic mineralogy. The magnetic properties of minerals are used as proxies for environmental change in applications such as paleoclimate, paleoceanography, studies of the provenance of sediments, pollution and archeology. The main advantages of using magnetic measurements are that magnetic minerals are almost ubiquitous and magnetic measurements are quick and non-invasive.
Iron(II,III) sulfide is a blue-black (sometimes pinkish) chemical compound of iron and sulfur with formula Fe3S4 or FeS·Fe2S3, which is much similar to iron(II,III) oxide. It occurs naturally as the sulfide mineral greigite and is magnetic. It is a bio-mineral produced by and found in magnetotactic bacteria. It is a mixed valence compound, featuring both Fe2+ and Fe3+ centers, in 1:2 ratio.
The class Zetaproteobacteria is the sixth and most recently described class of the Pseudomonadota. Zetaproteobacteria can also refer to the group of organisms assigned to this class. The Zetaproteobacteria were originally represented by a single described species, Mariprofundus ferrooxydans, which is an iron-oxidizing neutrophilic chemolithoautotroph originally isolated from Kamaʻehuakanaloa Seamount in 1996 (post-eruption). Molecular cloning techniques focusing on the small subunit ribosomal RNA gene have also been used to identify a more diverse majority of the Zetaproteobacteria that have as yet been unculturable.
Mariprofundus ferrooxydans is a neutrophilic, chemolithotrophic, Gram-negative bacterium which can grow by oxidising ferrous to ferric iron. It is one of the few members of the class Zetaproteobacteria in the phylum Pseudomonadota. It is typically found in iron-rich deep sea environments, particularly at hydrothermal vents. M. ferrooxydans characteristically produces stalks of solid iron oxyhydroxides that form into iron mats. Genes that have been proposed to catalyze Fe(II) oxidation in M. ferrooxydans are similar to those involved in known metal redox pathways, and thus it serves as a good candidate for a model iron oxidizing organism.
Aerotaxis is the movement caused by oxygen gradients. Positive aerotaxis involves the movement toward higher concentration of environmental oxygen, while negative aerotaxis involves the movement towards a lower concentration of environmental oxygen. Aerotactic bacteria gather around sources of air forming aerotactic bands.
Richard B. Frankel is an Emeritus Professor of Physics at the California State Polytechnic University, San Luis Obispo. He is noted for his research on magnetotaxis and biomineralization of magnetic iron minerals in general and magnetotactic bacteria in particular. His expertise in the latter was prominently discussed in Stephen Jay Gould's The Panda's Thumb. He is a graduate of the University of Missouri (1961) and took a PhD from Berkeley (1965). Much of his career was spent at the Francis Bitter National Magnet Laboratory, Massachusetts Institute of Technology before joining Cal Poly in 1988.
Desulfovibrio magneticus is a bacterium. It is sulfate-reducing and is notable for producing intracellular single-domain-sized magnetite particles, making it magnetotactic. Its type strain is RS-1T.
Magnetococcus marinus is a species of Alphaproteobacteria that has the peculiar ability to form a structure called a magnetosome, a membrane-encased, single-magnetic-domain mineral crystal formed by biomineralisation, which allows the cells to orient along the Earth’s geomagnetic field. The Magnetococcus marinus grows chemolithoautotrophically with thiosulfate and chemoorganoheterotrophically on acetate.
Tsuyoshi Tanaka, Ph.D., is a Japanese chemist, who is active in the fields of nanotechnology and environmental science; he is a professor of the Tokyo University of Agriculture and Technology (TUAT).
Marine prokaryotes are marine bacteria and marine archaea. They are defined by their habitat as prokaryotes that live in marine environments, that is, in the saltwater of seas or oceans or the brackish water of coastal estuaries. All cellular life forms can be divided into prokaryotes and eukaryotes. Eukaryotes are organisms whose cells have a nucleus enclosed within membranes, whereas prokaryotes are the organisms that do not have a nucleus enclosed within a membrane. The three-domain system of classifying life adds another division: the prokaryotes are divided into two domains of life, the microscopic bacteria and the microscopic archaea, while everything else, the eukaryotes, become the third domain.
Magnetobacterium bavaricum is a species of bacterium.