BTBD9

Last updated
BTBD9
Identifiers
Aliases BTBD9 , dJ322I12.1, BTB domain containing 9
External IDs OMIM: 611237 MGI: 1916625 HomoloGene: 14995 GeneCards: BTBD9
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001099272
NM_001172418
NM_052893
NM_152733

NM_027060
NM_172618

RefSeq (protein)

NP_001092742
NP_001165889
NP_443125
NP_689946

NP_081336
NP_766206

Location (UCSC) Chr 6: 38.17 – 38.64 Mb Chr 17: 30.43 – 30.8 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse
Chimera rendering of the BTBD9 gene. The green highlighted areas are the G nucleotides which indicate the areas which may be effected with disorders such as restless leg syndrome. BTBD9.png
Chimera rendering of the BTBD9 gene. The green highlighted areas are the G nucleotides which indicate the areas which may be effected with disorders such as restless leg syndrome.

BTB domain containing 9 is a protein that in humans is encoded by the BTBD9 gene.

Contents

BTBD9 is in a subgroup of BTB(POZ) proteins, which contribute to the forming of limbs and determination of cell fate in developing Drosophila melanogaster. [5] BTB(POZ) proteins also play a role in cellular functions such as: cytoskeleton regulation, transcription regulation, the gating and assembly of ion channels, and ubiquitination of proteins. BTBD9 is highly expressed throughout the brain and shows variable levels of expression in most other body tissues. [6] [7]

The gene is located on the short arm of chromosome 6 and the domain contains eight exons and seven introns. The chromosome 6 locational domain that codes for BTB(POZ) proteins is understood to contain genes encoding protein-protein interactions. [8] BTBD9 is a protein located in cellular cytosol and also expressed within Human embryonic kidney cell lineages. [9] There is also evidence suggesting that BTBD9 is highly expressed within the human nervous system from comparison analysis to Drosophila and human cell studies. [9]

Animal models

There are extensive homologs to BTBD9 which allow for the use of animal models in deciphering its functions and interactions. The BTBD9 homolog Btbd9 is extensively expressed in the central nervous system of adult mice including the thalamus, sub-thalamic nuclei, cerebral cortex, cerebellum, hippocampus, and caudate nucleus. [10] The Drosophila homolog dBTBD9, was shown to regulate dopamine levels in the Drosophila brain and iron regulation in human cell-lines. [9]

Synaptic plasticity

A recent study using Btbd9 knockout mice argued that BTBD9 is involved in synaptic plasticity, learning and memory, and protein alterations associated with vesicle recycling and endocytosis. [11]

Clinical relevance

There is some evidence that BTBD9 may be associated with Restless legs syndrome. [8] However, there is not a known mutation of the BTBD9 gene that is responsible for the onset of the RLS. [12] Mutations to BTBD9 are positively correlated with characteristic symptoms of Restless leg syndrome such as decreased dopamine levels, increased movement, and disrupted sleep patterns. [8] The overrepresentation of single nucleotide polymorphisms expressed in BTBD9 may be associated with Restless legs syndrome and nighttime leg movements. [8] Single nucleotide polymorphisms in BTBD9 that have been linked to Restless leg syndrome are also correlated with Tourette’s Syndrome that doesn’t present with Obsessive Compulsive Disorder. [13] One scientific review regarding Restless Legs Syndrome expressed that Restless Legs Syndrome is a complex syndrome that has many risk factor indicators including the presence of the BTBD9 gene. [14] Drosophila CG18126 gene loss was found to be correlated to sleep lost behavior within fruit fly experiments. [9] The BTBD9 gene through the use of iron regulatory protein-2 in human cell line is found to be associated with the regulation of iron levels in human cells. [9] One scientific review discussed how the iron level association found in human cell lines was also present in animal phenotypes. [14] These model organisms could have normal iron levels present throughout the body even when the dopamine neural pathways had below normal iron levels within the brain [14] due to the BTBD9 presence. One study was able to look at a single nucleotide polymorphism in BTBD9. This mutation can be contributed to these various health issues. [15] The BTBD9 gene has also been linked to blood anemia in a study. [16] The study linked a genetic marker in the BTBD9 gene with anemia in blood donors. It was found that higher ferritin levels could be connected to a variant in the allele (G) in the BTBD9 gene. The study was only conducted with Australian blood donors. The high ferritin levels indicated a contribution to the variant allel (G) while decreased ferritin levels indicate the BTBD9 gene is being over expressed. [16]

Related Research Articles

<span class="mw-page-title-main">Restless legs syndrome</span> Long-term disorder that causes a strong urge to move ones legs

Restless legs syndrome (RLS), also known as Willis–Ekbom disease (WED), is generally a long-term disorder that causes a strong urge to move one's legs. There is often an unpleasant feeling in the legs that improves somewhat by moving them. This is often described as aching, tingling, or crawling in nature. Occasionally, arms may also be affected. The feelings generally happen when at rest and therefore can make it hard to sleep. Due to the disturbance in sleep, people with RLS may be sleepy during the day, have low energy, and feel irritable or depressed. Additionally, many have limb twitching during sleep, a condition known as periodic limb movement disorder. RLS is not the same as habitual foot-tapping or leg-rocking.

<span class="mw-page-title-main">Ferritin</span> Iron-carrying protein

Ferritin is a universal intracellular protein that stores iron and releases it in a controlled fashion. The protein is produced by almost all living organisms, including archaea, bacteria, algae, higher plants, and animals. It is the primary intracellular iron-storage protein in both prokaryotes and eukaryotes, keeping iron in a soluble and non-toxic form. In humans, it acts as a buffer against iron deficiency and iron overload.

Periodic limb movement disorder (PLMD) is a sleep disorder where the patient moves limbs involuntarily and periodically during sleep, and has symptoms or problems related to the movement. PLMD should not be confused with restless legs syndrome (RLS), which is characterized by a voluntary response to an urge to move legs due to discomfort. PLMD on the other hand is involuntary, and the patient is often unaware of these movements altogether. Periodic limb movements (PLMs) occurring during daytime period can be found but are considered as a symptom of RLS; only PLMs during sleep can suggest a diagnosis of PLMD.

<span class="mw-page-title-main">Ferroportin</span> Protein

Ferroportin-1, also known as solute carrier family 40 member 1 (SLC40A1) or iron-regulated transporter 1 (IREG1), is a protein that in humans is encoded by the SLC40A1 gene. Ferroportin is a transmembrane protein that transports iron from the inside of a cell to the outside of the cell. Ferroportin is the only known iron exporter.

<span class="mw-page-title-main">CLOCK</span> Protein-coding gene in the species Homo sapiens

CLOCK is a gene encoding a basic helix-loop-helix-PAS transcription factor that is known to affect both the persistence and period of circadian rhythms.

Period (per) is a gene located on the X chromosome of Drosophila melanogaster. Oscillations in levels of both per transcript and its corresponding protein PER have a period of approximately 24 hours and together play a central role in the molecular mechanism of the Drosophila biological clock driving circadian rhythms in eclosion and locomotor activity. Mutations in the per gene can shorten (perS), lengthen (perL), and even abolish (per0) the period of the circadian rhythm.

<span class="mw-page-title-main">PER2</span> Protein-coding gene in the species Homo sapiens

PER2 is a protein in mammals encoded by the PER2 gene. PER2 is noted for its major role in circadian rhythms.

<span class="mw-page-title-main">Ferritin light chain</span> Protein-coding gene in the species Homo sapiens

Ferritin light chain is a protein that in humans is encoded by the FTL gene. Ferritin is the major protein responsible for storing intracellular iron in prokaryotes and eukaryotes. It is a heteropolymer consisting of 24 subunits, heavy and light ferritin chains. This gene has multiple pseudogenes.

<span class="mw-page-title-main">BACH1</span> Protein-coding gene in the species Homo sapiens

Transcription regulator protein BACH1 is a protein that in humans is encoded by the BACH1 gene.

<span class="mw-page-title-main">SIM2</span> Protein-coding gene in the species Homo sapiens

Single-minded homolog 2 is a protein that in humans is encoded by the SIM2 gene. It plays a major role in the development of the central nervous system midline as well as the construction of the face and head.

<span class="mw-page-title-main">ASCL1</span> Protein-coding gene in humans

Achaete-scute homolog 1 is a protein that in humans is encoded by the ASCL1 gene. Because it was discovered subsequent to studies on its homolog in Drosophila, the Achaete-scute complex, it was originally named MASH-1 for mammalian achaete scute homolog-1.

<span class="mw-page-title-main">BACH2</span> Protein-coding gene in the species Homo sapiens

Transcription regulator protein BACH2 is a protein that in humans is encoded by the BACH2 gene. It contains a BTB/POZ domain at its N-terminus which forms a disulphide-linked dimer and a bZip_Maf domain at the C-terminus.

<span class="mw-page-title-main">SIM1</span> Genetic protein

Single-minded homolog 1, also known as class E basic helix-loop-helix protein 14 (bHLHe14), is a protein that in humans is encoded by the SIM1 gene.

<span class="mw-page-title-main">ZBTB32</span> Protein-coding gene in the species Homo sapiens

Zinc finger and BTB domain-containing protein 32 is a protein that in humans is encoded by the 1960 bp ZBTB32 gene. The 52 kDa protein is a transcriptional repressor and the gene is expressed in T and B cells upon activation, but also significantly in testis cells. It is a member of the Poxviruses and Zinc-finger (POZ) and Krüppel (POK) family of proteins, and was identified in multiple screens involving either immune cell tumorigenesis or immune cell development.

<span class="mw-page-title-main">Kelch-like protein 12</span> Protein-coding gene in the species Homo sapiens

Kelch-like protein 12 is a protein that in humans is encoded by the KLHL12 gene.

<span class="mw-page-title-main">ZFP161</span> Protein-coding gene in the species Homo sapiens

Zinc finger protein 161 homolog is a protein that in humans is encoded by the ZBTB14 gene.

<span class="mw-page-title-main">TSHZ3</span> Protein-coding gene in the species Homo sapiens

Teashirt homolog 3 is a protein that in humans is encoded by the TSHZ3 gene. In mice, it is a necessary part of the neural circuitry that controls breathing. The gene is also a homolog of the Drosophila melanogaster teashirt gene, which encodes a zinc finger transcription factor important for development of the trunk.

<span class="mw-page-title-main">ABTB1</span> Protein-coding gene in the species Homo sapiens

Ankyrin repeat and BTB/POZ domain-containing protein 1 is a protein that in humans is encoded by the ABTB1 gene.

<span class="mw-page-title-main">Mitochondrial ferritin</span> Protein-coding gene in the species Homo sapiens

Mitochondrial ferritin is a ferroxidase enzyme that in humans is encoded by the FTMT gene.

<span class="mw-page-title-main">BTB/POZ domain</span>

The BTB/POZ domain is a structural domain found in proteins across the domain Eukarya. Given its prevalence in eukaryotes and its absence in Archaea and bacteria, it likely arose after the origin of eukaryotes. While primarily a protein-protein interaction domain, some BTB domains have additional functionality in transcriptional regulation, cytoskeletal mobility, protein ubiquitination and degradation, and ion channel formation and operation. BTB domains have traditionally been classified by the other structural features present in the protein.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000183826 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000062202 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Stogios PJ, Downs GS, Jauhal JJ, Nandra SK, Privé GG (15 September 2005). "Sequence and structural analysis of BTB domain proteins". Genome Biology. 6 (10): R82. doi: 10.1186/gb-2005-6-10-r82 . PMC   1257465 . PMID   16207353.
  6. "Gene: BTBD9 - ENSG00000183826". bgee.org. Retrieved 2020-04-14.
  7. "BTBD9 BTB domain containing 9 [Homo sapiens (human)] - Gene - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2021-11-13.
  8. 1 2 3 4 "BTBD9 gene". U.S. National Library of Medicine. November 26, 2019. Archived from the original on 2015-03-13. Retrieved December 2, 2019.
  9. 1 2 3 4 5 Freeman A, Pranski E, Miller RD, Radmard S, Bernhard D, Jinnah HA, et al. (June 2012). "Sleep fragmentation and motor restlessness in a Drosophila model of Restless Legs Syndrome". Current Biology. 22 (12): 1142–1148. doi:10.1016/j.cub.2012.04.027. PMC   3381864 . PMID   22658601.
  10. Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, Bernard A, et al. (January 2007). "Genome-wide atlas of gene expression in the adult mouse brain". Nature. 445 (7124): 168–176. Bibcode:2007Natur.445..168L. doi:10.1038/nature05453. PMID   17151600. S2CID   4421492.
  11. DeAndrade MP, Zhang L, Doroodchi A, Yokoi F, Cheetham CC, Chen HX, et al. (2012). Di Cunto F (ed.). "Enhanced hippocampal long-term potentiation and fear memory in Btbd9 mutant mice". PLOS ONE. 7 (4): e35518. Bibcode:2012PLoSO...735518D. doi: 10.1371/journal.pone.0035518 . PMC   3334925 . PMID   22536397.
  12. Zhang L, Fu YH (January 2020). "The molecular genetics of human sleep". The European Journal of Neuroscience. 51 (1): 422–428. doi:10.1111/ejn.14132. PMC   6389443 . PMID   30144347.
  13. Rivière JB, Xiong L, Levchenko A, St-Onge J, Gaspar C, Dion Y, et al. (October 2009). "Association of intronic variants of the BTBD9 gene with Tourette syndrome". Archives of Neurology. 66 (10): 1267–1272. doi: 10.1001/archneurol.2009.213 . PMID   19822783.
  14. 1 2 3 Allen RP, Donelson NC, Jones BC, Li Y, Manconi M, Rye DB, et al. (March 2017). "Animal models of RLS phenotypes". Sleep Medicine. Advances in Scientific Understanding of the Restless Legs Syndrome (RLS) (aka: Willis Ekbom Disease (WED)). 31: 23–28. doi:10.1016/j.sleep.2016.08.002. PMC   5349858 . PMID   27839945.
  15. Ji Y, Flower R, Hyland C, Saiepour N, Faddy H (February 2018). "Genetic factors associated with iron storage in Australian blood donors". Blood Transfusion = Trasfusione del Sangue. 16 (2): 123–129. doi:10.2450/2016.0138-16. PMC   5839608 . PMID   28151393.
  16. 1 2 DeAndrade MP, Johnson RL, Unger EL, Zhang L, van Groen T, Gamble KL, Li Y (September 2012). "Motor restlessness, sleep disturbances, thermal sensory alterations and elevated serum iron levels in Btbd9 mutant mice". Human Molecular Genetics. 21 (18): 3984–3992. doi:10.1093/hmg/dds221. PMC   3428151 . PMID   22678064.