C16orf82

Last updated
C16orf82
Identifiers
Aliases C16orf82 , TNT, chromosome 16 open reading frame 82
External IDs HomoloGene: 82387 GeneCards: C16orf82
Orthologs
SpeciesHumanMouse
Entrez

162083

n/a

Ensembl

ENSG00000234186

n/a

UniProt

Q7Z2V1

n/a

RefSeq (mRNA)

NM_182831
NM_001145545

n/a

RefSeq (protein)

NP_001139017

n/a

Location (UCSC) Chr 16: 27.07 – 27.07 Mb n/a
PubMed search [2] n/a
Wikidata
View/Edit Human

C16orf82 is a protein that, in humans, is encoded by the C16orf82 gene. [3] C16orf82 encodes a 2285 nucleotide mRNA transcript which is translated into a 154 amino acid protein using a non-AUG (CUG) start codon. The gene has been shown to be largely expressed in the testis, tibial nerve, and the pituitary gland, although expression has been seen throughout a majority of tissue types. [4] [5] [6] The function of C16orf82 is not fully understood by the scientific community. [7]

Contents

Gene

Locus

C16orf82 is located in humans at locus 16p12.1 on the positive strand.

General features

The gene encodes for a 2285 nucleotide mRNA transcript that is intronless. Human intronless genes represent a unique subset of the genome that are often involved in signaling, sperm formation, immune responses, or development. [8] C16orf82 being such a gene indicates it may play a role in one of these processes. Translation of C16orf82 initiates at a non-AUG (CUG) start codon. The presence of the non-canonical start codon suggests possible increased regulation of C16orf82 translation and/or possibly could allow for the translation of protein products that start with leucine instead of methionine as seen in proteins coded for by some genes present in the major histocompatibility complex. [9] [10]

DNA level regulation

Promoter

The C16orf82 promoter region has been predicted to contain a number of transcription factor binding sites including binding sites for transcription factors within the SOX family. [11] The presence of the SOX family transcription binding sites suggests that C16orf82 may play a role in sex determination. [12] Actual transcription factor functional studies show binding of the C16ORF82 promoter by ARNT, ELF5, SMAD4, and STAT3. [13]

Expression

C16orf82 expression in humans has been observed in major organ systems including the heart, liver, brain, and kidney at a constant level. [14] The tissue in which C16orf82 has been seen to be most highly expressed has been the testis, both by microarray experiments as well as RNA-seq. [4] [5] C16orf82 expression is also highly variable between individuals, with some expressing the gene in large amounts while others barely express the gene within the same tissue type. [6] [15] Micro RNA (miR-483) over expression has been shown to knock down C16orf82 expression. [16]

Protein

General features

The C16orf82 protein is 154 amino acids in length with an approximate molecular weight of 16.46 kDa with a predicted isoelectric point of 6.06. [17] There are no known variants or isoforms of C16orf82.

Domains

C16orf82 contains one domain, DUF4694, which currently has a function that is uncharacterized. The domain spans from amino acid 8 to amino acid 153. [18] DUF4694 contains a SSGY (serine-serine-glycine-tyrosine) sequence motif that is found in a majority of the protein's orthologs. [19] [20] There is no presence of a transmembrane domain thus the protein is not a transmembrane protein. [21]

Cellular localization

A conceptual diagram of C16orf82's structure. The flags represent sites of predicted phosphorylation and O-linked glycosylation. Grey flags represent phosphorylation sites and red flags represent sites of overlap between phosphorylation and O-linked glycosylation. C16orf82 Diagram With PTM.png
A conceptual diagram of C16orf82's structure. The flags represent sites of predicted phosphorylation and O-linked glycosylation. Grey flags represent phosphorylation sites and red flags represent sites of overlap between phosphorylation and O-linked glycosylation.

The localization of C16orf82 within a cell has been predicted to be nuclear. [21] A bipartite nuclear localization signal can be found starting at Arg107.

One of the predicted 3D models of the human C16orf82 protein. Predicted 3D Structure of human C16orf82 by I-TASSER software.png
One of the predicted 3D models of the human C16orf82 protein.

Post-translational modifications

The human C16orf82 protein has been predicted to be phosphorylated at a number of serine residues. [26] O-linked glycosylation has also been predicted to happen at a number of sites, including some that overlap with the aforementioned phosphorylation sites. [27] The sites of overlap between the two types of post-translational modifications could play important regulatory roles in the activity and lifespan of the human C16orf82 protein. [28]

Secondary structure

The secondary structure of the human C16orf82 protein has been predicted to be largely disordered by a number of modeling programs. [29] [30] [31] [32]

Evolution/homology

Paralogs

No paralogs of C16orf82 exist within humans. [20]

Orthologs

C16orf82 has over 100 predicted orthologs, which all reside in the class mammalia and more precisely the subclass eutheria. [33] [20] All of the orthologs contained the domain DUF4964. [33] The most distant ortholog detected was within the nine-banded armadillo (Dasypus novemcinctus) within the order Cingluata. Below is a table of 20 orthologs from various orders within the subclass eutheria with the sequence identity and time since divergence in relation to humans.

Genus and SpeciesCommon NameDate of divergence (Mya) [34] Accession number [35] Protein Sequence length [35] Sequence Identity (%)
Homo sapiens Human0 NP_001139017.1 154100
Gorilla gorilla gorilla Gorilla9.06 XP_004057433.1 21797
Saimiri boliviensis boliviensis Bolivian squirrel monkey43.2 XP_003945340.1 21781
Carlito syrichta Philippine tarsier67.1 XP_008059656.1 19454
Tupaia chinensis Chinese tree shrew82 XP_006148346.2 21154
Ochotona princeps American pika90 XP_004587173.1 18446
Oryctolagus cuniculus Rabbit90 XP_008256138.1 20749
Microtus ochrogaster Prairie Vole90 XP_005372535.1 18048
Fukomys damarensis Damara mole-rat90 XP_010621795.1 18847
Enhydra lutris kenyoni Northern Sea Otter96 XP_022382137.1 16846
Mustela putorius furo domestic ferret96 XP_012901961.1 17346
Canis lupus familiaris Dog96 NP_001139232.1 15850
Condylura cristata star-nosed mole96 XP_004696008.1 19940
Bos taurus Cattle96 NP_001139230.1 15656
Bison bison bison American Bison96 XP_010835728.1 19755
Capra hircus Goat96 XP_013830092.1 20154
Balaenoptera acutorostrata scammoniMinke Whale96 XP_007187042.1 20652
Equus Caballus Horse96N/A15347
Hipposideros armiger Great Roundleaf Bat96 XP_019505352.1 19263
Loxodonta africana African savanna elephant105 XP_023414770.1 18353
Dasypus novemcinctus nine-banded armadillo105 XP_012377635.1 23849

Rate of evolution

Graph of the adjusted protein sequence divergence of C16orf82, cytochrome C, and fibrinogen using species which contain C16orf82 orthologs. Evolution Graph of C16orf82 Fixed.png
Graph of the adjusted protein sequence divergence of C16orf82, cytochrome C, and fibrinogen using species which contain C16orf82 orthologs.

C16orf82's rate of evolution was determined to be relatively fast even in comparison to fibrinogen, a gene that has been shown to evolve quickly. [36]

Clinical significance

Behavioral disorders

C16orf82 has been associated with Schizophrenia through a genome-wide association study and autism based on copy number variation analysis. [37] [38] Currently, research has not shown if C16orf82 plays any direct role in either of these disorders.

Related Research Articles

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<span class="mw-page-title-main">PRR29</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">C19orf44</span> Mammalian protein found in Homo sapiens

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<span class="mw-page-title-main">CFAP299</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">C11orf98</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">C13orf42</span> C13orf42 gene page

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References

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