CDH23

Last updated
CDH23
Protein CDH23 PDB 2KBR.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases CDH23 , CDHR23, USH1D, cadherin-related 23, cadherin related 23, PITA5
External IDs OMIM: 605516 MGI: 1890219 HomoloGene: 11142 GeneCards: CDH23
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001252635
NM_023370

RefSeq (protein)

NP_001239564
NP_075859

Location (UCSC) Chr 10: 71.4 – 71.82 Mb Chr 10: 60.14 – 60.53 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Cadherin-23 is a protein that in humans is encoded by the CDH23 gene. [5] [6] [7]

Function

This gene is a member of the cadherin superfamily, genes encoding calcium dependent cell-cell adhesion glycoproteins. The protein encoded by this gene is a large, single-pass transmembrane protein composed of an extracellular domain containing 27 repeats that show significant homology to the cadherin ectodomain. Expressed in the neurosensory epithelium, the protein is thought to be involved in stereocilia organization and hair bundle formation. Specifically, it is thought to interact with protocadherin 15 to form tip-link filaments. [8]

Clinical significance

The gene is located in a region containing the human deafness loci DFNB12 and USH1D. Usher syndrome 1D and nonsyndromic autosomal recessive deafness DFNB12 are caused by allelic mutations of this novel cadherin-like gene. [7] [9] The gene is associated with kidney function decline. [10]

Interactions

CDH23 has been shown to interact with USH1C. [11] [12]

Related Research Articles

<span class="mw-page-title-main">Usher syndrome</span> Recessive genetic disorder causing deafblindness

Usher syndrome, also known as Hallgren syndrome, Usher–Hallgren syndrome, retinitis pigmentosa–dysacusis syndrome or dystrophia retinae dysacusis syndrome, is a rare genetic disorder caused by a mutation in any one of at least 11 genes resulting in a combination of hearing loss and visual impairment. It is a major cause of deafblindness and is at present incurable.

Pendrin is an anion exchange protein that in humans is encoded by the SLC26A4 gene . Pendrin was initially identified as a sodium-independent chloride-iodide exchanger with subsequent studies showing that it also accepts formate and bicarbonate as substrates. Pendrin is similar to the Band 3 transport protein found in red blood cells. Pendrin is the protein which is mutated in Pendred syndrome, which is an autosomal recessive disorder characterized by sensorineural hearing loss, goiter and a partial organification problem detectable by a positive perchlorate test.

<span class="mw-page-title-main">MYO7A</span> Protein-coding gene in the species Homo sapiens

Myosin VIIA is protein that in humans is encoded by the MYO7A gene. Myosin VIIA is a member of the unconventional myosin superfamily of proteins. Myosins are actin binding molecular motors that use the enzymatic conversion of ATP - ADP + inorganic phosphate (Pi) to provide the energy for movement.

<span class="mw-page-title-main">GJB2</span> Protein-coding gene in the species Homo sapiens

Gap junction beta-2 protein (GJB2), also known as connexin 26 (Cx26) — is a protein that in humans is encoded by the GJB2 gene.

<span class="mw-page-title-main">MT-RNR1</span> SSU rRNA of the mitochondrial ribosome

Mitochondrially encoded 12S ribosomal RNA, also known as Mitochondrial-derived peptide MOTS-c or Mitochondrial open reading frame of the 12S rRNA-c is the SSU rRNA of the mitochondrial ribosome. In humans, 12S is encoded by the MT-RNR1 gene and is 959 nucleotides long. MT-RNR1 is one of the 37 genes contained in animal mitochondria genomes. Their 2 rRNA, 22 tRNA and 13 mRNA genes are very useful in phylogenetic studies, in particular the 12S and 16S rRNAs. The 12S rRNA is the mitochondrial homologue of the prokaryotic 16S and eukaryotic nuclear 18S ribosomal RNAs. Mutations in the MT-RNR1 gene may be associated with hearing loss.

<span class="mw-page-title-main">USH2A</span> Protein-coding gene in the species Homo sapiens

Usherin is a protein that in humans is encoded by the USH2A gene.

<span class="mw-page-title-main">USH1C</span>

Harmonin is a protein that in humans is encoded by the USH1C gene. It is expressed in sensory cells of the inner ear and retina, where it plays a role in hearing, balance, and vision. Mutations at the USH1C locus cause Usher syndrome type 1c and nonsyndromic sensorineural deafness.

<span class="mw-page-title-main">PCDH15</span> Protein-coding gene in the species Homo sapiens

Protocadherin-15 is a protein that in humans is encoded by the PCDH15 gene.

<span class="mw-page-title-main">USH1G</span>

Usher syndrome type-1G protein is a protein that in humans is encoded by the USH1G gene.

<span class="mw-page-title-main">TMPRSS3</span> Protein-coding gene in the species Homo sapiens

Transmembrane protease, serine 3 is an enzyme that in humans is encoded by the TMPRSS3 gene.

<span class="mw-page-title-main">DFNB31</span> Protein-coding gene in the species Homo sapiens

Whirlin is a protein that in humans is encoded by the DFNB31 gene.

<span class="mw-page-title-main">TRIOBP</span> Protein-coding gene in the species Homo sapiens

TRIO and F-actin-binding protein is a protein that in humans is encoded by the TRIOBP gene.

<span class="mw-page-title-main">TECTA</span>

Alpha-tectorin is a protein that in humans is encoded by the TECTA gene.

<span class="mw-page-title-main">ECD (gene)</span> Protein-coding gene in the species Homo sapiens

Protein SGT1 is a protein that in humans is encoded by the ECD gene.

<span class="mw-page-title-main">Otoferlin</span>

Otoferlin is a protein that in humans is encoded by the OTOF gene.

<span class="mw-page-title-main">TMC1</span>

Transmembrane channel-like protein 1 is a protein that in humans is encoded by the TMC1 gene. TMC1 contains six transmembrane domains with both the C and N termini on the endoplasmic side of the membrane, as well as a large loop between domains 4 and 5. This topology is similar to that of transient receptor potential channels (TRPs), a family of proteins involved in the perception of senses such as temperature, taste, pressure, and vision. TMC1 has been located in the post-natal mouse cochlea, and knockouts for TMC1 and TMC2 result in both auditory and vestibular deficits indicating TMC1 is a molecular part of auditory transduction.

<span class="mw-page-title-main">MYO15A</span> Protein-coding gene in the species Homo sapiens

Myosin-XV is a protein that in humans is encoded by the MYO15A gene.

<span class="mw-page-title-main">LOXHD1</span>

Lipoxygenase homology domains 1 is a protein in humans that is encoded by the LOXHD1 gene.

<span class="mw-page-title-main">LRTOMT</span>

Leucine rich transmembrane and O-methyltransferase domain containing is a protein that in humans is encoded by the LRTOMT gene.

<span class="mw-page-title-main">Pejvakin</span>

Pejvakin is a protein that in humans is encoded by the PJVK gene.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000107736 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000012819 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Bolz H, von Brederlow B, Ramírez A, Bryda EC, Kutsche K, Nothwang HG, Seeliger M, del C-Salcedó Cabrera M, Vila MC, Molina OP, Gal A, Kubisch C (2001). "Mutation of CDH23, encoding a new member of the cadherin gene family, causes Usher syndrome type 1D". Nature Genetics. 27 (1): 108–12. doi:10.1038/83667. PMID   11138009. S2CID   30614281.
  6. Bork JM, Peters LM, Riazuddin S, Bernstein SL, Ahmed ZM, Ness SL, Polomeno R, Ramesh A, Schloss M, Srisailpathy CR, Wayne S, Bellman S, Desmukh D, Ahmed Z, Khan SN, Kaloustian VM, Li XC, Lalwani A, Riazuddin S, Bitner-Glindzicz M, Nance WE, Liu XZ, Wistow G, Smith RJ, Griffith AJ, Wilcox ER, Friedman TB, Morell RJ (2001). "Usher Syndrome 1D and Nonsyndromic Autosomal Recessive Deafness DFNB12 Are Caused by Allelic Mutations of the Novel Cadherin-Like Gene CDH23". The American Journal of Human Genetics. 68 (1): 26–37. doi:10.1086/316954. PMC   1234923 . PMID   11090341.
  7. 1 2 EntrezGene 64072
  8. Kazmierczak P, Sakaguchi H, Tokita J, Wilson-Kubalek EM, Milligan RA, Müller U, Kachar B (2007). "Cadherin 23 and protocadherin 15 interact to form tip-link filaments in sensory hair cells". Nature. 449 (7158): 87–91. Bibcode:2007Natur.449...87K. doi:10.1038/nature06091. PMID   17805295. S2CID   4414814.
  9. Woo HM, Park HJ, Park MH, Kim BY, Shin JW, Yoo WG, Koo SK (2014). "Identification of CDH23 mutations in Korean families with hearing loss by whole-exome sequencing". BMC Medical Genetics. 15 (1): 46. doi:10.1186/1471-2350-15-46. PMC   4036425 . PMID   24767429.
  10. Gorski M, Tin A, Garnaas M, et al. (2015). "Genome-wide association study of kidney function decline in individuals of European descent". Kidney Int. 87 (5): 1017–29. doi:10.1038/ki.2014.361. PMC   4425568 . PMID   25493955.
  11. Boëda B, El-Amraoui A, Bahloul A, Goodyear R, Daviet L, Blanchard S, Perfettini I, Fath KR, Shorte S, Reiners J, Houdusse A, Legrain P, Wolfrum U, Richardson G, Petit C (2002). "Myosin VIIa, harmonin and cadherin 23, three Usher I gene products that cooperate to shape the sensory hair cell bundle". The EMBO Journal. 21 (24): 6689–99. doi:10.1093/emboj/cdf689. PMC   139109 . PMID   12485990.
  12. Siemens J, Kazmierczak P, Reynolds A, Sticker M, Littlewood-Evans A, Müller U (2002). "The Usher syndrome proteins cadherin 23 and harmonin form a complex by means of PDZ-domain interactions". Proceedings of the National Academy of Sciences. 99 (23): 14946–51. Bibcode:2002PNAS...9914946S. doi: 10.1073/pnas.232579599 . PMC   137525 . PMID   12407180.

Further reading