Clavaviridae

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Clavavirus
ODD.Clava.Figure 1.v2-Claviviridae-APBV1 (a).png
Aeropyrum pernix bacilliform virus 1 (APBV1)
Virus classification OOjs UI icon edit-ltr.svg
(unranked): Virus
Family: Clavaviridae
Genus:Clavavirus
Species
  • Aeropyrum pernix bacilliform virus 1

Clavaviridae is a family of double-stranded viruses that infect archaea. This family was first described by the team led by D. Prangishvili in 2010. [1] There is one genus in this family (Clavavirus). Within this genus, a single species has been described to date: Aeropyrum pernix bacilliform virus 1 (APBV1). [2]

Contents

The name is derived from the Latin word clava meaning stick.[ citation needed ]

Virology

3D reconstruction of the virion structure of Aeropyrum pernix bacilliform virus 1 (APBV1). Scale bar 10 nm. ODD.Clava.Figure 1.v2-Claviviridae-APBV1 (bcd).png
3D reconstruction of the virion structure of Aeropyrum pernix bacilliform virus 1 (APBV1). Scale bar 10 nm.

The virons are bacilliform in shape and 143 nanometers (nm) in length and 15.8 nm in diameter. [1] [3] One end is pointed and the other is rounded. The structure of the APBV1 virion has been solved by cryo-electron microscopy to near-atomic resolution, revealing how the helical particle is built from an alpha-helical major capsid protein with a unique structural fold. [3] Virions are highly thermostable and remain infectious after incubation at 100 °C for 3 h[ citation needed ]

APBV1 genome map ODD.Clava.Figure 3.v4-Claviviridae-APBV1-genome.png
APBV1 genome map

The genome is a circular double-stranded DNA molecule of 5.3 kb. It does not integrate into the host genome. The genome contains 14 open reading frames, none of which share similarity with sequences in public databases.[ citation needed ]

Infection with this virus does not cause host cell lysis.[ citation needed ]

Related Research Articles

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<i>Lipothrixviridae</i> Family of viruses

Lipothrixviridae is a family of viruses in the order Ligamenvirales. Thermophilic archaea in the phylum Thermoproteota serve as natural hosts. There are 11 species in this family, assigned to 4 genera.

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<i>Globuloviridae</i> Family of viruses

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<span class="mw-page-title-main">Ampullaviridae</span> Family of viruses

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<span class="mw-page-title-main">Bicaudaviridae</span> Family of viruses

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<i>Sulfolobus turreted icosahedral virus 1</i> Species of virus

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<span class="mw-page-title-main">David Prangishvili</span>

David Prangishvili is a virologist, Professor at the Pasteur Institute of Paris, and foremost authority on viruses infecting Archaea.

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<span class="mw-page-title-main">Archaeal virus</span> Type of virus that infects the domain of unicellular, prokaryotic organisms or Archaea

An archaeal virus is a virus that infects and replicates in archaea, a domain of unicellular, prokaryotic organisms. Archaeal viruses, like their hosts, are found worldwide, including in extreme environments inhospitable to most life such as acidic hot springs, highly saline bodies of water, and at the bottom of the ocean. They have been also found in the human body. The first known archaeal virus was described in 1974 and since then, a large diversity of archaeal viruses have been discovered, many possessing unique characteristics not found in other viruses. Little is known about their biological processes, such as how they replicate, but they are believed to have many independent origins, some of which likely predate the last archaeal common ancestor (LACA).

<i>Adnaviria</i> Realm of viruses

Adnaviria is a realm of viruses that includes archaeal viruses that have a filamentous virion and a linear, double-stranded DNA genome. The genome exists in A-form (A-DNA) and encodes a dimeric major capsid protein (MCP) that contains the SIRV2 fold, a type of alpha-helix bundle containing four helices. The virion consists of the genome encased in capsid proteins to form a helical nucleoprotein complex. For some viruses, this helix is surrounded by a lipid membrane called an envelope. Some contain an additional protein layer between the nucleoprotein helix and the envelope. Complete virions are long and thin and may be flexible or a stiff like a rod.

References

  1. 1 2 Mochizuki T, Yoshida T, Tanaka R, Forterre P, Sako Y, Prangishvili D (2010). "Diversity of viruses of the hyperthermophilic archaeal genus Aeropyrum, and isolation of the Aeropyrum pernix bacilliform virus 1, APBV1, the first representative of the family Clavaviridae". Virology. 402 (2): 347–54. doi: 10.1016/j.virol.2010.03.046 . PMID   20430412.
  2. Prangishvili, David; Mochizuki, Tomohiro; Liu, Ying; Krupovic, Mart; ICTV Report Consortium (2019). "ICTV Virus Taxonomy Profile: Clavaviridae". Journal of General Virology. 100 (9): 1267–1268. doi: 10.1099/jgv.0.001295 . PMID   31271351.
  3. 1 2 Ptchelkine, D; Gillum, A; Mochizuki, T; Lucas-Staat, S; Liu, Y; Krupovic, M; Phillips, SEV; Prangishvili, D; Huiskonen, JT (10 November 2017). "Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging". Nature Communications. 8 (1): 1436. Bibcode:2017NatCo...8.1436P. doi:10.1038/s41467-017-01668-0. PMC   5681674 . PMID   29127347.