Cyclin K

Last updated
CCNK
Protein CCNK PDB 2i53.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases CCNK , CPR4, Cyclin K, IDDHDF
External IDs OMIM: 603544; MGI: 1276106; HomoloGene: 14748; GeneCards: CCNK; OMA:CCNK - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001099402
NM_003858

NM_009832

RefSeq (protein)

NP_001092872

NP_033962

Location (UCSC) Chr 14: 99.48 – 99.54 Mb Chr 12: 108.15 – 108.17 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Cyclin-K is a protein that in humans is encoded by the CCNK gene. [5] [6] [7]

Contents

Function

The protein encoded by this gene is a member of the transcription cyclin family. These cyclins may regulate transcription through their association with and activation of cyclin-dependent kinases (CDKs) through conformational changes. [8] [9] Activation of CDKs through their cyclin partner, creates kinase complexes that will activate target proteins through phosphorylation. Targeted proteins can then ultimately regulate decisions of a cell's progression within the cell cycle to occur. This gene product may be seen to play a dual role in both regulating CDK and RNA polymerase II (RNAP2) activities. [7] Cyclin K only uses RNA recruitment to activate transcription. [10]

Interactions

Cyclin K has been shown to interact with multiple CDKs including CDK9 and latest CDK12 and CDK13. [6] [9] Roles include helping to phosphorylate C-terminal domains of subunits of RNAP2. [11] Cyclin K is most noted for its associated induction of processive elongation. [8] Also, identified with G1 and S phase cyclin activity, however functions are not deeply understood. [5] [12]

Cyclin K also interacts with HIV nef protein. [13] In the presence of overexpressed Nef protein, Cyclin k and CDK9 binding is induced, inhibiting the positive elongation factor of other CDK9 binding complexes, resulting in an inhibition of specific HIV-1 gene expression. [9] [13] CDK 13 may also be characterized to interact with HIV mRNA splicing, alongside Nef, and the underexpression of Gag and Env related proteins. [12] [10]

Cyclin K is indispensable for Leukemia growth. SETD1A, is also known to bind Cyclin K through its FLOS domain. [14] The interaction is shown to be important to DNA damage response genes and for Leukemia proliferation. [10] [14]

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000090061 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000021258 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. 1 2 Edwards MC, Wong C, Elledge SJ (July 1998). "Human cyclin K, a novel RNA polymerase II-associated cyclin possessing both carboxy-terminal domain kinase and Cdk-activating kinase activity". Molecular and Cellular Biology. 18 (7): 4291–300. doi:10.1128/MCB.18.7.4291. PMC   109013 . PMID   9632813.
  6. 1 2 Fu TJ, Peng J, Lee G, Price DH, Flores O (December 1999). "Cyclin K functions as a CDK9 regulatory subunit and participates in RNA polymerase II transcription". The Journal of Biological Chemistry. 274 (49): 34527–30. doi: 10.1074/jbc.274.49.34527 . PMID   10574912.
  7. 1 2 "Entrez Gene: CCNK cyclin K".
  8. 1 2 Baek K, Brown RS, Birrane G, Ladias JA (February 2007). "Crystal structure of human cyclin K, a positive regulator of cyclin-dependent kinase 9". Journal of Molecular Biology. 366 (2): 563–73. doi:10.1016/j.jmb.2006.11.057. PMC   1852425 . PMID   17169370.
  9. 1 2 3 Greifenberg AK, Hönig D, Pilarova K, Düster R, Bartholomeeusen K, Bösken CA, Anand K, Blazek D, Geyer M (January 2016). "Structural and Functional Analysis of the Cdk13/Cyclin K Complex". Cell Reports. 14 (2): 320–31. doi: 10.1016/j.celrep.2015.12.025 . hdl: 11858/00-001M-0000-0029-567D-5 . PMID   26748711.
  10. 1 2 3 Kohoutek J, Blazek D (April 2012). "Cyclin K goes with Cdk12 and Cdk13". Cell Division. 7: 12. doi: 10.1186/1747-1028-7-12 . PMC   3348076 . PMID   22512864.
  11. Edwards MC, Wong C, Elledge SJ (July 1998). "Human cyclin K, a novel RNA polymerase II-associated cyclin possessing both carboxy-terminal domain kinase and Cdk-activating kinase activity". Molecular and Cellular Biology. 18 (7): 4291–300. doi:10.1128/mcb.18.7.4291. PMC   109013 . PMID   9632813.
  12. 1 2 Berro R, Pedati C, Kehn-Hall K, Wu W, Klase Z, Even Y, Genevière AM, Ammosova T, Nekhai S, Kashanchi F (July 2008). "CDK13, a new potential human immunodeficiency virus type 1 inhibitory factor regulating viral mRNA splicing". Journal of Virology. 82 (14): 7155–66. doi:10.1128/JVI.02543-07. PMC   2446983 . PMID   18480452.
  13. 1 2 Khan SZ, Mitra D (July 2011). "Cyclin K inhibits HIV-1 gene expression and replication by interfering with cyclin-dependent kinase 9 (CDK9)-cyclin T1 interaction in Nef-dependent manner". The Journal of Biological Chemistry. 286 (26): 22943–54. doi: 10.1074/jbc.M110.201194 . PMC   3123062 . PMID   21555514.
  14. 1 2 Hoshii T, Cifani P, Feng Z, Huang CH, Koche R, Chen CW, Delaney CD, Lowe SW, Kentsis A, Armstrong SA (February 2018). "A Non-catalytic Function of SETD1A Regulates Cyclin K and the DNA Damage Response". Cell. 172 (5): 1007–1021.e17. doi:10.1016/j.cell.2018.01.032. PMC   6052445 . PMID   29474905.

Further reading