Diane Barber

Last updated
Diane L. Barber
Diane Barber.jpg
Born
California, U.S.
EducationB.S., M.S., University of California, Davis
Ph.D., University of California, Los Angeles
SpouseA. Richard Ellis (1984-present)
Scientific career
FieldsCell Biology
Institutions University of California, San Francisco
Website dbarberlab.ucsf.edu

Diane L. Barber (born 1952) is an American cell biologist. She is an Endowed Professor and Chair of the Department of Cell and Tissue Biology at University of California, San Francisco (UCSF) and an elected American Association for the Advancement of Science fellow in recognition of her "distinguished contributions on cell signaling by plasma membrane ion transport proteins and on the design and function of proteins regulated by intracellular pH dynamics." [1] [2] In addition to teaching graduate and professional students and her administrative service, she directs a research laboratory funded by grants from the National Institutes of Health (NIH) and the National Science Foundation (NSF).

Contents

Early life and education

Barber was born and raised in Bakersfield, California. Her father, Leo Barber (Berberian), and mother, Helen Barber (nee Garabedian), were first-generation Armenian Americans whose families emigrated from the Anatolia region of Eastern Turkey; Karput and Diyarbakir, respectively. [3] She earned a BS in Biological Sciences in 1975 and MS in Physiology in 1977 from the University of California, Davis, followed by a PhD in Anatomy under Andrew Soll and John Walsh in 1985 in the Centre for Ulcer Research and Education at the University of California, Los Angeles. Supported by a National Research Service Award fellowship from the NIH, she completed her postdoctoral work under Susan Leeman in the Department of Physiology at the University of Massachusetts Medical Center in Worcester, MA. Her first faculty appointment was as an Assistant Professor at Yale University in the Department of Surgery, Section of Anatomy between 1987-1991. She joined the faculty in the Department of Stomatology and Surgery at the University of California, San Francisco in 1992. She is currently a Professor and former Chair of the Department of Cell and Tissue Biology at the University of California, San Francisco. [4]

Research

A major aspect of Barber's research is determining in molecular detail how intracellular pH (pHi) dynamics regulate cell behaviors, with a focus on epithelial plasticity, including transformed cancer cells, and stem cell differentiation. Barber addresses questions on how signaling networks [5] and the actin cytoskeleton [6] control normal and pathological cell behavior, particularly the post-translational modifications of proteins by protonation [7] and by phosphorylation. [8] Her research bridges protein structure and electrostatics with cell biology to reveal how pHi dynamics regulate cell behaviors though protonation of titrating amino acids as a post-translational modification to affect protein structure and function. Her group revealed design principles and functions of "pH sensors" described as endogenous proteins regulated within the cellular pH range, which they showed have critical roles in cell division, migration, and tumorigenesis. Additionally work from her group showed how increased pHi is necessary for adult and embryonic stem cell differentiation. Through their work, Barber's research group developed new genetically-encoded biosensors to quantitatively measure cytoplasmic and lysosome pH dynamics in clonal cells and animals. Collectively, Barber's work is highlighted by an h-index of 46 for her group's publications and her election as a fellow for the American Association for the Advancement of Science (AAAS), and being the plenary or keynote speaker at multiple international and national scientific conferences.

Cancer cell biology

One focus of her research is on cancer cell biology, specifically in regards to the pHi (intracellular pH) of cancer cells., which is increased in comparison to normal cells. The research focuses on the relationship between the increased pHi and their ability to perform necessary functions. The laboratory group showed in molecular detail how it is necessary for the directed cell migration for metastasis. This was accomplished through the use of selective pH sensors that defined how proteins were regulated by cellular changes in pH. The group subsequently worked on the effect of increased pHi on the glycolytic enzymes necessary for metabolic programming, somatic mutation biology, and tumorigenic behaviors. The research uses optogenetic tools to control the pHi of the cells, biosensors that are genetically encoded to quantify the pHi of single cancer cells as well as cells in vivo, and computational programming to identify ionizable residues in proteins and amino acid mutation signatures that are present in numerous cancer databases. [9] [10]

Stem cell differentiation

The second focus of Barber's laboratory is in stem cell differentiation, in collaboration with the laboratory of Todd Nystul. The group studies how intracellular pH and actin filament dynamics regulate stem cell differentiation. Through their work, the group has been able to show that daughter cells have a higher pHi than naive adult and embryonic stem cells that is necessary for their differentiation. Additionally, the laboratory studies how actin filament remodeling is necessary for the differentiation of naive embryonic stem cells. The current focus is on the transcriptional events linked to these actin dynamics. [9] [10]

Neurodegeneration

The final main focus of her research is on neurodegeneration, as part of a 4-lab collaboration with the groups of Aimee Kao, Matt Jacobson, and Torsten Wittman. The main focus of this area is to identify the dysregulated cellular pH dynamics that results in the pathology associated Alzheimer's disease. The laboratory is focused on reversing the decreased intracellular pH and increased lysosomal pH that is commonly associated with neurodegeneration. [9] [10] [11] This team recently received one of five Allen Distinguished Investigator (ADI) grants of $1.32 million. [12] [13]

Leadership and mentoring

Barber has been a long-standing member of the Women in Cell Biology (WICB) [6] committee within the American Society for Cell Biology (ASCB) and served as chair of the committee from 2016-2019. [14] She was also co-chair and chair of Gordon Research Conferences on Molecular Pharmacology, and currently serves on the Scientific Advisory Board of the Max Planck Institute for Experimental Medicine [7] as well as on editorial boards for several journals, including Molecular Biology of the Cell, the American Journal of Physiology – Cell Physiology, and BMC Biology. She has supervised more than 35 PhD students and postdoctoral fellows, and her mentoring and research excellence has been recognized by her receipt of the Annual Faculty Mentoring Award in 2013 from the UCSF Postdoctoral Scholars Association, of the Annual Faculty Research and Mentoring Award in 2020 from the UCSF John Greene Society of Dental Students, [15] and the Annual Faculty Lecture in Translational Science from the UCSF Academic Senate. [16] For the past several years, Barber has traveled to Yerevan, Armenia to co-teach a week-long cell biology course at the Institute of Molecular Biology. [17]

Personal life

Barber lives in Mill Valley, CA with her husband Richard Ellis, who is a criminal defense attorney specializing in capital habeas. They have two daughters, Claire Ellis Olson, an industry bioinformatics analyst in Seattle, WA, and Lauren Ellis, an attorney in the Los Angeles County Public Defender's Office, as well as two grandchildren. With her husband, she has been a coach for Special Olympics Swimming in Marin County for 16 years.

Selected publications

Research articles

Awards and memberships

From 1995 to 2000, Barber was named an Established Investigator by the American Heart Association. From 1998 and continuing into the present day, Barber has been on the editorial board of the American Journal of Physiology. Cell Physiology . From 1998 to 1999, Barber served on the National Review Committee for Transport and Metabolism of the American Heart Association. In 1998, Barber was awarded the Innovation in Basic Sciences Award at the University of California, San Francisco. From 2000 to 2002, Barber was the co-chair of the National Review Committee for Transport and Metabolism for the American Heart Association. In 2001, Barber became the vice-chair of the Gordon Conference on Molecular Pharmacology, and in 2003, she became the chair. Barber was a member of the NIH CDF3 Study Section from 2001 to 2003. In 2005, Barber received the Sandler Program Integrative Award. [18]

In 2012, Barber was selected as a fellow of the American Association for the Advancement of Science (AAAS). [19]

In 2016, Barber was appointed as the chair of Women in Cell Biology (WICB) for the American Society for Cell Biology (ASCB). [20] Her term began on January 1, 2016. She succeeded the last chair, Sandra K. Masur. [21]

Awards and honors

  1. Excellence in Research and Mentoring, John Greene Society of UCSF Dental Students (2021) [22]
  2. Faculty Lecture in Translational Science, UCSF Academic Senate (2022) [23]

Related Research Articles

<span class="mw-page-title-main">Microfilament</span> Filament in the cytoplasm of eukaryotic cells

Microfilaments, also called actin filaments, are protein filaments in the cytoplasm of eukaryotic cells that form part of the cytoskeleton. They are primarily composed of polymers of actin, but are modified by and interact with numerous other proteins in the cell. Microfilaments are usually about 7 nm in diameter and made up of two strands of actin. Microfilament functions include cytokinesis, amoeboid movement, cell motility, changes in cell shape, endocytosis and exocytosis, cell contractility, and mechanical stability. Microfilaments are flexible and relatively strong, resisting buckling by multi-piconewton compressive forces and filament fracture by nanonewton tensile forces. In inducing cell motility, one end of the actin filament elongates while the other end contracts, presumably by myosin II molecular motors. Additionally, they function as part of actomyosin-driven contractile molecular motors, wherein the thin filaments serve as tensile platforms for myosin's ATP-dependent pulling action in muscle contraction and pseudopod advancement. Microfilaments have a tough, flexible framework which helps the cell in movement.

<span class="mw-page-title-main">Wiskott–Aldrich syndrome protein</span> Mammalian protein found in humans

The Wiskott–Aldrich Syndrome protein (WASp) is a 502-amino acid protein expressed in cells of the hematopoietic system that in humans is encoded by the WAS gene. In the inactive state, WASp exists in an autoinhibited conformation with sequences near its C-terminus binding to a region near its N-terminus. Its activation is dependent upon CDC42 and PIP2 acting to disrupt this interaction, causing the WASp protein to 'open'. This exposes a domain near the WASp C-terminus that binds to and activates the Arp2/3 complex. Activated Arp2/3 nucleates new F-actin.

<span class="mw-page-title-main">Podosome</span>

Podosomes are conical, actin-rich structures found on the outer surface of the plasma membrane of animal cells. Their size ranges from approximately 0.5 µm to 2.0 µm in diameter. While usually situated on the periphery of the cellular membrane, these unique structures display a polarized pattern of distribution in migrating cells, situating at the front border between the lamellipodium and lamellum. Their primary purpose is connected to cellular motility and invasion; therefore, they serve as both sites of attachment and degradation along the extracellular matrix. Many different specialized cells exhibit these dynamic structures such as invasive cancer cells, osteoclasts, vascular smooth muscle cells, endothelial cells, and certain immune cells like macrophages and dendritic cells.

<span class="mw-page-title-main">ADF/Cofilin family</span> Family of actin-binding proteins

ADF/cofilin is a family of actin-binding proteins associated with the rapid depolymerization of actin microfilaments that give actin its characteristic dynamic instability. This dynamic instability is central to actin's role in muscle contraction, cell motility and transcription regulation.

<span class="mw-page-title-main">Cortactin</span> Protein found in humans

Cortactin is a monomeric protein located in the cytoplasm of cells that can be activated by external stimuli to promote polymerization and rearrangement of the actin cytoskeleton, especially the actin cortex around the cellular periphery. It is present in all cell types. When activated, it will recruit Arp2/3 complex proteins to existing actin microfilaments, facilitating and stabilizing nucleation sites for actin branching. Cortactin is important in promoting lamellipodia formation, invadopodia formation, cell migration, and endocytosis.

Marilyn Gist Farquhar was a pathologist and cellular biologist, Professor of Cellular and Molecular Medicine and Pathology, as well as the chair of the Department of Cellular and Molecular Medicine at the University of California, San Diego School of Medicine, who previously worked at Yale University from 1973 to 1990. She has won the E. B. Wilson Medal and the FASEB Excellence in Science Award. She was married to Nobel Laureate George Emil Palade from 1970 to his death in 2008. Her research focuses on control of intracellular membrane traffic and the molecular pathogenesis of auto immune kidney diseases. She has yielded a number of discoveries in basic biomedical research including: mechanisms of kidney disease, organization of functions that attach cells to one another, and mechanisms of secretions.

<span class="mw-page-title-main">Fascin</span> Actin bundling protein

Fascin is an actin bundling protein.

α-Catenin Primary protein link between cadherins and the actin cytoskeleton

α-Catenin (alpha-catenin) functions as the primary protein link between cadherins and the actin cytoskeleton. It has been reported that the actin binding proteins vinculin and α-actinin can bind to alpha-catenin. It has been suggested that alpha-catenin does not bind with high affinity to both actin filaments and the E-cadherin-beta-catenin complex at the same time. It has been observed that when α-catenin is not in a molecular complex with β-catenin, it dimerizes and functions to regulate actin filament assembly, possibly by competing with Arp2/3 protein. α-Catenin exhibits significant protein dynamics. However, a protein complex including a cadherin, actin, β-catenin and α-catenin has not been isolated.

The Rho family of GTPases is a family of small signaling G proteins, and is a subfamily of the Ras superfamily. The members of the Rho GTPase family have been shown to regulate many aspects of intracellular actin dynamics, and are found in all eukaryotic kingdoms, including yeasts and some plants. Three members of the family have been studied in detail: Cdc42, Rac1, and RhoA. All G proteins are "molecular switches", and Rho proteins play a role in organelle development, cytoskeletal dynamics, cell movement, and other common cellular functions.

<span class="mw-page-title-main">ACTR2</span> Mammalian protein found in Homo sapiens

Actin-related protein 2 is a protein that in humans is encoded by the ACTR2 gene.

<span class="mw-page-title-main">WASF2</span> Mammalian protein found in Homo sapiens

Wiskott–Aldrich syndrome protein family member 2 is a protein that in humans is encoded by the WASF2 gene.

<span class="mw-page-title-main">WASL (gene)</span> Mammalian protein found in Homo sapiens

Neural Wiskott–Aldrich syndrome protein is a protein that in humans is encoded by the WASL gene.

<span class="mw-page-title-main">CLIC4</span> Protein-coding gene in the species Homo sapiens

Chloride intracellular channel 4, also known as CLIC4,p644H1,HuH1, is a eukaryotic gene.

<span class="mw-page-title-main">ARPC2</span> Mammalian protein found in Homo sapiens

Actin-related protein 2/3 complex subunit 2 is a protein that in humans is encoded by the ARPC2 gene.

<span class="mw-page-title-main">Actin assembly-inducing protein</span>

The Actin assembly-inducing protein (ActA) is a protein encoded and used by Listeria monocytogenes to propel itself through a mammalian host cell. ActA is a bacterial surface protein comprising a membrane-spanning region. In a mammalian cell the bacterial ActA interacts with the Arp2/3 complex and actin monomers to induce actin polymerization on the bacterial surface generating an actin comet tail. The gene encoding ActA is named actA or prtB.

<span class="mw-page-title-main">Arp2/3 complex</span> Macromolecular complex

Arp2/3 complex is a seven-subunit protein complex that plays a major role in the regulation of the actin cytoskeleton. It is a major component of the actin cytoskeleton and is found in most actin cytoskeleton-containing eukaryotic cells. Two of its subunits, the Actin-Related Proteins ARP2 and ARP3, closely resemble the structure of monomeric actin and serve as nucleation sites for new actin filaments. The complex binds to the sides of existing ("mother") filaments and initiates growth of a new ("daughter") filament at a distinctive 70 degree angle from the mother. Branched actin networks are created as a result of this nucleation of new filaments. The regulation of rearrangements of the actin cytoskeleton is important for processes like cell locomotion, phagocytosis, and intracellular motility of lipid vesicles.

An actin nucleation core is a protein trimer with three actin monomers. It is called a nucleation core because it leads to the energetically favorable elongation reaction once a tetramer is formed from a trimer. Actin protein dimers and trimers are energetically unfavorable. Actin nucleators like the Arp2/3 complex of proteins from the formin family are most frequently involved in this process. Actin nucleation factors start the polymerization of actin within cells.

<span class="mw-page-title-main">Rong Li</span> American cell biologist (born 1967)

Rong Li is the Director of Mechanobiology Institute, a Singapore Research Center of Excellence, at the National University of Singapore. She is a Distinguished Professor at the National University of Singapore's Department of Biological Sciences and Bloomberg Distinguished Professor of Cell Biology and Chemical & Biomolecular Engineering at the Johns Hopkins School of Medicine and Whiting School of Engineering. She previously served as Director of Center for Cell Dynamics in the Johns Hopkins School of Medicine’s Institute for Basic Biomedical Sciences. She is a leader in understanding cellular asymmetry, division and evolution, and specifically, in how eukaryotic cells establish their distinct morphology and organization in order to carry out their specialized functions.

<span class="mw-page-title-main">Elaine Bearer</span> American neurobiologist and pathologist

Elaine L. Bearer is an American neuroscientist, pathologist, and composer.

<span class="mw-page-title-main">David G. Drubin</span> American biologist, academic, and researcher

David G. Drubin is an American biologist, academic, and researcher. He is a Distinguished Professor of Cell and Developmental Biology at the University of California, Berkeley where he holds the Ernette Comby Chair in Microbiology.

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