Erwiniaceae

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Erwiniaceae
Pantoea piersonii, formerly Kalamiella piersonii NRRL B-65522 (Type Strain).jpg
Pantoea piersonii , formerly Kalamiella piersonii on agar plate
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Pseudomonadota
Class: Gammaproteobacteria
Order: Enterobacterales
Family: Erwiniaceae
Adeolu et al., 2016
Genera

The Erwiniaceae are a family of Gram-negative bacteria which includes a number of plant pathogens and insect endosymbionts. [1] This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota. The type genus of this family is Erwinia. [2]

Contents

The name Erwiniaceae is derived from the Latin term Erwinia, referring the type genus of the family and the suffix "-aceae", an ending used to denote a family. Together, Erwiniaceae refers to a family whose nomenclatural type is the genus Erwinia. [1]

Biochemical characteristics and molecular signatures

Source: [1]

These bacteria are catalase-positive, oxidase-negative, and do not produce indole or hydrogen disulfide. Most species are positive for Voges-Proskauer test, with the exception of Erwinia toletana, Erwinia ypographi and some strains of Erwinia oleae.

12 conserved signature indels (CSIs) were identified through genomic analyses as exclusive for this family in the proteins glutamate–cysteine ligase, DNA gyrase (subunit B), LPS assembly protein LptD, thiol:disulfide interchange protein DsbA precursor, two-component sensor histidine kinase, RNA helicase, tRNA pseudouridine(13) synthase TruD, glycine/betaine ABC transporter ATP-binding protein, superoxide dismutase, and stationary phase inducible protein CsiE. [1] These CSIs provide a reliable molecular method of identification and differentiation of Erwiniaceae species from other families in the order Enterobacterales and other bacteria.

Historical systematics and current taxonomy

Erwiniaceae, as of 2021, contains eight validly published genera. [2] Members of this family were originally members of the family Enterobacteriaceae , a large phylogenetically unrelated group of species with distinct biochemical characteristics and different ecological niches. The original assignment of species into the family Enterobacteriaceae was largely based on 16S rRNA genome sequence analyses, which is known to have low discriminatory power and the results of which changes depends on the algorithm and organism information used. Despite this, the analyses still exhibited polyphyletic branching, indicating the presence of distinct subgroups within the family. [3]

In 2016, Adeolu et al. proposed the division of Enterobacteriaceae into 7 novel families based on comparative genomic analyses and the branching pattern of various phylogenetic trees constructed from conserved genome sequences, 16S rRNA sequences and multilocus sequence analyses. Molecular markers, specifically conserved signature indels, specific to this family were also identified as evidence supporting the division independent of phylogenetic trees. [1]

Related Research Articles

<span class="mw-page-title-main">Enterobacteriaceae</span> Family of bacteria

Enterobacteriaceae is a large family of Gram-negative bacteria. It includes over 30 genera and more than 100 species. Its classification above the level of family is still a subject of debate, but one classification places it in the order Enterobacterales of the class Gammaproteobacteria in the phylum Pseudomonadota. In 2016, the description and members of this family were emended based on comparative genomic analyses by Adeolu et al.

The Aquificota phylum is a diverse collection of bacteria that live in harsh environmental settings. The name Aquificota was given to this phylum based on an early genus identified within this group, Aquifex, which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea.

<span class="mw-page-title-main">Chlamydiota</span> Phylum of bacteria

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<span class="mw-page-title-main">Enterobacterales</span> Order of gram-negative bacteria

Enterobacterales is an order of Gram-negative, non-spore forming, facultatively anaerobic, rod-shaped bacteria with the class Gammaproteobacteria. The type genus of this order is Enterobacter.

<span class="mw-page-title-main">Pasteurellaceae</span> Family of bacteria

The Pasteurellaceae comprise a large family of Gram-negative bacteria. Most members live as commensals on mucosal surfaces of birds and mammals, especially in the upper respiratory tract. Pasteurellaceae are typically rod-shaped, and are a notable group of facultative anaerobes. Their biochemical characteristics can be distinguished from the related Enterobacteriaceae by the presence of oxidase, and from most other similar bacteria by the absence of flagella.

The Thermotogota are a phylum of the domain Bacteria. The phylum Thermotogota is composed of Gram-negative staining, anaerobic, and mostly thermophilic and hyperthermophilic bacteria.

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<span class="mw-page-title-main">Yersiniaceae</span> Family of bacteria

The Yersiniaceae are a family of Gram-negative bacteria that includes some familiar pathogens. For example, the type genus Yersinia includes Yersinia pestis, the causative agent of plague. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota.

Mangrovibacter is a genus in the order Enterobacterales. Members of the genus are Gram-stain-negative, facultatively anaerobic, nitrogen-fixing, and rod shaped. The name Mangrovibacter derives from:
Neo-Latin noun mangrovum, mangrove; Neo-Latin masculine gender noun, a rod; bacter, nominally meaning "a rod", but in effect meaning a bacterium, rod; Neo-Latin masculine gender noun Mangrovibacter, mangrove rod.

The Pectobacteriaceae are a family of Gram-negative bacteria which largely consist of plant pathogens. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota. The type species of this family is Pectobacterium.

The Hafniaceae are a family of Gram-negative bacteria. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota. Genera in this family include the type genus Hafnia, along with Edwardsiella and Obesumbacterium.

<span class="mw-page-title-main">Morganellaceae</span> Family of bacteria

The Morganellaceae are a family of Gram-negative bacteria that include some important human pathogens formerly classified as Enterobacteriaceae. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota. Genera in this family include the type genus Morganella, along with Arsenophonus, Cosenzaea, Moellerella, Photorhabdus, Proteus, Providencia and Xenorhabdus.

The Budviciaceae are a family of Gram-negative bacteria. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota. The type genus of this family is Budvicia.

Neobacillus is a genus of rod-shaped bacteria that show Gram-positive or Gram-variable staining. This genus belongs under the family Bacillaceae within the order Bacillales. The type species of Neobacillus is Neobacillus niacini.

<span class="mw-page-title-main">Cytobacillus</span>

Cytobacillus is a genus of rod-shaped bacteria that stain either Gram-positive or Gram-variable in the family Bacillaceae within the order Bacillales. The type species for this genus is Cytobacillus firmus.

Niallia is a genus of Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Niallia circulans.

Alkalicoccus is a genus of Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Alkalicoccus saliphilus.

The Eggerthellaceae are a family of Gram-positive, rod- or coccus-shaped Actinomycetota. It is the sole family within the order Eggerthellales.

Natrialbales is an order of halophilic, chemoorganotrophic archaea within the class Haloarchaea. The type genus of this order is Natrialba.

Haloferacales is an order of halophilic, chemoorganotrophic or heterotrophic archaea within the class Haloarchaea. The type genus of this order is Haloferax.

References

  1. 1 2 3 4 5 Adeolu, M; Alnajar, S; Naushad, S; S Gupta, R (December 2016). "Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov". International Journal of Systematic and Evolutionary Microbiology . 66 (12): 5575–5599. doi: 10.1099/ijsem.0.001485 . PMID   27620848.
  2. 1 2 "Family: Erwiniaceae". lpsn.dsmz.de. Retrieved 2021-06-05.
  3. Francino, M. Pilar; Santos, Scott R.; Ochman, Howard (2006), "Phylogenetic Relationships of Bacteria with Special Reference to Endosymbionts and Enteric Species", The Prokaryotes, New York, NY: Springer New York, pp. 41–59, doi:10.1007/0-387-30746-x_2, ISBN   978-0-387-25496-8 , retrieved 2021-06-02