Exosome component 5

EXOSC5
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2NN6
Identifiers
Aliases	EXOSC5 , RRP41B, RRP46, Rrp46p, hRrp46p, p12B, Exosome component 5, CABAC
External IDs	OMIM: 606492; MGI: 107889; HomoloGene: 5981; GeneCards: EXOSC5; OMA:EXOSC5 - orthologs
Gene location (Human) Chr. Chromosome 19 (human) [1] Band 19q13.2 Start 41,386,371 bp [1] End 41,397,362 bp [1]
Gene location (Mouse) Chr. Chromosome 7 (mouse) [2] Band 7 A3|7 13.96 cM Start 25,358,589 bp [2] End 25,370,793 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in monocyte gastrocnemius muscle muscle of thigh body of pancreas gonad prefrontal cortex C1 segment right adrenal gland skin of abdomen skin of leg Top expressed in seminiferous tubule spermatid spermatocyte embryo yolk sac embryo morula morula epiblast right kidney More reference expression data BioGPS More reference expression data
Gene ontology Molecular function 3'-5'-exoribonuclease activity exoribonuclease activity protein binding RNA binding Cellular component cytoplasm cytosol exosome (RNase complex) nuclear exosome (RNase complex) cytoplasmic exosome (RNase complex) nucleolus nucleus nucleoplasm Biological process regulation of mRNA stability nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' rRNA 3'-end processing rRNA catabolic process DNA deamination nuclear mRNA surveillance defense response to virus exonucleolytic catabolism of deadenylated mRNA U4 snRNA 3'-end processing polyadenylation-dependent snoRNA 3'-end processing RNA catabolic process rRNA processing RNA phosphodiester bond hydrolysis, exonucleolytic Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 56915 27998 Ensembl ENSG00000077348 ENSMUSG00000061286 UniProt Q9NQT4 Q9CRA8 RefSeq (mRNA) NM_020158 NM_138586 RefSeq (protein) NP_064543 NP_613052 Location (UCSC) Chr 19: 41.39 – 41.4 Mb Chr 7: 25.36 – 25.37 Mb PubMed search [3] [4]
Wikidata
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Exosome component 5, also known as EXOSC5, is a human gene, which is part of the exosome complex. ^[5]

Biallelic pathogenic variation in EXOSC5 causes autosomal recessive cerebellar ataxia, brain abnormalities, and cardiac conduction defects (CABAC, MIM 619576). ^{[6] [7] [8] [9]} Individuals with CABAC often have delayed developmental milestones, intellectual disability, cerebellar ataxia, hypotonia, dysarthria, and dysmorphic facies. Cardiac abnormalities including conduction defects, right bundle branch block, sinus node dysfunction, intraventricular conduction delay, atrioventricular block, and/or ventricular tachycardia. Cardiac pacemakers and defibrillators have been needed, and sudden cardiac death has been reported. ^{[6] [7] [8] [9]}

Interactions

Exosome component 5 has been shown to interact with:

• Exosome component 1, ^{[10] [11]} and
• Exosome component 8. ^[10]

References

1. GRCh38: Ensembl release 89: ENSG00000077348 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000061286 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: EXOSC5 exosome component 5".
6. "Entry - #619576 - CEREBELLAR ATAXIA, BRAIN ABNORMALITIES, AND CARDIAC CONDUCTION DEFECTS; CABAC - OMIM". omim.org. Retrieved 2023-01-23.
7. Beheshtian M, Fattahi Z, Fadaee M, Vazehan R, Jamali P, Parsimehr E, et al. (June 2019). "Identification of disease-causing variants in the EXOSC gene family underlying autosomal recessive intellectual disability in Iranian families". Clinical Genetics. 95 (6): 718–725. doi:10.1111/cge.13549. PMID   30950035. S2CID   96434991.
8. Calame DG, Herman I, Fatih JM, Du H, Akay G, Jhangiani SN, et al. (August 2021). "Risk of sudden cardiac death in EXOSC5-related disease". American Journal of Medical Genetics. Part A. 185 (8): 2532–2540. doi:10.1002/ajmg.a.62352. PMC   8382094 . PMID   34089229.
9. Slavotinek A, Misceo D, Htun S, Mathisen L, Frengen E, Foreman M, et al. (August 2020). "Biallelic variants in the RNA exosome gene EXOSC5 are associated with developmental delays, short stature, cerebellar hypoplasia and motor weakness". Human Molecular Genetics. 29 (13): 2218–2239. doi:10.1093/hmg/ddaa108. PMC   7399534 . PMID   32504085.
10. Raijmakers R, Egberts WV, van Venrooij WJ, Pruijn GJ (November 2002). "Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring". Journal of Molecular Biology. 323 (4): 653–663. doi:10.1016/s0022-2836(02)00947-6. hdl: 2066/186665 . PMID   12419256.
11. Raijmakers R, Noordman YE, van Venrooij WJ, Pruijn GJ (January 2002). "Protein-protein interactions of hCsl4p with other human exosome subunits". Journal of Molecular Biology. 315 (4): 809–818. doi:10.1006/jmbi.2001.5265. hdl: 2066/261980 . PMID   11812149.

Further reading

• Bonaldo MF, Lennon G, Soares MB (September 1996). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Research. 6 (9): 791–806. doi: 10.1101/gr.6.9.791 . PMID   8889548.
• Allmang C, Petfalski E, Podtelejnikov A, Mann M, Tollervey D, Mitchell P (August 1999). "The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases". Genes & Development. 13 (16): 2148–2158. doi:10.1101/gad.13.16.2148. PMC   316947 . PMID   10465791.
• Brouwer R, Allmang C, Raijmakers R, van Aarssen Y, Egberts WV, Petfalski E, et al. (March 2001). "Three novel components of the human exosome". The Journal of Biological Chemistry. 276 (9): 6177–6184. doi: 10.1074/jbc.M007603200 . hdl: 2066/186951 . PMID   11110791.
• Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R, Pruijn GJ, et al. (November 2001). "AU binding proteins recruit the exosome to degrade ARE-containing mRNAs". Cell. 107 (4): 451–464. doi: 10.1016/S0092-8674(01)00578-5 . PMID   11719186. S2CID   14817671.
• Raijmakers R, Noordman YE, van Venrooij WJ, Pruijn GJ (January 2002). "Protein-protein interactions of hCsl4p with other human exosome subunits". Journal of Molecular Biology. 315 (4): 809–818. doi:10.1006/jmbi.2001.5265. hdl: 2066/261980 . PMID   11812149.
• Brouwer R, Vree Egberts WT, Hengstman GJ, Raijmakers R, van Engelen BG, Seelig HP, et al. (2002). "Autoantibodies directed to novel components of the PM/Scl complex, the human exosome". Arthritis Research. 4 (2) 134: 134–138. doi: 10.1186/ar389 . PMC   83843 . PMID   11879549.
• Yang XF, Wu CJ, Chen L, Alyea EP, Canning C, Kantoff P, et al. (October 2002). "CML28 is a broadly immunogenic antigen, which is overexpressed in tumor cells". Cancer Research. 62 (19): 5517–5522. PMC   4762257 . PMID   12359762.
• Raijmakers R, Egberts WV, van Venrooij WJ, Pruijn GJ (November 2002). "Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring". Journal of Molecular Biology. 323 (4): 653–663. doi:10.1016/S0022-2836(02)00947-6. hdl: 2066/186665 . PMID   12419256.
• Lehner B, Sanderson CM (July 2004). "A protein interaction framework for human mRNA degradation". Genome Research. 14 (7): 1315–1323. doi:10.1101/gr.2122004. PMC   442147 . PMID   15231747.
• Andersen JS, Lam YW, Leung AK, Ong SE, Lyon CE, Lamond AI, Mann M (January 2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID   15635413. S2CID   4344740.
• Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, et al. (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–1178. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.
• Zhou H, Zhang D, Wang Y, Dai M, Zhang L, Liu W, et al. (August 2006). "Induction of CML28-specific cytotoxic T cell responses using co-transfected dendritic cells with CML28 DNA vaccine and SOCS1 small interfering RNA expression vector". Biochemical and Biophysical Research Communications. 347 (1): 200–207. Bibcode:2006BBRC..347..200Z. doi:10.1016/j.bbrc.2006.06.093. PMID   16815301.
• Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (November 2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–648. doi: 10.1016/j.cell.2006.09.026 . PMID   17081983. S2CID   7827573.