Exosome component 5

EXOSC5
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	2NN6
Identifiers
Aliases	EXOSC5 , RRP41B, RRP46, Rrp46p, hRrp46p, p12B, Exosome component 5, CABAC
External IDs	OMIM: 606492 MGI: 107889 HomoloGene: 5981 GeneCards: EXOSC5
Gene location (Human)
Chr.	Chromosome 19 (human)
End	41,397,362 bp
Gene location (Mouse)
Chr.	Chromosome 7 (mouse)
End	25,370,793 bp
RNA expression pattern
	Top expressed in
	monocyte; ; gastrocnemius muscle; ; body of pancreas; ; prefrontal cortex; ; right adrenal gland; ; skin of abdomen; ; left adrenal gland; ; right lobe of liver; ; nucleus accumbens; ; Brodmann area 9;
	Top expressed in
	seminiferous tubule; ; spermatid; ; spermatocyte; ; yolk sac; ; morula; ; lip; ; submandibular gland; ; thymus; ; lacrimal gland; ; proximal tubule;
	More reference expression data
	More reference expression data
Gene ontology
Molecular function	3'-5'-exoribonuclease activity ; exoribonuclease activity ; protein binding ; RNA binding ;
Cellular component	cytoplasm ; cytosol ; exosome (RNase complex) ; nuclear exosome (RNase complex) ; cytoplasmic exosome (RNase complex) ; nucleolus ; nucleus ; nucleoplasm ;
Biological process	regulation of mRNA stability ; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' ; rRNA 3'-end processing ; rRNA catabolic process ; DNA deamination ; nuclear mRNA surveillance ; defense response to virus ; exonucleolytic catabolism of deadenylated mRNA ; U4 snRNA 3'-end processing ; polyadenylation-dependent snoRNA 3'-end processing ; RNA catabolic process ; rRNA processing ; RNA phosphodiester bond hydrolysis, exonucleolytic ;
	Sources:Amigo / QuickGO
Orthologs
	56915
	27998
	ENSG00000077348
	ENSMUSG00000061286
	Q9NQT4
	Q9CRA8
	NM_020158
	NM_138586
	NP_064543
	NP_613052
	Wikidata
View/Edit Human	View/Edit Mouse

Last updated March 21, 2024

Exosome component 5, also known as EXOSC5, is a human gene, which is part of the exosome complex.^[5]

Biallelic pathogenic variation in EXOSC5 causes autosomal recessive cerebellar ataxia, brain abnormalities, and cardiac conduction defects (CABAC, MIM 619576).^[6]^[7]^[8]^[9] Individuals with CABAC often have delayed developmental milestones, intellectual disability, cerebellar ataxia, hypotonia, dysarthria, and dysmorphic facies. Cardiac abnormalities including conduction defects, right bundle branch block, sinus node dysfunction, intraventricular conduction delay, atrioventricular block, and/or ventricular tachycardia. Cardiac pacemakers and defibrillators have been needed, and sudden cardiac death has been reported.^[6]^[7]^[8]^[9]

Interactions

Exosome component 5 has been shown to interact with:

Exosome component 1,^[10]^[11] and
Exosome component 8.^[10]

Related Research Articles

The exosome complex is a multi-protein intracellular complex capable of degrading various types of RNA molecules. Exosome complexes are found in both eukaryotic cells and archaea, while in bacteria a simpler complex called the degradosome carries out similar functions.

Exosome component 2, also known as EXOSC2, is a protein which in humans is encoded by the EXOSC2 gene.

Exosome component 10, also known as EXOSC10, is a human gene, the protein product of which is part of the exosome complex and is an autoantigen is patients with certain auto immune diseases, most notably scleromyositis.

Exosome complex exonuclease RRP44 or Dis3 is an enzyme that in humans is encoded by the DIS3 gene. Its protein product is an RNase enzyme homologous to the yeast protein Rrp44, and can be part of the exosome complex in the nucleus of eukaryotic cells.

Ribonucleases P/MRP protein subunit POP1 is a protein that in humans is encoded by the POP1 gene.

Exosome component 8, also known as EXOSC8, is a human gene, the protein product of which is part of the exosome complex.

Exosome component 7, also known as EXOSC7, is a human gene, the protein product of which is part of the exosome complex.

Exosome component 3, also known as EXOSC3, is a human gene, which is part of the exosome complex.

Ribonuclease P/MRP protein subunit POP5 is an enzyme that in humans is encoded by the POP5 gene.

Exosome component 9, also known as EXOSC9, is a human gene, the protein product of which is part of the exosome complex and is an autoantigen is patients with certain auto immune diseases, most notably scleromyositis.

Exosome component 4, also known as EXOSC4, is a human gene, which is part of the exosome complex.

Superkiller viralicidic activity 2-like 2 is a protein that in humans is encoded by the SKIV2L2 gene.

3'-5' exoribonuclease CSL4 homolog is an enzyme that in humans is encoded by the EXOSC1 gene.

Ribonuclease P protein subunit p30 is an enzyme that in humans is encoded by the RPP30 gene.

Ribonuclease P protein subunit p38 is an enzyme that in humans is encoded by the RPP38 gene.

Ribonuclease P protein subunit p14 is an enzyme that in humans is encoded by the RPP14 gene.

Nuclear nucleic acid-binding protein C1D is a protein that in humans is encoded by the C1D gene. The C1D protein is encoded by a DNA binding gene traced in the nucleus. Protein C1D has a chromosomal location of 2p14. C1D has a family of proteins consisting of C1D homologues which may include Sas10 domains. C1D is thought to bind to RNA and DNA where it may be involved in mechanisms of DNA repair. Protein C1D is ubiquitously expressed in different human tissues.

U3 small nucleolar RNA-interacting protein 2 is a protein that in humans is encoded by the RRP9 gene.

Ribonuclease P protein subunit p29 is an enzyme that in humans is encoded by the POP4 gene.

Exosome complex exonuclease MTR3 is an enzyme that in humans is encoded by the EXOSC6 gene.

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000077348 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000061286 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Entrez Gene: EXOSC5 exosome component 5".
1 2 "Entry - #619576 - CEREBELLAR ATAXIA, BRAIN ABNORMALITIES, AND CARDIAC CONDUCTION DEFECTS; CABAC - OMIM". omim.org. Retrieved 2023-01-23.
1 2 Beheshtian M, Fattahi Z, Fadaee M, Vazehan R, Jamali P, Parsimehr E, et al. (June 2019). "Identification of disease-causing variants in the EXOSC gene family underlying autosomal recessive intellectual disability in Iranian families". Clinical Genetics. 95 (6): 718–725. doi:10.1111/cge.13549. PMID 30950035. S2CID 96434991.
1 2 Calame DG, Herman I, Fatih JM, Du H, Akay G, Jhangiani SN, et al. (August 2021). "Risk of sudden cardiac death in EXOSC5-related disease". American Journal of Medical Genetics. Part A. 185 (8): 2532–2540. doi:10.1002/ajmg.a.62352. PMC 8382094 . PMID 34089229.
1 2 Slavotinek A, Misceo D, Htun S, Mathisen L, Frengen E, Foreman M, et al. (August 2020). "Biallelic variants in the RNA exosome gene EXOSC5 are associated with developmental delays, short stature, cerebellar hypoplasia and motor weakness". Human Molecular Genetics. 29 (13): 2218–2239. doi:10.1093/hmg/ddaa108. PMC 7399534 . PMID 32504085.
1 2 Raijmakers R, Egberts WV, van Venrooij WJ, Pruijn GJ (November 2002). "Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring". Journal of Molecular Biology. 323 (4): 653–663. doi:10.1016/s0022-2836(02)00947-6. hdl: 2066/186665 . PMID 12419256.
↑ Raijmakers R, Noordman YE, van Venrooij WJ, Pruijn GJ (January 2002). "Protein-protein interactions of hCsl4p with other human exosome subunits". Journal of Molecular Biology. 315 (4): 809–818. doi:10.1006/jmbi.2001.5265. hdl: 2066/261980 . PMID 11812149.

Bonaldo MF, Lennon G, Soares MB (September 1996). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Research. 6 (9): 791–806. doi: 10.1101/gr.6.9.791 . PMID 8889548.
Allmang C, Petfalski E, Podtelejnikov A, Mann M, Tollervey D, Mitchell P (August 1999). "The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases". Genes & Development. 13 (16): 2148–2158. doi:10.1101/gad.13.16.2148. PMC 316947 . PMID 10465791.
Brouwer R, Allmang C, Raijmakers R, van Aarssen Y, Egberts WV, Petfalski E, et al. (March 2001). "Three novel components of the human exosome". The Journal of Biological Chemistry. 276 (9): 6177–6184. doi: 10.1074/jbc.M007603200 . hdl: 2066/186951 . PMID 11110791.
Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R, Pruijn GJ, et al. (November 2001). "AU binding proteins recruit the exosome to degrade ARE-containing mRNAs". Cell. 107 (4): 451–464. doi: 10.1016/S0092-8674(01)00578-5 . PMID 11719186. S2CID 14817671.
Raijmakers R, Noordman YE, van Venrooij WJ, Pruijn GJ (January 2002). "Protein-protein interactions of hCsl4p with other human exosome subunits". Journal of Molecular Biology. 315 (4): 809–818. doi:10.1006/jmbi.2001.5265. hdl: 2066/261980 . PMID 11812149.
Brouwer R, Vree Egberts WT, Hengstman GJ, Raijmakers R, van Engelen BG, Seelig HP, et al. (2002). "Autoantibodies directed to novel components of the PM/Scl complex, the human exosome". Arthritis Research. 4 (2): 134–138. doi: 10.1186/ar389 . PMC 83843 . PMID 11879549.
Yang XF, Wu CJ, Chen L, Alyea EP, Canning C, Kantoff P, et al. (October 2002). "CML28 is a broadly immunogenic antigen, which is overexpressed in tumor cells". Cancer Research. 62 (19): 5517–5522. PMC 4762257 . PMID 12359762.
Raijmakers R, Egberts WV, van Venrooij WJ, Pruijn GJ (November 2002). "Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring". Journal of Molecular Biology. 323 (4): 653–663. doi:10.1016/S0022-2836(02)00947-6. hdl: 2066/186665 . PMID 12419256.
Lehner B, Sanderson CM (July 2004). "A protein interaction framework for human mRNA degradation". Genome Research. 14 (7): 1315–1323. doi:10.1101/gr.2122004. PMC 442147 . PMID 15231747.
Andersen JS, Lam YW, Leung AK, Ong SE, Lyon CE, Lamond AI, Mann M (January 2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID 15635413. S2CID 4344740.
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, et al. (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–1178. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
Zhou H, Zhang D, Wang Y, Dai M, Zhang L, Liu W, et al. (August 2006). "Induction of CML28-specific cytotoxic T cell responses using co-transfected dendritic cells with CML28 DNA vaccine and SOCS1 small interfering RNA expression vector". Biochemical and Biophysical Research Communications. 347 (1): 200–207. doi:10.1016/j.bbrc.2006.06.093. PMID 16815301.
Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (November 2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–648. doi: 10.1016/j.cell.2006.09.026 . PMID 17081983. S2CID 7827573.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000077348 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000061286 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[entrez-5] "Entrez Gene: EXOSC5 exosome component 5".

[:0-6] 1 2 "Entry - #619576 - CEREBELLAR ATAXIA, BRAIN ABNORMALITIES, AND CARDIAC CONDUCTION DEFECTS; CABAC - OMIM". omim.org. Retrieved 2023-01-23.

[:1-7] 1 2 Beheshtian M, Fattahi Z, Fadaee M, Vazehan R, Jamali P, Parsimehr E, et al. (June 2019). "Identification of disease-causing variants in the EXOSC gene family underlying autosomal recessive intellectual disability in Iranian families". Clinical Genetics. 95 (6): 718–725. doi:10.1111/cge.13549. PMID 30950035. S2CID 96434991.

[:2-8] 1 2 Calame DG, Herman I, Fatih JM, Du H, Akay G, Jhangiani SN, et al. (August 2021). "Risk of sudden cardiac death in EXOSC5-related disease". American Journal of Medical Genetics. Part A. 185 (8): 2532–2540. doi:10.1002/ajmg.a.62352. PMC 8382094 . PMID 34089229.

[:3-9] 1 2 Slavotinek A, Misceo D, Htun S, Mathisen L, Frengen E, Foreman M, et al. (August 2020). "Biallelic variants in the RNA exosome gene EXOSC5 are associated with developmental delays, short stature, cerebellar hypoplasia and motor weakness". Human Molecular Genetics. 29 (13): 2218–2239. doi:10.1093/hmg/ddaa108. PMC 7399534 . PMID 32504085.

[pmid12419256-10] 1 2 Raijmakers R, Egberts WV, van Venrooij WJ, Pruijn GJ (November 2002). "Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring". Journal of Molecular Biology. 323 (4): 653–663. doi:10.1016/s0022-2836(02)00947-6. hdl: 2066/186665 . PMID 12419256.

[pmid11812149-11] Raijmakers R, Noordman YE, van Venrooij WJ, Pruijn GJ (January 2002). "Protein-protein interactions of hCsl4p with other human exosome subunits". Journal of Molecular Biology. 315 (4): 809–818. doi:10.1006/jmbi.2001.5265. hdl: 2066/261980 . PMID 11812149.

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Exosome component 5

Contents

Interactions

Related Research Articles

References

Further reading