Exosome component 1

Last updated
EXOSC1
Protein EXOSC1 PDB 2nn6.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases EXOSC1 , CGI-108, CSL4, Csl4p, SKI4, Ski4p, hCsl4p, p13, Exosome component 1, PCH1F
External IDs OMIM: 606493 MGI: 1913833 HomoloGene: 9359 GeneCards: EXOSC1
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001164561
NM_025644
NM_001320231
NM_001320232
NM_001320233

Contents

RefSeq (protein)

NP_001158033
NP_001307160
NP_001307161
NP_001307162
NP_079920

Location (UCSC) Chr 10: 97.44 – 97.45 Mb Chr 19: 41.91 – 41.92 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

3'-5' exoribonuclease CSL4 homolog is an enzyme that in humans is encoded by the EXOSC1 gene. [5] [6] [7]

This gene encodes a core component of the exosome complex. The mammalian exosome is required for rapid degradation of AU rich element-containing RNAs but not for poly(A) shortening. The association of this protein with the exosome is mediated by protein-protein interactions with ribosomal RNA-processing protein 42 and ribosomal RNA-processing protein 46. [7]

Interactions

Exosome component 1 has been shown to interact with:

Related Research Articles

<span class="mw-page-title-main">Exosome complex</span> Protein complex that degrades RNA

The exosome complex is a multi-protein intracellular complex capable of degrading various types of RNA molecules. Exosome complexes are found in both eukaryotic cells and archaea, while in bacteria a simpler complex called the degradosome carries out similar functions.

<span class="mw-page-title-main">Polynucleotide phosphorylase</span> Class of enzymes

Polynucleotide Phosphorylase (PNPase) is a bifunctional enzyme with a phosphorolytic 3' to 5' exoribonuclease activity and a 3'-terminal oligonucleotide polymerase activity. That is, it dismantles the RNA chain starting at the 3' end and working toward the 5' end. It also synthesizes long, highly heteropolymeric tails in vivo. It accounts for all of the observed residual polyadenylation in strains of Escherichia coli missing the normal polyadenylation enzyme. Discovered by Marianne Grunberg-Manago working in Severo Ochoa's lab in 1955, the RNA-polymerization activity of PNPase was initially believed to be responsible for DNA-dependent synthesis of messenger RNA, a notion that was disproven by the late 1950s.

<span class="mw-page-title-main">Exosome component 2</span> Protein-coding gene in the species Homo sapiens

Exosome component 2, also known as EXOSC2, is a protein which in humans is encoded by the EXOSC2 gene.

<span class="mw-page-title-main">Exosome component 10</span> Protein-coding gene in the species Homo sapiens

Exosome component 10, also known as EXOSC10, is a human gene, the protein product of which is part of the exosome complex and is an autoantigen is patients with certain auto immune diseases, most notably scleromyositis.

<span class="mw-page-title-main">DIS3</span> Protein-coding gene in the species Homo sapiens

Exosome complex exonuclease RRP44 or Dis3 is an enzyme that in humans is encoded by the DIS3 gene. Its protein product is an RNase enzyme homologous to the yeast protein Rrp44, and can be part of the exosome complex in the nucleus of eukaryotic cells.

<span class="mw-page-title-main">POP7</span> Protein-coding gene in the species Homo sapiens

Ribonuclease P protein subunit p20 is an enzyme that in humans is encoded by the POP7 gene.

<span class="mw-page-title-main">POP1 (gene)</span> Protein-coding gene in the species Homo sapiens

Ribonucleases P/MRP protein subunit POP1 is a protein that in humans is encoded by the POP1 gene.

<span class="mw-page-title-main">Exosome component 8</span> Protein-coding gene in the species Homo sapiens

Exosome component 8, also known as EXOSC8, is a human gene, the protein product of which is part of the exosome complex.

<span class="mw-page-title-main">Exosome component 7</span> Protein-coding gene in the species Homo sapiens

Exosome component 7, also known as EXOSC7, is a human gene, the protein product of which is part of the exosome complex.

<span class="mw-page-title-main">Exosome component 3</span> Protein-coding gene in the species Homo sapiens

Exosome component 3, also known as EXOSC3, is a human gene, which is part of the exosome complex.

<span class="mw-page-title-main">POP5</span> Protein-coding gene in the species Homo sapiens

Ribonuclease P/MRP protein subunit POP5 is an enzyme that in humans is encoded by the POP5 gene.

<span class="mw-page-title-main">Exosome component 9</span> Protein-coding gene in the species Homo sapiens

Exosome component 9, also known as EXOSC9, is a human gene, the protein product of which is part of the exosome complex and is an autoantigen is patients with certain auto immune diseases, most notably scleromyositis.

<span class="mw-page-title-main">Exosome component 4</span> Protein-coding gene in the species Homo sapiens

Exosome component 4, also known as EXOSC4, is a human gene, which is part of the exosome complex.

<span class="mw-page-title-main">SKIV2L2</span> Protein-coding gene in the species Homo sapiens

Superkiller viralicidic activity 2-like 2 is a protein that in humans is encoded by the SKIV2L2 gene.

<span class="mw-page-title-main">Exosome component 5</span> Protein-coding gene in the species Homo sapiens

Exosome component 5, also known as EXOSC5, is a human gene, which is part of the exosome complex.

<span class="mw-page-title-main">RPP38</span> Protein-coding gene in the species Homo sapiens

Ribonuclease P protein subunit p38 is an enzyme that in humans is encoded by the RPP38 gene.

<span class="mw-page-title-main">RPP14</span> Protein-coding gene in the species Homo sapiens

Ribonuclease P protein subunit p14 is an enzyme that in humans is encoded by the RPP14 gene.

<span class="mw-page-title-main">C1D</span> Protein-coding gene in the species Homo sapiens

Nuclear nucleic acid-binding protein C1D is a protein that in humans is encoded by the C1D gene. The C1D protein is encoded by a DNA binding gene traced in the nucleus. Protein C1D has a chromosomal location of 2p14. C1D has a family of proteins consisting of C1D homologues which may include Sas10 domains. C1D is thought to bind to RNA and DNA where it may be involved in mechanisms of DNA repair. Protein C1D is ubiquitously expressed in different human tissues.

<span class="mw-page-title-main">RRP9</span> Protein-coding gene in the species Homo sapiens

U3 small nucleolar RNA-interacting protein 2 is a protein that in humans is encoded by the RRP9 gene.

<span class="mw-page-title-main">Exosome component 6</span> Protein-coding gene in the species Homo sapiens

Exosome complex exonuclease MTR3 is an enzyme that in humans is encoded by the EXOSC6 gene.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000171311 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000034321 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. 1 2 3 Raijmakers R, Noordman YE, van Venrooij WJ, Pruijn GJ (Jan 2002). "Protein-protein interactions of hCsl4p with other human exosome subunits" (PDF). J Mol Biol. 315 (4): 809–18. doi:10.1006/jmbi.2001.5265. hdl:2066/261980. PMID   11812149.
  6. Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R, Pruijn GJ, Stoecklin G, Moroni C, Mann M, Karin M (Nov 2001). "AU binding proteins recruit the exosome to degrade ARE-containing mRNAs". Cell. 107 (4): 451–64. doi: 10.1016/S0092-8674(01)00578-5 . PMID   11719186. S2CID   14817671.
  7. 1 2 "Entrez Gene: EXOSC1 exosome component 1".
  8. 1 2 3 Raijmakers R, Egberts WV, van Venrooij WJ, Pruijn GJ (Nov 2002). "Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring". J. Mol. Biol. 323 (4): 653–63. doi:10.1016/s0022-2836(02)00947-6. hdl: 2066/186665 . PMID   12419256.

Further reading