Hyphomicrobium chloromethanicum

Last updated

Hyphomicrobium chloromethanicum
Scientific classification
Domain:
Phylum:
Class:
Order:
Family:
Genus:
Species:
H. chloromethanicum
Binomial name
Hyphomicrobium chloromethanicum
McDonald et al. 2001 [1]
Type strain
CM2, NCIMB 13687, VKM B-2176 [2]

Hyphomicrobium chloromethanicum is an aerobic, methylotrophic bacteria from the genus of Hyphomicrobium which can utilize chloromethane as the only source of carbon. [3] [4] [5] [6]

Related Research Articles

<span class="mw-page-title-main">Acidobacteriota</span> Phylum of bacteria

Acidobacteriota is a phylum of Gram-negative bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture.

Methanotrophs are prokaryotes that metabolize methane as their source of carbon and chemical energy. They are bacteria or archaea, can grow aerobically or anaerobically, and require single-carbon compounds to survive.

Dehalococcoides is a genus of bacteria within class Dehalococcoidia that obtain energy via the oxidation of hydrogen and subsequent reductive dehalogenation of halogenated organic compounds in a mode of anaerobic respiration called organohalide respiration. They are well known for their great potential to remediate halogenated ethenes and aromatics. They are the only bacteria known to transform highly chlorinated dioxins, PCBs. In addition, they are the only known bacteria to transform tetrachloroethene to ethene.

In taxonomy, Pseudovibrio is a genus of the Hyphomicrobiales. Bacteria belonging to this genus have been often isolated from marine invertebrates and have been described to be metabolically versatile. Recent comparative genomic analyses revealed that these organisms have the genomic potential to produce a great array of systems to interact with their hosts, including type III, IV, VI secretion systems and different type of toxin-like proteins. Moreover, in their genomes several biosynthetic gene clusters producing potentially novel bioactive compounds were recently identified.

<span class="mw-page-title-main">Aryldialkylphosphatase</span>

Aryldialkylphosphatase is a metalloenzyme that hydrolyzes the triester linkage found in organophosphate insecticides:

<span class="mw-page-title-main">Bacterial phyla</span> Phyla or divisions of the domain Bacteria

Bacterial phyla constitute the major lineages of the domain Bacteria. While the exact definition of a bacterial phylum is debated, a popular definition is that a bacterial phylum is a monophyletic lineage of bacteria whose 16S rRNA genes share a pairwise sequence identity of ~75% or less with those of the members of other bacterial phyla.

<span class="mw-page-title-main">Zetaproteobacteria</span> Class of bacteria

The class Zetaproteobacteria is the sixth and most recently described class of the Pseudomonadota. Zetaproteobacteria can also refer to the group of organisms assigned to this class. The Zetaproteobacteria were originally represented by a single described species, Mariprofundus ferrooxydans, which is an iron-oxidizing neutrophilic chemolithoautotroph originally isolated from Kamaʻehuakanaloa Seamount in 1996 (post-eruption). Molecular cloning techniques focusing on the small subunit ribosomal RNA gene have also been used to identify a more diverse majority of the Zetaproteobacteria that have as yet been unculturable.

<i>Geobacter sulfurreducens</i> Species of bacterium

Geobacter sulfurreducens is a gram-negative metal- and sulphur-reducing proteobacterium. It is rod-shaped, aerotolerant anaerobe, non-fermentative, has flagellum and type four pili, and is closely related to Geobacter metallireducens. Geobacter sulfurreducens is an anaerobic species of bacteria that comes from the family of bacteria called Geobacteraceae. Under the genus of Geobacter, G. sulfurreducens is one out of twenty different species. The Geobacter genus was discovered by Derek R. Lovley in 1987. G. sulfurreducens was first isolated in Norman, Oklahoma, USA from materials found around the surface of a contaminated ditch.

Methylocella silvestris is a bacterium from the genus Methylocella spp which are found in many acidic soils and wetlands. Historically, Methylocella silvestris was originally isolated from acidic forest soils in Germany, and it is described as Gram-negative, aerobic, non-pigmented, non-motile, rod-shaped and methane-oxidizing facultative methanotroph. As an aerobic methanotrophic bacteria, Methylocella spp use methane (CH4), and methanol as their main carbon and energy source, as well as multi compounds acetate, pyruvate, succinate, malate, and ethanol. They were known to survive in the cold temperature from 4° to 30° degree of Celsius with the optimum at around 15° to 25 °C, but no more than 36 °C. They grow better in the pH scale between 4.5 to 7.0. It lacks intracytoplasmic membranes common to all methane-oxidizing bacteria except Methylocella, but contain a vesicular membrane system connected to the cytoplasmic membrane. BL2T (=DSM 15510T=NCIMB 13906T) is the type strain.

Desulfitobacterium dehalogenans is a species of bacteria. They are facultative organohalide respiring bacteria capable of reductively dechlorinating chlorophenolic compounds and tetrachloroethene. They are anaerobic, motile, Gram-positive and rod-shaped bacteria capable of utilizing a wide range of electron donors and acceptors. The type strain JW/IU-DCT, DSM 9161, NCBi taxonomy ID 756499.

Desulfitobacterium hafniense is a species of gram positive bacteria, its type strain is DCB-2T..

Roseburia inulinivorans is a bacterium first isolated from human faeces. It is anaerobic, Gram-positive or Gram-variable, slightly curved rod-shaped and motile. The cells range in size from 0.5-1.5 to 5.0 micrometres. A2-194(T) is the type strain.

<i>Salinispora</i> Genus of bacteria

Salinispora is a genus of obligately aerobic, gram-positive, non-acid-fast bacteria belonging to the family of Micromonosporaceae. They are heterotrophic, non-motile, and obligately grow under high osmotic/ionic-strength conditions. They are the first identified genus of gram-positive bacteria which has a high osmotic/ionic-strength requirement for survival. They are widely abundant in tropical marine sediments and were first identified in 2002. This genus of bacteria has potential biotechnological significance due to their production of novel secondary metabolites which can be used pharmaceutically.

Treponema primitia is a bacterium, the first termite gut spirochete to be isolated, together with Treponema azotonutricium.

Roseivivax halodurans is a species of bacteria, the type species of its genus. It is aerobic and bacteriochlorophyll-containing, first isolated from the charophytes on the stromatolites of a saline lake located on the west coast of Australia. It is chemoheterotrophic, Gram-negative, motile, rod-shaped and with subpolar flagella. Its type strain is OCh 239T.

<span class="mw-page-title-main">Hyphomicrobium</span> Genus of bacteria

Hyphomicrobium is a genus of Gram-negative, non-spore-forming, rod-shaped bacteria from the family of Hyphomicrobiaceae. It has a large polar or sub-polar filiform prostheca very similar to that of Caulobacter. In addition to having a nutritional function, the prostheca also plays a role in the initiation of DNA replication.

Hyphomicrobium sulfonivorans is a bacterium from the genus of Hyphomicrobium which was isolated from garden soil in Warwickshire in England.

Dokdonia donghaensis is a strictly aerobic, gram-negative, phototrophic bacterium that thrives in marine environments. The organism can grow at a broad range of temperatures on seawater media. It has the ability to form biofilms, which increases the organism's resistance to antimicrobial agents, such as tetracycline.

Methylophaga thiooxydans is a methylotrophic bacterium that requires high salt concentrations for growth. It was originally isolated from a culture of the algae Emiliania huxleyi, where it grows by breaking down dimethylsulfoniopropionate from E. hexleyi into dimethylsulfide and acrylate. M. thiooxydans has been implicated as a dominant organism in phytoplankton blooms, where it consumes dimethylsulfide, methanol and methyl bromide released by dying phytoplankton. It was also identified as one of the dominant organisms present in the plume following the Deepwater Horizon oil spill, and was identified as a major player in the breakdown of methanol in coastal surface water in the English Channel.

Cytophagales is an order of non-spore forming, rod-shaped, Gram-negative bacteria that move through a gliding or flexing motion. These chemoorganotrophs are important remineralizers of organic materials into micronutrients. They are widely dispersed in the environment, found in ecosystems including soil, freshwater, seawater and sea ice. Cytophagales is included in the Bacteroidota phylum.

References

  1. LPSN lpsn.dsmz.de
  2. "Straininfo of Hyphomicrobium chloromethanicum". Archived from the original on 2014-12-27. Retrieved 2014-12-27.
  3. UniProt
  4. I R McDonald; N V Doronina; Y A Trotsenko; C McAnulla; J C Murrell (January 2001). "Hyphomicrobium chloromethanicum sp. nov. and Methylobacterium chloromethanicum sp. nov., chloromethane-utilizing bacteria isolated from a polluted environment". Int J Syst Evol Microbiol. 51 (1): 119–122. doi: 10.1099/00207713-51-1-119 . PMID   11211248.
  5. McAnulla, C; Woodall, C. A.; McDonald, I. R.; Studer, A; Vuilleumier, S; Leisinger, T; Murrell, J. C. (2001). "Chloromethane utilization gene cluster from Hyphomicrobium chloromethanicum strain CM2(T) and development of functional gene probes to detect halomethane-degrading bacteria". Applied and Environmental Microbiology. 67 (1): 307–16. Bibcode:2001ApEnM..67..307M. doi:10.1128/AEM.67.1.307-316.2001. PMC   92571 . PMID   11133460.
  6. Borodina, E; McDonald, I. R.; Murrell, J. C. (2004). "Chloromethane-dependent expression of the cmu gene cluster of Hyphomicrobium chloromethanicum". Applied and Environmental Microbiology. 70 (7): 4177–86. Bibcode:2004ApEnM..70.4177B. doi:10.1128/AEM.70.7.4177-4186.2004. PMC   444766 . PMID   15240299.