PIF1 5'-to-3' DNA helicase

Last updated
PIF1
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases PIF1 , C15orf20, PIF, PIF1 5'-to-3' DNA helicase
External IDs OMIM: 610953 MGI: 2143057 HomoloGene: 99775 GeneCards: PIF1
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001286496
NM_001286497
NM_001286499
NM_025049

NM_172453
NM_001357526
NM_001357527

RefSeq (protein)

NP_001273425
NP_001273426
NP_001273428
NP_079325

NP_766041
NP_001344455
NP_001344456

Location (UCSC) Chr 15: 64.82 – 64.83 Mb Chr 9: 65.59 – 65.6 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

PIF1 5'-to-3' DNA helicase is a protein that in humans is encoded by the PIF1 gene. [5]

Contents

Function

This gene encodes a DNA-dependent adenosine triphosphate (ATP)-metabolizing enzyme that functions as a 5' to 3' DNA helicase. The encoded protein can resolve G-quadruplex structures and RNA-DNA hybrids at the ends of chromosomes. It also prevents telomere elongation by inhibiting the actions of telomerase. Alternative splicing and the use of alternative start codons results in multiple isoforms that are differentially localized to either the mitochondria or the nucleus. [provided by RefSeq, Nov 2013].

Related Research Articles

Helicase Class of enzymes to unpack an organisms genes

Helicases are a class of enzymes thought to be vital to all organisms. Their main function is to unpack an organism's genes. They are motor proteins that move directionally along a nucleic acid phosphodiester backbone, separating two annealed nucleic acid strands such as DNA and RNA, using energy from ATP hydrolysis. There are many helicases, representing the great variety of processes in which strand separation must be catalyzed. Approximately 1% of eukaryotic genes code for helicases. The human genome codes for 95 non-redundant helicases: 64 RNA helicases and 31 DNA helicases. Many cellular processes, such as DNA replication, transcription, translation, recombination, DNA repair, and ribosome biogenesis involve the separation of nucleic acid strands that necessitates the use of helicases.

G-quadruplex Structure in molecular biology

In molecular biology, G-quadruplex secondary structures (G4) are formed in nucleic acids by sequences that are rich in guanine. They are helical in shape and contain guanine tetrads that can form from one, two or four strands. The unimolecular forms often occur naturally near the ends of the chromosomes, better known as the telomeric regions, and in transcriptional regulatory regions of multiple genes, both in microbes and across vertebrates including oncogenes in humans. Four guanine bases can associate through Hoogsteen hydrogen bonding to form a square planar structure called a guanine tetrad, and two or more guanine tetrads can stack on top of each other to form a G-quadruplex.

XPB

XPB is an ATP-dependent DNA helicase in humans that is a part of the TFIIH transcription factor complex.

Ku70

Ku70 is a protein that, in humans, is encoded by the XRCC6 gene.

APEX1

DNA-(apurinic or apyrimidinic site) lyase is an enzyme that in humans is encoded by the APEX1 gene.

Replication protein A1

Replication protein A 70 kDa DNA-binding subunit is a protein that in humans is encoded by the RPA1 gene.

MCM4

DNA replication licensing factor MCM4 is a protein that in humans is encoded by the MCM4 gene.

DDX5 Protein-coding gene in Homo sapiens

Probable ATP-dependent RNA helicase DDX5 also known as DEAD box protein 5 or RNA helicase p68 is an enzyme that in humans is encoded by the DDX5 gene.

DDX17

Probable ATP-dependent RNA helicase DDX17 (p72) is an enzyme that in humans is encoded by the DDX17 gene.

Twinkle (protein)

Twinkle protein also known as twinkle mtDNA helicase is a mitochondrial protein that in humans is encoded by the TWNK gene located in the long arm of chromosome 10 (10q24.31).

TOP3A

DNA topoisomerase 3-alpha is an enzyme that in humans is encoded by the TOP3A gene.

DDX11

Probable ATP-dependent RNA helicase DDX11 is an enzyme that in humans is encoded by the DDX11 gene.

RECQL

ATP-dependent DNA helicase Q1 is an enzyme that in humans is encoded by the RECQL gene.

ZNF143

Zinc finger protein 143 is a protein that in humans is encoded by the ZNF143 gene.

RBMS1

RNA-binding motif, single-stranded-interacting protein 1 is a protein that in humans is encoded by the RBMS1 gene.

DHX36

Probable ATP-dependent RNA helicase DHX36 also known as DEAH box protein 36 (DHX36) or MLE-like protein 1 (MLEL1) or G4 resolvase 1 (G4R1) or RNA helicase associated with AU-rich elements (RHAU) is an enzyme that in humans is encoded by the DHX36 gene.

RECQL5

ATP-dependent DNA helicase Q5 is an enzyme that in humans is encoded by the RECQL5 gene.

RHAU is a 114-kDa human RNA helicase of the DEAH-box family of helicases encoded by the DHX36 gene.

POLD4

DNA polymerase delta subunit 4, also known as DNA polymerase delta subunit p12, is a protein that in humans is encoded by the POLD4 gene. It is a component of the DNA polymerase delta complex.

RRM3

RRM3 is a gene that encodes a 5′-to-3′ DNA helicase known affect multiple cellular replication and repair processes and is most commonly studied in Saccharomyces cerevisiae. RRM3 formally stands for Ribosomal DNArecombination mutation 3. The gene codes for nuclear protein Rrm3p, which is 723 amino acids in length, and is part of a Pif1p DNA helicase sub-family that is conserved from yeasts to humans. RRM3 and its encoded protein have been shown to be vital for cellular replication, specifically associating with replication forks genome-wide. RRM3 is located on chromosome 8 in yeast cells and codes for 723 amino acids producing a protein that weighs 81,581 Da.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000140451 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000041064 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. "Entrez Gene: PIF1 5'-to-3' DNA helicase" . Retrieved 2018-05-17.

Further reading

This article incorporates text from the United States National Library of Medicine, which is in the public domain.