RANBP1

RANBP1
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	1K5D, 1K5G
Identifiers
Aliases	RANBP1 , HTF9A, RAN binding protein 1
External IDs	OMIM: 601180 MGI: 96269 HomoloGene: 21600 GeneCards: RANBP1
Gene location (Human)
Chr.	Chromosome 22 (human)
End	20,127,355 bp
Gene location (Mouse)
Chr.	Chromosome 16 (mouse)
End	18,066,596 bp
RNA expression pattern
	Top expressed in
	ganglionic eminence; ; prefrontal cortex; ; cerebellar hemisphere; ; left uterine tube; ; right adrenal gland; ; appendix; ; thymus; ; Brodmann area 9; ; right lobe of liver; ; skin of abdomen;
	Top expressed in
	yolk sac; ; neural tube; ; mesencephalon; ; ganglionic eminence; ; mirror; ; uterus; ; thymus; ; olfactory bulb; ; placenta; ; stomach;
	More reference expression data
	n/a
Gene ontology
Molecular function	GTPase activator activity ; GDP-dissociation inhibitor activity ; protein binding ; cadherin binding ;
Cellular component	cytoplasm ; nuclear envelope ; nucleus ; centrosome ; cytosol ; nuclear pore ;
Biological process	positive regulation of GTPase activity ; intracellular transport ; viral process ; signal transduction ; ubiquitin-dependent protein catabolic process ; regulation of catalytic activity ; protein import into nucleus ; spindle organization ; positive regulation of mitotic centrosome separation ; RNA export from nucleus ; G1/S transition of mitotic cell cycle ;
	Sources:Amigo / QuickGO
Orthologs
	5902
	19385
	ENSG00000099901
	ENSMUSG00000005732
	P43487
	P34022
	NM_001278639 ; NM_001278640 ; NM_001278641 ; NM_002882
	NM_011239
	NP_001265568 ; NP_001265569 ; NP_001265570 ; NP_002873
	NP_035369
	Wikidata
View/Edit Human	View/Edit Mouse

Last updated December 03, 2023

Ran-specific binding protein 1 is an enzyme that in humans is encoded by the RANBP1 gene.^[5]^[6]^[7]

Ran/TC4-binding protein, RanBP1, interacts specifically with GTP-charged RAN. RANBP1 encodes a 23-kD protein that binds to RAN complexed with GTP but not GDP. RANBP1 does not activate GTPase activity of RAN but does markedly increase GTP hydrolysis by the RanGTPase-activating protein (RANGAP1). The RANBP1 cDNA encodes a 201-amino acid protein that is 92% similar to its mouse homolog. In both mammalian cells and in yeast, RANBP1 acts as a negative regulator of RCC1 by inhibiting RCC1-stimulated guanine nucleotide release from RAN.^[7]

Interactions

RANBP1 has been shown to interact with XPO1,^[8]^[9] KPNB1 ^[9]^[10] and Ran.^[9]^[11]^[12]

Related Research Articles

Ran also known as GTP-binding nuclear protein Ran is a protein that in humans is encoded by the RAN gene. Ran is a small 25 kDa protein that is involved in transport into and out of the cell nucleus during interphase and also involved in mitosis. It is a member of the Ras superfamily.

Importin subunit beta-1 is a protein that in humans is encoded by the KPNB1 gene.

RAS p21 protein activator 1 or RasGAP, also known as RASA1, is a 120-kDa cytosolic human protein that provides two principal activities:

RAN binding protein 2 (RANBP2) is protein which in humans is encoded by the RANBP2 gene. It is also known as nucleoporin 358 (Nup358) since it is a member nucleoporin family that makes up the nuclear pore complex. RanBP2 has a mass of 358 kDa.

Cell division control protein 6 homolog is a protein that in humans is encoded by the CDC6 gene.

Regulator of chromosome condensation 1, also known as RCC1, Ran guanine nucleotide exchange factor and RanGEF, is the name for a human gene and protein.

Nucleoporin 153 (Nup153) is a protein which in humans is encoded by the NUP153 gene. It is an essential component of the basket of nuclear pore complexes (NPCs) in vertebrates, and required for the anchoring of NPCs. It also acts as the docking site of an importing karyopherin. On the cytoplasmic side of the NPC, Nup358 fulfills an analogous role.

<span class="mw-page-title-main">CTBP1</span> Protein-coding gene in the species Homo sapiens

C-terminal-binding protein 1 also known as CtBP1 is a protein that in humans is encoded by the CTBP1 gene. CtBP1 is one of two CtBP proteins, the other protein being CtBP2.

Activating transcription factor 2, also known as ATF2, is a protein that, in humans, is encoded by the ATF2 gene.

Ran GTPase-activating protein 1 is an enzyme that in humans is encoded by the RANGAP1 gene.

Rho-related GTP-binding protein RhoQ is a protein that in humans is encoded by the RHOQ gene.

Eukaryotic translation initiation factor 2 subunit 2 (eIF2β) is a protein that in humans is encoded by the EIF2S2 gene.

Ras-related protein R-Ras2 is a protein that in humans is encoded by the RRAS2 gene.

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 is a protein that in humans is encoded by the SMARCD1 gene.

Eukaryotic translation initiation factor 5 is a protein that in humans is encoded by the EIF5 gene.

Importin-7 is a protein that in humans is encoded by the IPO7 gene.

NTF2-related export protein 1 is a protein that in humans is encoded by the NXT1 gene.

Ran-binding protein 3 is a protein that in humans is encoded by the RANBP3 gene.

Exportin-T is a protein that in humans is encoded by the XPOT gene.

Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 is an enzyme that in humans is encoded by the AGAP3 gene.

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000099901 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000005732 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ Hayashi N, Yokoyama N, Seki T, Azuma Y, Ohba T, Nishimoto T (August 1995). "RanBP1, a Ras-like nuclear G protein binding to Ran/TC4, inhibits RCC1 via Ran/TC4". Mol Gen Genet. 247 (6): 661–9. doi:10.1007/BF00290397. PMID 7616957. S2CID 24266692.
↑ Kehlenbach RH, Dickmanns A, Kehlenbach A, Guan T, Gerace L (July 1999). "A Role for RanBP1 in the Release of CRM1 from the Nuclear Pore Complex in a Terminal Step of Nuclear Export". J Cell Biol. 145 (4): 645–57. doi:10.1083/jcb.145.4.645. PMC 2133185 . PMID 10330396.
1 2 "Entrez Gene: RANBP1 RAN binding protein 1".
↑ Singh, B B; Patel H H; Roepman R; Schick D; Ferreira P A (December 1999). "The zinc finger cluster domain of RanBP2 is a specific docking site for the nuclear export factor, exportin-1". J. Biol. Chem. 274 (52): 37370–8. doi: 10.1074/jbc.274.52.37370 . ISSN 0021-9258. PMID 10601307.
1 2 3 Plafker, K; Macara I G (May 2000). "Facilitated Nucleocytoplasmic Shuttling of the Ran Binding Protein RanBP1". Mol. Cell. Biol. 20 (10): 3510–21. doi:10.1128/MCB.20.10.3510-3521.2000. ISSN 0270-7306. PMC 85643 . PMID 10779340.
↑ Yaseen, N R; Blobel G (September 1999). "GTP hydrolysis links initiation and termination of nuclear import on the nucleoporin nup358". J. Biol. Chem. 274 (37): 26493–502. doi: 10.1074/jbc.274.37.26493 . ISSN 0021-9258. PMID 10473610.
↑ Ren, M; Villamarin A; Shih A; Coutavas E; Moore M S; LoCurcio M; Clarke V; Oppenheim J D; D'Eustachio P; Rush M G (April 1995). "Separate domains of the Ran GTPase interact with different factors to regulate nuclear protein import and RNA processing". Mol. Cell. Biol. 15 (4): 2117–24. doi:10.1128/MCB.15.4.2117. ISSN 0270-7306. PMC 230439 . PMID 7891706.
↑ Steggerda, S M; Paschal B M (July 2000). "The mammalian Mog1 protein is a guanine nucleotide release factor for Ran". J. Biol. Chem. 275 (30): 23175–80. doi: 10.1074/jbc.C000252200 . ISSN 0021-9258. PMID 10811801.

Bischoff FR, Krebber H, Smirnova E, et al. (1995). "Co-activation of RanGTPase and inhibition of GTP dissociation by Ran-GTP binding protein RanBP1". EMBO J. 14 (4): 705–15. doi:10.1002/j.1460-2075.1995.tb07049.x. PMC 398135 . PMID 7882974.
Ren M, Villamarin A, Shih A, et al. (1995). "Separate domains of the Ran GTPase interact with different factors to regulate nuclear protein import and RNA processing". Mol. Cell. Biol. 15 (4): 2117–24. doi:10.1128/MCB.15.4.2117. PMC 230439 . PMID 7891706.
Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
Coutavas E, Ren M, Oppenheim JD, et al. (1994). "Characterization of proteins that interact with the cell-cycle regulatory protein Ran/TC4". Nature. 366 (6455): 585–7. Bibcode:1993Natur.366..585C. doi:10.1038/366585a0. PMID 8255297. S2CID 4302198.
Zolotukhin AS, Felber BK (1997). "Mutations in the nuclear export signal of human ran-binding protein RanBP1 block the Rev-mediated posttranscriptional regulation of human immunodeficiency virus type 1". J. Biol. Chem. 272 (17): 11356–60. doi: 10.1074/jbc.272.17.11356 . PMID 9111043.
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
Plafker K, Macara IG (2000). "Facilitated Nucleocytoplasmic Shuttling of the Ran Binding Protein RanBP1". Mol. Cell. Biol. 20 (10): 3510–21. doi:10.1128/MCB.20.10.3510-3521.2000. PMC 85643 . PMID 10779340.
Steggerda SM, Paschal BM (2000). "The mammalian Mog1 protein is a guanine nucleotide release factor for Ran". J. Biol. Chem. 275 (30): 23175–80. doi: 10.1074/jbc.C000252200 . PMID 10811801.
Maynard TM, Haskell GT, Bhasin N, et al. (2002). "RanBP1, a velocardiofacial/DiGeorge syndrome candidate gene, is expressed at sites of mesenchymal/epithelial induction". Mech. Dev. 111 (1–2): 177–80. doi: 10.1016/S0925-4773(01)00616-5 . PMID 11804793.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC 139241 . PMID 12477932.
Di Fiore B, Ciciarello M, Mangiacasale R, et al. (2004). "Mammalian RanBP1 regulates centrosome cohesion during mitosis". J. Cell Sci. 116 (Pt 16): 3399–411. doi: 10.1242/jcs.00624 . PMID 12840069.
Seewald MJ, Kraemer A, Farkasovsky M, et al. (2003). "Biochemical Characterization of the Ran-RanBP1-RanGAP System: Are RanBP Proteins and the Acidic Tail of RanGAP Required for the Ran-RanGAP GTPase Reaction?". Mol. Cell. Biol. 23 (22): 8124–36. doi:10.1128/MCB.23.22.8124-8136.2003. PMC 262373 . PMID 14585972.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID 14702039.
Bohlson SS, Zhang M, Ortiz CE, Tenner AJ (2005). "CD93 interacts with the PDZ domain-containing adaptor protein GIPC: implications in the modulation of phagocytosis". J. Leukoc. Biol. 77 (1): 80–9. doi:10.1189/jlb.0504305. PMID 15459234. S2CID 3219168.
Collins JE, Wright CL, Edwards CA, et al. (2005). "A genome annotation-driven approach to cloning the human ORFeome". Genome Biol. 5 (10): R84. doi: 10.1186/gb-2004-5-10-r84 . PMC 545604 . PMID 15461802.
Bruneel A, Labas V, Mailloux A, et al. (2006). "Proteomics of human umbilical vein endothelial cells applied to etoposide-induced apoptosis". Proteomics. 5 (15): 3876–84. doi:10.1002/pmic.200401239. PMID 16130169. S2CID 26007149.
Takeda E, Hieda M, Katahira J, Yoneda Y (2006). "Phosphorylation of RanGAP1 stabilizes its interaction with Ran and RanBP1". Cell Struct. Funct. 30 (2): 69–80. doi: 10.1247/csf.30.69 . PMID 16428860.
Ewing RM, Chu P, Elisma F, et al. (2007). "Large-scale mapping of human protein–protein interactions by mass spectrometry". Mol. Syst. Biol. 3 (1): 89. doi:10.1038/msb4100134. PMC 1847948 . PMID 17353931.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000099901 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000005732 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid7616957-5] Hayashi N, Yokoyama N, Seki T, Azuma Y, Ohba T, Nishimoto T (August 1995). "RanBP1, a Ras-like nuclear G protein binding to Ran/TC4, inhibits RCC1 via Ran/TC4". Mol Gen Genet. 247 (6): 661–9. doi:10.1007/BF00290397. PMID 7616957. S2CID 24266692.

[pmid10330396-6] Kehlenbach RH, Dickmanns A, Kehlenbach A, Guan T, Gerace L (July 1999). "A Role for RanBP1 in the Release of CRM1 from the Nuclear Pore Complex in a Terminal Step of Nuclear Export". J Cell Biol. 145 (4): 645–57. doi:10.1083/jcb.145.4.645. PMC 2133185 . PMID 10330396.

[entrez-7] 1 2 "Entrez Gene: RANBP1 RAN binding protein 1".

[pmid10601307-8] Singh, B B; Patel H H; Roepman R; Schick D; Ferreira P A (December 1999). "The zinc finger cluster domain of RanBP2 is a specific docking site for the nuclear export factor, exportin-1". J. Biol. Chem. 274 (52): 37370–8. doi: 10.1074/jbc.274.52.37370 . ISSN 0021-9258. PMID 10601307.

[pmid10779340-9] 1 2 3 Plafker, K; Macara I G (May 2000). "Facilitated Nucleocytoplasmic Shuttling of the Ran Binding Protein RanBP1". Mol. Cell. Biol. 20 (10): 3510–21. doi:10.1128/MCB.20.10.3510-3521.2000. ISSN 0270-7306. PMC 85643 . PMID 10779340.

[pmid10473610-10] Yaseen, N R; Blobel G (September 1999). "GTP hydrolysis links initiation and termination of nuclear import on the nucleoporin nup358". J. Biol. Chem. 274 (37): 26493–502. doi: 10.1074/jbc.274.37.26493 . ISSN 0021-9258. PMID 10473610.

[pmid7891706-11] Ren, M; Villamarin A; Shih A; Coutavas E; Moore M S; LoCurcio M; Clarke V; Oppenheim J D; D'Eustachio P; Rush M G (April 1995). "Separate domains of the Ran GTPase interact with different factors to regulate nuclear protein import and RNA processing". Mol. Cell. Biol. 15 (4): 2117–24. doi:10.1128/MCB.15.4.2117. ISSN 0270-7306. PMC 230439 . PMID 7891706.

[pmid10811801-12] Steggerda, S M; Paschal B M (July 2000). "The mammalian Mog1 protein is a guanine nucleotide release factor for Ran". J. Biol. Chem. 275 (30): 23175–80. doi: 10.1074/jbc.C000252200 . ISSN 0021-9258. PMID 10811801.

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RANBP1

Contents

Interactions

Related Research Articles

References

Further reading