RBBP6

RBBP6
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2C7H, 2YSA, 2YUR, 3ZTG
Identifiers
Aliases	RBBP6 , MY038, P2P-R, PACT, RBQ-1, SNAMA, retinoblastoma binding protein 6, RB binding protein 6, ubiquitin ligase
External IDs	OMIM: 600938; MGI: 894835; HomoloGene: 136812; GeneCards: RBBP6; OMA:RBBP6 - orthologs
Gene location (Human) Chr. Chromosome 16 (human) [1] Band 16p12.1 Start 24,537,693 bp [1] End 24,572,863 bp [1]
Gene location (Mouse) Chr. Chromosome 7 (mouse) [2] Band 7|7 F2 Start 122,564,909 bp [2] End 122,601,780 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in buccal mucosa cell sperm gastric mucosa left ovary mucosa of paranasal sinus right ovary right uterine tube left testis right testis skin of abdomen Top expressed in tail of embryo genital tubercle medullary collecting duct neural layer of retina ventricular zone Ileal epithelium thymus spermatid plantaris muscle renal corpuscle More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein binding zinc ion binding nucleic acid binding metal ion binding ubiquitin-protein transferase activity ubiquitin protein ligase activity transferase activity RNA binding protein kinase binding Cellular component nucleolus microtubule organizing center nucleus chromosome cytoplasm cytoskeleton cytosol centrosome nuclear speck protein-containing complex Biological process in utero embryonic development embryonic organ development regulation of DNA replication DNA replication cellular response to DNA damage stimulus protein ubiquitination multicellular organism growth somite development mRNA processing protein polyubiquitination ubiquitin-dependent protein catabolic process Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 5930 19647 Ensembl ENSG00000122257 ENSMUSG00000030779 UniProt Q7Z6E9 P97868 RefSeq (mRNA) NM_006910 NM_018703 NM_032626 NM_011247 NM_175023 RefSeq (protein) NP_008841 NP_061173 NP_116015 NP_035377 NP_778188 NP_001390011 NP_001390012 Location (UCSC) Chr 16: 24.54 – 24.57 Mb Chr 7: 122.56 – 122.6 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Retinoblastoma-binding protein 6 is a protein that in humans is encoded by the RBBP6 gene. ^{[5] [6] [7]}

Function

The retinoblastoma tumor suppressor (pRB) protein binds with many other proteins. In various human cancers, pRB suppresses cellular proliferation and is inactivated. Cell cycle-dependent phosphorylation regulates the activity of pRB. This gene encodes a protein which binds to underphosphorylated but not phosphorylated pRB. Multiple alternatively spliced transcript variants that encode different isoforms have been found for this gene. ^[7]

Interactions

RBBP6 has been shown to interact with Y box binding protein 1. ^[8]

References

1. GRCh38: Ensembl release 89: ENSG00000122257 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000030779 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Sakai Y, Saijo M, Coelho K, Kishino T, Niikawa N, Taya Y (Nov 1995). "cDNA sequence and chromosomal localization of a novel human protein, RBQ-1 (RBBP6), that binds to the retinoblastoma gene product". Genomics. 30 (1): 98–101. doi:10.1006/geno.1995.0017. PMID   8595913.
6. Pugh DJ, Ab E, Faro A, Lutya PT, Hoffmann E, Rees DJ (Feb 2006). "DWNN, a novel ubiquitin-like domain, implicates RBBP6 in mRNA processing and ubiquitin-like pathways". BMC Structural Biology. 6: 1. doi: 10.1186/1472-6807-6-1 . PMC   1360078 . PMID   16396680.
7. "Entrez Gene: RBBP6 retinoblastoma binding protein 6".
8. Chibi M, Meyer M, Skepu A, G Rees DJ, Moolman-Smook JC, Pugh DJ (Dec 2008). "RBBP6 interacts with multifunctional protein YB-1 through its RING finger domain, leading to ubiquitination and proteosomal degradation of YB-1". Journal of Molecular Biology. 384 (4): 908–16. doi:10.1016/j.jmb.2008.09.060. PMID   18851979.

Further reading

• Simons A, Melamed-Bessudo C, Wolkowicz R, Sperling J, Sperling R, Eisenbach L, Rotter V (Jan 1997). "PACT: cloning and characterization of a cellular p53 binding protein that interacts with Rb". Oncogene. 14 (2): 145–55. doi: 10.1038/sj.onc.1200825 . PMID   9010216.
• Gao S, Witte MM, Scott RE (May 2002). "P2P-R protein localizes to the nucleolus of interphase cells and the periphery of chromosomes in mitotic cells which show maximum P2P-R immunoreactivity". Journal of Cellular Physiology. 191 (2): 145–54. doi:10.1002/jcp.10084. PMID   12064457. S2CID   25240477.
• Colland F, Jacq X, Trouplin V, Mougin C, Groizeleau C, Hamburger A, Meil A, Wojcik J, Legrain P, Gauthier JM (Jul 2004). "Functional proteomics mapping of a human signaling pathway". Genome Research. 14 (7): 1324–32. doi:10.1101/gr.2334104. PMC   442148 . PMID   15231748.
• Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villén J, Li J, Cohn MA, Cantley LC, Gygi SP (Aug 2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proceedings of the National Academy of Sciences of the United States of America. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi: 10.1073/pnas.0404720101 . PMC   514446 . PMID   15302935.
• Yoshitake Y, Nakatsura T, Monji M, Senju S, Matsuyoshi H, Tsukamoto H, Hosaka S, Komori H, Fukuma D, Ikuta Y, Katagiri T, Furukawa Y, Ito H, Shinohara M, Nakamura Y, Nishimura Y (Oct 2004). "Proliferation potential-related protein, an ideal esophageal cancer antigen for immunotherapy, identified using complementary DNA microarray analysis". Clinical Cancer Research. 10 (19): 6437–48. doi: 10.1158/1078-0432.CCR-04-0841 . PMID   15475430.
• Scott RE, White-Grindley E, Ruley HE, Chesler EJ, Williams RW (Jul 2005). "P2P-R expression is genetically coregulated with components of the translation machinery and with PUM2, a translational repressor that associates with the P2P-R mRNA". Journal of Cellular Physiology. 204 (1): 99–105. doi:10.1002/jcp.20263. PMID   15617101. S2CID   24888360.
• Beausoleil SA, Villén J, Gerber SA, Rush J, Gygi SP (Oct 2006). "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nature Biotechnology. 24 (10): 1285–92. doi:10.1038/nbt1240. PMID   16964243. S2CID   14294292.
• Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (Nov 2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi: 10.1016/j.cell.2006.09.026 . PMID   17081983. S2CID   7827573.