Y box binding protein 1

Last updated

YBX1
Protein YBX1 PDB 1h95.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases YBX1 , BP-8, CSDA2, CSDB, DBPB, MDR-NF1, NSEP-1, NSEP1, YB-1, YB1, CBF-A, EFI-A, Y-box binding protein 1
External IDs OMIM: 154030; MGI: 99146; HomoloGene: 88707; GeneCards: YBX1; OMA:YBX1 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_004559

NM_011732

RefSeq (protein)

NP_004550

NP_035862

Location (UCSC) Chr 1: 42.68 – 42.7 Mb Chr 4: 119.14 – 119.15 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Y box binding protein 1 also known as Y-box transcription factor or nuclease-sensitive element-binding protein 1 is a protein that in humans is encoded by the YBX1 gene. [5] YBX1 is an RNA binding protein [6] that stabilises messenger RNAs modified with N6-methyladenosine. [7]

Contents

Clinical significance

YBX1 is a potential drug target in cancer therapy. [8] YB-1 helps the replication of adenovirus type 5, a commonly used vector in gene therapy. [8] Thus, YB-1 can cause an "oncolytic" effect in YB-1 positive cancer cells treated with adenoviruses.

Interactions

Y box binding protein 1 has been shown to interact with:

Related Research Articles

<span class="mw-page-title-main">Gene expression</span> Conversion of a genes sequence into a mature gene product or products

Gene expression is the process by which information from a gene is used in the synthesis of a functional gene product that enables it to produce end products, proteins or non-coding RNA, and ultimately affect a phenotype. These products are often proteins, but in non-protein-coding genes such as transfer RNA (tRNA) and small nuclear RNA (snRNA), the product is a functional non-coding RNA. The process of gene expression is used by all known life—eukaryotes, prokaryotes, and utilized by viruses—to generate the macromolecular machinery for life.

A regulatory sequence is a segment of a nucleic acid molecule which is capable of increasing or decreasing the expression of specific genes within an organism. Regulation of gene expression is an essential feature of all living organisms and viruses.

In molecular biology and genetics, transcriptional regulation is the means by which a cell regulates the conversion of DNA to RNA (transcription), thereby orchestrating gene activity. A single gene can be regulated in a range of ways, from altering the number of copies of RNA that are transcribed, to the temporal control of when the gene is transcribed. This control allows the cell or organism to respond to a variety of intra- and extracellular signals and thus mount a response. Some examples of this include producing the mRNA that encode enzymes to adapt to a change in a food source, producing the gene products involved in cell cycle specific activities, and producing the gene products responsible for cellular differentiation in multicellular eukaryotes, as studied in evolutionary developmental biology.

<span class="mw-page-title-main">TATA-binding protein</span> Protein-coding gene in the species Homo sapiens

The TATA-binding protein (TBP) is a general transcription factor that binds to a DNA sequence called the TATA box. This DNA sequence is found about 30 base pairs upstream of the transcription start site in some eukaryotic gene promoters.

<span class="mw-page-title-main">Transcription factor Sp1</span> Protein-coding gene in the species Homo sapiens

Transcription factor Sp1, also known as specificity protein 1* is a protein that in humans is encoded by the SP1 gene.

<span class="mw-page-title-main">CTCF</span> Transcription factor

Transcriptional repressor CTCF also known as 11-zinc finger protein or CCCTC-binding factor is a transcription factor that in humans is encoded by the CTCF gene. CTCF is involved in many cellular processes, including transcriptional regulation, insulator activity, V(D)J recombination and regulation of chromatin architecture.

<span class="mw-page-title-main">HMGA2</span> Protein-coding gene in the species Homo sapiens

High-mobility group AT-hook 2, also known as HMGA2, is a protein that, in humans, is encoded by the HMGA2 gene.

<span class="mw-page-title-main">Lymphoid enhancer-binding factor 1</span> Protein-coding gene in the species Homo sapiens

Lymphoid enhancer-binding factor 1 (LEF1) is a protein that in humans is encoded by the LEF1 gene. It is a member of T cell factor/lymphoid enhancer factor (TCF/LEF) family.

<span class="mw-page-title-main">NFYA</span> Protein-coding gene in the species Homo sapiens

Nuclear transcription factor Y subunit alpha is a protein that in humans is encoded by the NFYA gene.

<span class="mw-page-title-main">NFYB</span> Protein-coding gene in the species Homo sapiens

Nuclear transcription factor Y subunit beta is a protein that in humans is encoded by the NFYB gene.

<span class="mw-page-title-main">DNA polymerase beta</span> Protein-coding gene in the species Homo sapiens

DNA polymerase beta, also known as POLB, is an enzyme present in eukaryotes. In humans, it is encoded by the POLB gene.

<span class="mw-page-title-main">UBTF</span> Protein-coding gene in the species Homo sapiens

Upstream binding transcription factor (UBTF), or upstream binding factor (UBF), is a protein that in humans is encoded by the UBTF gene.

<span class="mw-page-title-main">SFRS9</span> Protein-coding gene in the species Homo sapiens

Splicing factor, arginine/serine-rich 9, also known as SFRS9, is a human gene encoding an SR protein involved in splice site selection in alternative splicing.

<span class="mw-page-title-main">NFYC</span> Protein-coding gene in the species Homo sapiens

Nuclear transcription factor Y subunit gamma is a protein that in humans is encoded by the NFYC gene.

<i>CSDA</i> (gene) Protein-coding gene in humans

DNA-binding protein A is a protein that in humans is encoded by the CSDA gene.

<span class="mw-page-title-main">GTF3A</span> Protein-coding gene in the species Homo sapiens

Transcription factor IIIA is a protein that in humans is encoded by the GTF3A gene.

<span class="mw-page-title-main">RFX4</span> Protein-coding gene in the species Homo sapiens

Transcription factor RFX4 is a protein that in humans is encoded by the RFX4 gene.

<span class="mw-page-title-main">ZNF143</span> Protein-coding gene

Zinc finger protein 143 is a protein that in humans is encoded by the ZNF143 gene.

<span class="mw-page-title-main">Transcription factor IIIB 50 kDa subunit</span> Protein-coding gene in the species Homo sapiens

Transcription factor IIIB 50 kDa subunit (TFIIIB50) also known as b-related factor 2 (BRF-2) is a protein that in humans is encoded by the BRF2 gene.

<span class="mw-page-title-main">FOXA3</span> Protein-coding gene in the species Homo sapiens

Hepatocyte nuclear factor 3-gamma (HNF-3G), also known as forkhead box protein A3 (FOXA3) or transcription factor 3G (TCF-3G) is a protein that in humans is encoded by the FOXA3 gene.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000065978 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000028639 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. EntrezGene 4904 YBX1 Y-box binding protein 1
  6. Kwon E, Todorova K, Wang J, Horos R, Lee KK, Neel VA, et al. (April 2018). "The RNA-binding protein YBX1 regulates epidermal progenitors at a posttranscriptional level". Nature Communications. 9 (1): 1734. Bibcode:2018NatCo...9.1734K. doi:10.1038/s41467-018-04092-0. PMC   5928080 . PMID   29712925.
  7. Feng M, Xie X, Han G, Zhang T, Li Y, Li Y, et al. (July 2021). "YBX1 is required for maintaining myeloid leukemia cell survival by regulating BCL2 stability in an m6A-dependent manner". Blood. 138 (1): 71–85. doi:10.1182/blood.2020009676. PMC   8667054 . PMID   33763698.
  8. 1 2 Lage H, Surowiak P, Holm PS (November 2008). "[YB-1 as a potential target in cancer therapy]". Der Pathologe (in German). 29 (Suppl 2): 187–190. doi: 10.1007/s00292-008-1030-2 . PMID   18773210.
  9. 1 2 Kojic S, Medeot E, Guccione E, Krmac H, Zara I, Martinelli V, et al. (May 2004). "The Ankrd2 protein, a link between the sarcomere and the nucleus in skeletal muscle". Journal of Molecular Biology. 339 (2): 313–325. doi:10.1016/j.jmb.2004.03.071. PMID   15136035.
  10. Chernukhin IV, Shamsuddin S, Robinson AF, Carne AF, Paul A, El-Kady AI, et al. (September 2000). "Physical and functional interaction between two pluripotent proteins, the Y-box DNA/RNA-binding factor, YB-1, and the multivalent zinc finger factor, CTCF". The Journal of Biological Chemistry. 275 (38): 29915–29921. doi: 10.1074/jbc.M001538200 . PMID   10906122.
  11. Okamoto T, Izumi H, Imamura T, Takano H, Ise T, Uchiumi T, et al. (December 2000). "Direct interaction of p53 with the Y-box binding protein, YB-1: a mechanism for regulation of human gene expression". Oncogene. 19 (54): 6194–6202. doi: 10.1038/sj.onc.1204029 . PMID   11175333.
  12. Ise T, Nagatani G, Imamura T, Kato K, Takano H, Nomoto M, et al. (January 1999). "Transcription factor Y-box binding protein 1 binds preferentially to cisplatin-modified DNA and interacts with proliferating cell nuclear antigen". Cancer Research. 59 (2): 342–346. PMID   9927044.
  13. Chibi M, Meyer M, Skepu A, G Rees DJ, Moolman-Smook JC, Pugh DJ (December 2008). "RBBP6 interacts with multifunctional protein YB-1 through its RING finger domain, leading to ubiquitination and proteosomal degradation of YB-1". Journal of Molecular Biology. 384 (4): 908–916. doi:10.1016/j.jmb.2008.09.060. PMID   18851979.
  14. Raffetseder U, Frye B, Rauen T, Jürchott K, Royer HD, Jansen PL, et al. (May 2003). "Splicing factor SRp30c interaction with Y-box protein-1 confers nuclear YB-1 shuttling and alternative splice site selection". The Journal of Biological Chemistry. 278 (20): 18241–18248. doi: 10.1074/jbc.M212518200 . PMID   12604611.

Further reading

This article incorporates text from the United States National Library of Medicine, which is in the public domain.