SALL1

SALL1
Identifiers
Aliases	SALL1 , HEL-S-89, HSAL1, Sal-1, TBS, ZNF794, spalt-like transcription factor 1, spalt like transcription factor 1
External IDs	OMIM: 602218; MGI: 1889585; HomoloGene: 2230; GeneCards: SALL1; OMA:SALL1 - orthologs
Gene location (Human) Chr. Chromosome 16 (human) [1] Band 16q12.1 Start 51,135,982 bp [1] End 51,152,334 bp [1]
Gene location (Mouse) Chr. Chromosome 8 (mouse) [2] Band 8|8 C3 Start 89,753,863 bp [2] End 89,770,790 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in ventricular zone inferior ganglion of vagus nerve renal medulla subthalamic nucleus superior vestibular nucleus ganglionic eminence internal globus pallidus stromal cell of endometrium right lobe of liver spinal cord Top expressed in pineal gland tail of embryo ventricular zone decidua Rostral migratory stream epiblast olfactory bulb primitive streak renal corpuscle gastrula More reference expression data BioGPS More reference expression data
Gene ontology Molecular function DNA binding sequence-specific DNA binding beta-catenin binding histone deacetylase activity DNA-binding transcription factor activity metal ion binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription repressor activity, RNA polymerase II-specific protein binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific Cellular component cytoplasm NuRD complex nucleoplasm heterochromatin chromocenter nucleus Biological process neurogenesis ureteric bud development pituitary gland development kidney epithelium development inductive cell-cell signaling regulation of transcription, DNA-templated olfactory bulb mitral cell layer development ventricular septum development olfactory bulb interneuron differentiation somatic stem cell population maintenance kidney development embryonic digit morphogenesis mesenchymal to epithelial transition involved in metanephros morphogenesis outer ear morphogenesis olfactory nerve development negative regulation of transcription by RNA polymerase II adrenal gland development ureteric bud invasion transcription, DNA-templated limb development positive regulation of Wnt signaling pathway positive regulation of transcription, DNA-templated development of the heart branching involved in ureteric bud morphogenesis negative regulation of transcription, DNA-templated gonad development embryonic digestive tract development positive regulation of transcription by RNA polymerase II histone deacetylation Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 6299 58198 Ensembl ENSG00000103449 ENSMUSG00000031665 UniProt Q9NSC2 Q9ER74 Q6P5E3 RefSeq (mRNA) NM_001127892 NM_002968 NM_021390 NM_001371069 NM_001371070 RefSeq (protein) NP_001121364 NP_002959 NP_067365 NP_001357998 NP_001357999 Location (UCSC) Chr 16: 51.14 – 51.15 Mb Chr 8: 89.75 – 89.77 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Sal-like 1 (Drosophila), also known as SALL1, is a protein which in humans is encoded by the SALL1 gene. ^{[5] [6]} As the full name suggests, it is one of the human versions of the spalt (sal) gene known in Drosophila .

Function

The protein encoded by this gene is a zinc finger transcriptional repressor and may be part of the NuRD histone deacetylase (HDAC) complex. ^[5]

Clinical significance

Defects in this gene are a cause of Townes–Brocks syndrome (TBS) as well as branchio-oto-renal syndrome (BOR). Two transcript variants encoding different isoforms have been found for this gene. ^[5]

Interactions

SALL1 has been shown to interact with TERF1 ^[7] and UBE2I. ^[8]

References

1. GRCh38: Ensembl release 89: ENSG00000103449 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000031665 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: SALL1 sal-like 1 (Drosophila)".
6. Kohlhase J, Wischermann A, Reichenbach H, Froster U, Engel W (Jan 1998). "Mutations in the SALL1 putative transcription factor gene cause Townes-Brocks syndrome". Nature Genetics. 18 (1): 81–3. doi:10.1038/ng0198-81. PMID   9425907. S2CID   20982906.
7. Netzer C, Rieger L, Brero A, Zhang CD, Hinzke M, Kohlhase J, Bohlander SK (Dec 2001). "SALL1, the gene mutated in Townes-Brocks syndrome, encodes a transcriptional repressor which interacts with TRF1/PIN2 and localizes to pericentromeric heterochromatin". Human Molecular Genetics. 10 (26): 3017–24. doi: 10.1093/hmg/10.26.3017 . PMID   11751684.
8. Netzer C, Bohlander SK, Rieger L, Müller S, Kohlhase J (Aug 2002). "Interaction of the developmental regulator SALL1 with UBE2I and SUMO-1". Biochemical and Biophysical Research Communications. 296 (4): 870–6. Bibcode:2002BBRC..296..870N. doi:10.1016/S0006-291X(02)02003-X. PMID   12200128.

External links

• GeneReviews/NCBI/NIH/UW entry on Townes-Brocks Syndrome

Further reading

• Nishinakamura R, Takasato M (Nov 2005). "Essential roles of Sall1 in kidney development". Kidney International. 68 (5): 1948–50. doi: 10.1111/j.1523-1755.2005.00626.x . PMID   16221172.
• Sweetman D, Münsterberg A (May 2006). "The vertebrate spalt genes in development and disease" (PDF). Developmental Biology. 293 (2): 285–93. doi:10.1016/j.ydbio.2006.02.009. PMID   16545361. S2CID   45268563.
• Li Q, Lan X, Han X, Wang J (January 2019). "Expression of Tmem119/Sall1 and Ccr2/CD69 in FACS-Sorted Microglia- and Monocyte/Macrophage-Enriched Cell Populations After Intracerebral Hemorrhage". Front Cell Neurosci. 12 520. doi: 10.3389/fncel.2018.00520 . PMC   6333739 . PMID   30687011.
• Kohlhase J, Schuh R, Dowe G, Kühnlein RP, Jäckle H, Schroeder B, Schulz-Schaeffer W, Kretzschmar HA, Köhler A, Müller U, Raab-Vetter M, Burkhardt E, Engel W, Stick R (Dec 1996). "Isolation, characterization, and organ-specific expression of two novel human zinc finger genes related to the Drosophila gene spalt". Genomics. 38 (3): 291–8. doi:10.1006/geno.1996.0631. PMID   8975705.
• Kohlhase J, Wischermann A, Reichenbach H, Froster U, Engel W (Jan 1998). "Mutations in the SALL1 putative transcription factor gene cause Townes-Brocks syndrome". Nature Genetics. 18 (1): 81–3. doi:10.1038/ng0198-81. PMID   9425907. S2CID   20982906.
• Kohlhase J, Taschner PE, Burfeind P, Pasche B, Newman B, Blanck C, Breuning MH, ten Kate LP, Maaswinkel-Mooy P, Mitulla B, Seidel J, Kirkpatrick SJ, Pauli RM, Wargowski DS, Devriendt K, Proesmans W, Gabrielli O, Coppa GV, Wesby-van Swaay E, Trembath RC, Schinzel AA, Reardon W, Seemanova E, Engel W (Feb 1999). "Molecular analysis of SALL1 mutations in Townes-Brocks syndrome". American Journal of Human Genetics. 64 (2): 435–45. doi:10.1086/302238. PMC   1377753 . PMID   9973281.
• Marlin S, Blanchard S, Slim R, Lacombe D, Denoyelle F, Alessandri JL, Calzolari E, Drouin-Garraud V, Ferraz FG, Fourmaintraux A, Philip N, Toublanc JE, Petit C (2000). "Townes-Brocks syndrome: detection of a SALL1 mutation hot spot and evidence for a position effect in one patient". Human Mutation. 14 (5): 377–86. doi:10.1002/(SICI)1098-1004(199911)14:5<377::AID-HUMU3>3.0.CO;2-A. PMID   10533063. S2CID   21828589.
• Engels S, Kohlhase J, McGaughran J (Jun 2000). "A SALL1 mutation causes a branchio-oto-renal syndrome-like phenotype". Journal of Medical Genetics. 37 (6): 458–60. doi:10.1136/jmg.37.6.458. PMC   1734618 . PMID   10928856.
• Buck A, Archangelo L, Dixkens C, Kohlhase J (2000). "Molecular cloning, chromosomal localization, and expression of the murine SALL1 ortholog Sall1". Cytogenetics and Cell Genetics. 89 (3–4): 150–3. doi:10.1159/000015598. PMID   10965108. S2CID   32069113.
• Surka WS, Kohlhase J, Neunert CE, Schneider DS, Proud VK (Aug 2001). "Unique family with Townes-Brocks syndrome, SALL1 mutation, and cardiac defects". American Journal of Medical Genetics. 102 (3): 250–7. doi:10.1002/1096-8628(20010815)102:3<250::AID-AJMG1479>3.0.CO;2-Q. PMID   11484202.
• Netzer C, Rieger L, Brero A, Zhang CD, Hinzke M, Kohlhase J, Bohlander SK (Dec 2001). "SALL1, the gene mutated in Townes-Brocks syndrome, encodes a transcriptional repressor which interacts with TRF1/PIN2 and localizes to pericentromeric heterochromatin". Human Molecular Genetics. 10 (26): 3017–24. doi: 10.1093/hmg/10.26.3017 . PMID   11751684.
• Kiefer SM, McDill BW, Yang J, Rauchman M (Apr 2002). "Murine Sall1 represses transcription by recruiting a histone deacetylase complex". The Journal of Biological Chemistry. 277 (17): 14869–76. doi: 10.1074/jbc.M200052200 . PMID   11836251.
• Ma Y, Chai L, Cortez SC, Stopa EG, Steinhoff MM, Ford D, Morgan J, Maizel AL (Jun 2002). "SALL1 expression in the human pituitary-adrenal/gonadal axis". The Journal of Endocrinology. 173 (3): 437–48. CiteSeerX   10.1.1.482.5096 . doi:10.1677/joe.0.1730437. PMID   12065233.
• Netzer C, Bohlander SK, Rieger L, Müller S, Kohlhase J (Aug 2002). "Interaction of the developmental regulator SALL1 with UBE2I and SUMO-1". Biochemical and Biophysical Research Communications. 296 (4): 870–6. Bibcode:2002BBRC..296..870N. doi:10.1016/S0006-291X(02)02003-X. PMID   12200128.
• Sato A, Kishida S, Tanaka T, Kikuchi A, Kodama T, Asashima M, Nishinakamura R (Jun 2004). "Sall1, a causative gene for Townes-Brocks syndrome, enhances the canonical Wnt signaling by localizing to heterochromatin". Biochemical and Biophysical Research Communications. 319 (1): 103–13. Bibcode:2004BBRC..319..103S. doi:10.1016/j.bbrc.2004.04.156. PMID   15158448.
• Suzuki Y, Yamashita R, Shirota M, Sakakibara Y, Chiba J, Mizushima-Sugano J, Nakai K, Sugano S (Sep 2004). "Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions". Genome Research. 14 (9): 1711–8. doi:10.1101/gr.2435604. PMC   515316 . PMID   15342556.
• Botzenhart EM, Green A, Ilyina H, König R, Lowry RB, Lo IF, Shohat M, Burke L, McGaughran J, Chafai R, Pierquin G, Michaelis RC, Whiteford ML, Simola KO, Rösler B, Kohlhase J (Sep 2005). "SALL1 mutation analysis in Townes-Brocks syndrome: twelve novel mutations and expansion of the phenotype". Human Mutation. 26 (3): 282. doi:10.1002/humu.9362. PMID   16088922. S2CID   26907877.
• Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, Yamashita R, Yamamoto J, Sekine M, Tsuritani K, Wakaguri H, Ishii S, Sugiyama T, Saito K, Isono Y, Irie R, Kushida N, Yoneyama T, Otsuka R, Kanda K, Yokoi T, Kondo H, Wagatsuma M, Murakawa K, Ishida S, Ishibashi T, Takahashi-Fujii A, Tanase T, Nagai K, Kikuchi H, Nakai K, Isogai T, Sugano S (Jan 2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes". Genome Research. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC   1356129 . PMID   16344560.
• Borozdin W, Steinmann K, Albrecht B, Bottani A, Devriendt K, Leipoldt M, Kohlhase J (Feb 2006). "Detection of heterozygous SALL1 deletions by quantitative real time PCR proves the contribution of a SALL1 dosage effect in the pathogenesis of Townes-Brocks syndrome". Human Mutation. 27 (2): 211–2. doi: 10.1002/humu.9396 . PMID   16429401. S2CID   33751966.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.