CEBPE

CEBPE
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 3T92
Identifiers
Aliases	CEBPE , C/EBP-epsilon, CRP1, CCAAT/enhancer binding protein epsilon, CCAAT enhancer binding protein epsilon, c/EBP epsilon
External IDs	OMIM: 600749; MGI: 103572; HomoloGene: 1367; GeneCards: CEBPE; OMA:CEBPE - orthologs
Gene location (Human) Chr. Chromosome 14 (human) [1] Band 14q11.2 Start 23,117,036 bp [1] End 23,120,256 bp [1]
Gene location (Mouse) Chr. Chromosome 14 (mouse) [2] Band 14 C2|14 27.9 cM Start 54,947,817 bp [2] End 54,949,631 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in bone marrow trabecular bone bone marrow cells gonad blood monocyte granulocyte vena cava spleen duodenum Top expressed in granulocyte bone marrow embryo liver jejunum ileum spleen lip quadriceps femoris muscle colon More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein heterodimerization activity DNA-binding transcription factor activity RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA binding DNA-binding transcription activator activity, RNA polymerase II-specific protein homodimerization activity protein binding DNA-binding transcription factor activity, RNA polymerase II-specific Cellular component nucleoplasm nucleus Biological process defense response myeloid cell differentiation positive regulation of gene expression cellular response to lipopolysaccharide regulation of transcription, DNA-templated defense response to bacterium transcription, DNA-templated positive regulation of transcription by RNA polymerase II macrophage differentiation phagocytosis transcription by RNA polymerase II granulocyte differentiation Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 1053 110794 Ensembl ENSG00000092067 ENSMUSG00000052435 UniProt Q15744 Q6PZD9 RefSeq (mRNA) NM_001805 NM_207131 RefSeq (protein) NP_001796 NP_997014 Location (UCSC) Chr 14: 23.12 – 23.12 Mb Chr 14: 54.95 – 54.95 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

CCAAT/enhancer binding protein (C/EBP), epsilon, also known as CEBPE and CRP1, is a type of ccaat-enhancer-binding protein. CEBPE is its human gene ^{[5] [6]} and is pro-apoptotic. ^[7]

The protein encoded by this gene is a bZIP transcription factor which can bind as a homodimer to certain DNA regulatory regions. It can also form heterodimers with the related protein CEBP-δ. The encoded protein may be essential for terminal differentiation and functional maturation of committed granulocyte progenitor cells. Mutations in this gene have been associated with specific granule deficiency, a rare congenital disorder. Multiple variants of this gene have been described, but the full-length nature of only one has been determined. ^[5]

References

1. GRCh38: Ensembl release 89: ENSG00000092067 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000052435 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon".
6. Antonson P, Stellan B, Yamanaka R, Xanthopoulos KG (Jul 1996). "A novel human CCAAT/enhancer binding protein gene, C/EBPepsilon, is expressed in cells of lymphoid and myeloid lineages and is localized on chromosome 14q11.2 close to the T-cell receptor alpha/delta locus". Genomics. 35 (1): 30–8. doi:10.1006/geno.1996.0319. PMID   8661101.
7. Nakajima H, Watanabe N, Shibata F, Kitamura T, Ikeda Y, Handa M (May 2006). "N-terminal region of CCAAT/enhancer-binding protein epsilon is critical for cell cycle arrest, apoptosis, and functional maturation during myeloid differentiation". The Journal of Biological Chemistry. 281 (20): 14494–502. doi: 10.1074/jbc.M600575200 . PMID   16531405.

Further reading

• Sladek FM, Darnell JE (Apr 1992). "Mechanisms of liver-specific gene expression". Current Opinion in Genetics & Development. 2 (2): 256–9. doi:10.1016/S0959-437X(05)80282-5. PMID   1638120.
• Gombart AF, Koeffler HP (Jan 2002). "Neutrophil specific granule deficiency and mutations in the gene encoding transcription factor C/EBP(epsilon)". Current Opinion in Hematology. 9 (1): 36–42. doi:10.1097/00062752-200201000-00007. PMID   11753076. S2CID   25411864.
• Williams SC, Cantwell CA, Johnson PF (Sep 1991). "A family of C/EBP-related proteins capable of forming covalently linked leucine zipper dimers in vitro". Genes & Development. 5 (9): 1553–67. doi: 10.1101/gad.5.9.1553 . PMID   1884998.
• Antonson P, Stellan B, Yamanaka R, Xanthopoulos KG (Jul 1996). "A novel human CCAAT/enhancer binding protein gene, C/EBPepsilon, is expressed in cells of lymphoid and myeloid lineages and is localized on chromosome 14q11.2 close to the T-cell receptor alpha/delta locus". Genomics. 35 (1): 30–8. doi:10.1006/geno.1996.0319. PMID   8661101.
• Chumakov AM, Grillier I, Chumakova E, Chih D, Slater J, Koeffler HP (Mar 1997). "Cloning of the novel human myeloid-cell-specific C/EBP-epsilon transcription factor". Molecular and Cellular Biology. 17 (3): 1375–86. doi:10.1128/mcb.17.3.1375. PMC   231862 . PMID   9032264.
• Yamanaka R, Kim GD, Radomska HS, Lekstrom-Himes J, Smith LT, Antonson P, Tenen DG, Xanthopoulos KG (Jun 1997). "CCAAT/enhancer binding protein epsilon is preferentially up-regulated during granulocytic differentiation and its functional versatility is determined by alternative use of promoters and differential splicing". Proceedings of the National Academy of Sciences of the United States of America. 94 (12): 6462–7. doi: 10.1073/pnas.94.12.6462 . PMC   21072 . PMID   9177240.
• Verbeek W, Gombart AF, Chumakov AM, Müller C, Friedman AD, Koeffler HP (May 1999). "C/EBPepsilon directly interacts with the DNA binding domain of c-myb and cooperatively activates transcription of myeloid promoters". Blood. 93 (10): 3327–37. doi: 10.1182/blood.V93.10.3327 . PMID   10233885.
• Lekstrom-Himes JA, Dorman SE, Kopar P, Holland SM, Gallin JI (Jun 1999). "Neutrophil-specific granule deficiency results from a novel mutation with loss of function of the transcription factor CCAAT/enhancer binding protein epsilon". The Journal of Experimental Medicine. 189 (11): 1847–52. doi:10.1084/jem.189.11.1847. PMC   2193089 . PMID   10359588.
• Tavor S, Vuong PT, Park DJ, Gombart AF, Cohen AH, Koeffler HP (Mar 2002). "Macrophage functional maturation and cytokine production are impaired in C/EBP epsilon-deficient mice". Blood. 99 (5): 1794–801. doi: 10.1182/blood.V99.5.1794 . PMID   11861297.
• Zhang P, Nelson E, Radomska HS, Iwasaki-Arai J, Akashi K, Friedman AD, Tenen DG (Jun 2002). "Induction of granulocytic differentiation by 2 pathways". Blood. 99 (12): 4406–12. doi: 10.1182/blood.V99.12.4406 . PMID   12036869.
• Kim J, Cantwell CA, Johnson PF, Pfarr CM, Williams SC (Oct 2002). "Transcriptional activity of CCAAT/enhancer-binding proteins is controlled by a conserved inhibitory domain that is a target for sumoylation". The Journal of Biological Chemistry. 277 (41): 38037–44. doi: 10.1074/jbc.M207235200 . PMID   12161447.
• Du J, Stankiewicz MJ, Liu Y, Xi Q, Schmitz JE, Lekstrom-Himes JA, Ackerman SJ (Nov 2002). "Novel combinatorial interactions of GATA-1, PU.1, and C/EBPepsilon isoforms regulate transcription of the gene encoding eosinophil granule major basic protein". The Journal of Biological Chemistry. 277 (45): 43481–94. doi: 10.1074/jbc.M204777200 . PMID   12202480.
• Truong BT, Lee YJ, Lodie TA, Park DJ, Perrotti D, Watanabe N, Koeffler HP, Nakajima H, Tenen DG, Kogan SC (Feb 2003). "CCAAT/Enhancer binding proteins repress the leukemic phenotype of acute myeloid leukemia". Blood. 101 (3): 1141–8. doi:10.1182/blood-2002-05-1374. PMID   12393450.
• Gombart AF, Kwok SH, Anderson KL, Yamaguchi Y, Torbett BE, Koeffler HP (Apr 2003). "Regulation of neutrophil and eosinophil secondary granule gene expression by transcription factors C/EBP epsilon and PU.1". Blood. 101 (8): 3265–73. doi: 10.1182/blood-2002-04-1039 . PMID   12515729.
• Khanna-Gupta A, Zibello T, Sun H, Gaines P, Berliner N (May 2003). "Chromatin immunoprecipitation (ChIP) studies indicate a role for CCAAT enhancer binding proteins alpha and epsilon (C/EBP alpha and C/EBP epsilon ) and CDP/cut in myeloid maturation-induced lactoferrin gene expression". Blood. 101 (9): 3460–8. doi: 10.1182/blood-2002-09-2767 . PMID   12522000.
• Gery S, Gombart AF, Fung YK, Koeffler HP (Feb 2004). "C/EBPepsilon interacts with retinoblastoma and E2F1 during granulopoiesis". Blood. 103 (3): 828–35. doi:10.1182/blood-2003-01-0159. PMID   12947005.
• Gery S, Park DJ, Vuong PT, Chih DY, Lemp N, Koeffler HP (Dec 2004). "Retinoic acid regulates C/EBP homologous protein expression (CHOP), which negatively regulates myeloid target genes". Blood. 104 (13): 3911–7. doi: 10.1182/blood-2003-10-3688 . PMID   15308577.

External links

• CEBPE protein, human at the U.S. National Library of Medicine Medical Subject Headings (MeSH)
• Human CEBPE genome location and CEBPE gene details page in the UCSC Genome Browser .

This article incorporates text from the United States National Library of Medicine, which is in the public domain.