GTF2F1

GTF2F1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1F3U, 1I27, 1J2X, 1NHA, 1ONV, 2K7L, 5IY9, 5IYA, 5IYC, 5IYB, 5IY7, 5IY8, 5IYD, 5IY6
Identifiers
Aliases	GTF2F1 , general transcription factor IIF, polypeptide 1, 74kDa, BTF4, RAP74, TF2F1, TFIIF, general transcription factor IIF subunit 1
External IDs	OMIM: 189968 MGI: 1923848 HomoloGene: 1585 GeneCards: GTF2F1
Gene location (Human) Chr. Chromosome 19 (human) [1] Band 19p13.3 Start 6,379,572 bp [1] End 6,393,981 bp [1]
Gene location (Mouse) Chr. Chromosome 17 (mouse) [2] Band 17|17 D Start 57,310,405 bp [2] End 57,318,288 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in cerebellum cerebellar cortex cerebellar hemisphere prefrontal cortex anterior pituitary superior frontal gyrus sural nerve body of pancreas ganglionic eminence dorsolateral prefrontal cortex Top expressed in saccule otic placode seminiferous tubule primitive streak yolk sac motor neuron supraoptic nucleus Paneth cell mirror hair follicle More reference expression data BioGPS n/a
Gene ontology Molecular function DNA binding transcription coactivator activity transcription factor binding protein binding phosphatase activator activity RNA binding protein phosphatase binding protein domain specific binding RNA polymerase II general transcription initiation factor activity promoter-specific chromatin binding Cellular component intracellular membrane-bounded organelle nucleoplasm transcription factor TFIIF complex cell junction transcription factor TFIID complex nucleus protein-containing complex Biological process mRNA splicing, via spliceosome regulation of transcription, DNA-templated transcription elongation from RNA polymerase II promoter response to virus 7-methylguanosine mRNA capping transcription by RNA polymerase II transcription, DNA-templated positive regulation of viral transcription transcription initiation from RNA polymerase II promoter positive regulation of transcription elongation from RNA polymerase II promoter positive regulation of transcription by RNA polymerase II snRNA transcription by RNA polymerase II fibroblast growth factor receptor signaling pathway positive regulation of catalytic activity RNA metabolic process negative regulation of protein binding Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 2962 98053 Ensembl ENSG00000125651 ENSMUSG00000002658 UniProt P35269 Q3THK3 RefSeq (mRNA) NM_002096 NM_133801 RefSeq (protein) NP_002087 NP_598562 Location (UCSC) Chr 19: 6.38 – 6.39 Mb Chr 17: 57.31 – 57.32 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

General transcription factor IIF subunit 1 is a protein that in humans is encoded by the GTF2F1 gene. ^{[5] [6]}

Interactions

GTF2F1 has been shown to interact with:

• CTDP1, ^[7]
• GTF2H4, ^[8]
• HNRPU, ^[9]
• MED21, ^{[8] [10]}
• POLR2A, ^{[8] [11]}
• Serum response factor ^{[12] [13]}
• TAF11, ^[8]
• TAF1, ^{[14] [15] [16] [17]}
• TATA binding protein, ^{[8] [15] [17]} and
• Transcription Factor II B. ^{[8] [18]}

See also

• Transcription factor II F

References

1. GRCh38: Ensembl release 89: ENSG00000125651 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000002658 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Finkelstein A, Kostrub CF, Li J, Chavez DP, Wang BQ, Fang SM, Greenblatt J, Burton ZF (March 1992). "A cDNA encoding RAP74, a general initiation factor for transcription by RNA polymerase II". Nature. 355 (6359): 464–7. Bibcode:1992Natur.355..464F. doi:10.1038/355464a0. PMID   1734284. S2CID   1241044.
6. "Entrez Gene: GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa".
7. Archambault J, Pan G, Dahmus GK, Cartier M, Marshall N, Zhang S, Dahmus ME, Greenblatt J (October 1998). "FCP1, the RAP74-interacting subunit of a human protein phosphatase that dephosphorylates the carboxyl-terminal domain of RNA polymerase IIO". J. Biol. Chem. 273 (42): 27593–601. doi: 10.1074/jbc.273.42.27593 . PMID   9765293.
8. Scully R, Anderson SF, Chao DM, Wei W, Ye L, Young RA, Livingston DM, Parvin JD (May 1997). "BRCA1 is a component of the RNA polymerase II holoenzyme". Proc. Natl. Acad. Sci. U.S.A. 94 (11): 5605–10. Bibcode:1997PNAS...94.5605S. doi: 10.1073/pnas.94.11.5605 . PMC   20825 . PMID   9159119.
9. Kim MK, Nikodem VM (October 1999). "hnRNP U inhibits carboxy-terminal domain phosphorylation by TFIIH and represses RNA polymerase II elongation". Mol. Cell. Biol. 19 (10): 6833–44. doi:10.1128/MCB.19.10.6833. PMC   84680 . PMID   10490622.
10. Suñé C, Hayashi T, Liu Y, Lane WS, Young RA, Garcia-Blanco MA (October 1997). "CA150, a nuclear protein associated with the RNA polymerase II holoenzyme, is involved in Tat-activated human immunodeficiency virus type 1 transcription". Mol. Cell. Biol. 17 (10): 6029–39. doi:10.1128/MCB.17.10.6029. PMC   232452 . PMID   9315662.
11. Cho H, Orphanides G, Sun X, Yang XJ, Ogryzko V, Lees E, Nakatani Y, Reinberg D (September 1998). "A human RNA polymerase II complex containing factors that modify chromatin structure". Mol. Cell. Biol. 18 (9): 5355–63. doi:10.1128/MCB.18.9.5355. PMC   109120 . PMID   9710619.
12. Joliot V, Demma M, Prywes R (February 1995). "Interaction with RAP74 subunit of TFIIF is required for transcriptional activation by serum response factor". Nature. 373 (6515): 632–5. Bibcode:1995Natur.373..632J. doi:10.1038/373632a0. PMID   7854423. S2CID   47196160.
13. Zhu H, Joliot V, Prywes R (February 1994). "Role of transcription factor TFIIF in serum response factor-activated transcription". J. Biol. Chem. 269 (5): 3489–97. doi: 10.1016/S0021-9258(17)41889-8 . PMID   8106390.
14. Dikstein R, Ruppert S, Tjian R (March 1996). "TAFII250 is a bipartite protein kinase that phosphorylates the base transcription factor RAP74". Cell. 84 (5): 781–90. doi: 10.1016/s0092-8674(00)81055-7 . PMID   8625415. S2CID   18490534.
15. Ruppert S, Tjian R (November 1995). "Human TAFII250 interacts with RAP74: implications for RNA polymerase II initiation". Genes Dev. 9 (22): 2747–55. doi: 10.1101/gad.9.22.2747 . PMID   7590250.
16. Siegert JL, Robbins PD (January 1999). "Rb inhibits the intrinsic kinase activity of TATA-binding protein-associated factor TAFII250". Mol. Cell. Biol. 19 (1): 846–54. doi:10.1128/MCB.19.1.846. PMC   83941 . PMID   9858607.
17. Malik S, Guermah M, Roeder RG (March 1998). "A dynamic model for PC4 coactivator function in RNA polymerase II transcription". Proc. Natl. Acad. Sci. U.S.A. 95 (5): 2192–7. Bibcode:1998PNAS...95.2192M. doi: 10.1073/pnas.95.5.2192 . PMC   19292 . PMID   9482861.
18. Fang SM, Burton ZF (May 1996). "RNA polymerase II-associated protein (RAP) 74 binds transcription factor (TF) IIB and blocks TFIIB-RAP30 binding". J. Biol. Chem. 271 (20): 11703–9. doi: 10.1074/jbc.271.20.11703 . PMID   8662660.

Further reading

• Kato H, Sumimoto H, Pognonec P, Chen CH, Rosen CA, Roeder RG (1992). "HIV-1 Tat acts as a processivity factor in vitro in conjunction with cellular elongation factors". Genes Dev. 6 (4): 655–66. doi: 10.1101/gad.6.4.655 . PMID   1559613.
• Aso T, Vasavada HA, Kawaguchi T, Germino FJ, Ganguly S, Kitajima S, Weissman SM, Yasukochi Y (1992). "Characterization of cDNA for the large subunit of the transcription initiation factor TFIIF". Nature. 355 (6359): 461–4. Bibcode:1992Natur.355..461A. doi:10.1038/355461a0. PMID   1734283. S2CID   4312708.
• Adams MD, Kerlavage AR, Fleischmann RD, Fuldner RA, Bult CJ, Lee NH, Kirkness EF, Weinstock KG, Gocayne JD, White O (1995). "Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence". Nature. 377 (6547 Suppl): 3–174. PMID   7566098.
• Ruppert S, Tjian R (1995). "Human TAFII250 interacts with RAP74: implications for RNA polymerase II initiation". Genes Dev. 9 (22): 2747–55. doi: 10.1101/gad.9.22.2747 . PMID   7590250.
• Hisatake K, Ohta T, Takada R, Guermah M, Horikoshi M, Nakatani Y, Roeder RG (1995). "Evolutionary conservation of human TATA-binding-polypeptide-associated factors TAFII31 and TAFII80 and interactions of TAFII80 with other TAFs and with general transcription factors". Proc. Natl. Acad. Sci. U.S.A. 92 (18): 8195–9. Bibcode:1995PNAS...92.8195H. doi: 10.1073/pnas.92.18.8195 . PMC   41123 . PMID   7667268.
• Joliot V, Demma M, Prywes R (1995). "Interaction with RAP74 subunit of TFIIF is required for transcriptional activation by serum response factor". Nature. 373 (6515): 632–5. Bibcode:1995Natur.373..632J. doi:10.1038/373632a0. PMID   7854423. S2CID   47196160.
• Zhu H, Joliot V, Prywes R (1994). "Role of transcription factor TFIIF in serum response factor-activated transcription". J. Biol. Chem. 269 (5): 3489–97. doi: 10.1016/S0021-9258(17)41889-8 . PMID   8106390.
• Yonaha M, Aso T, Kobayashi Y, Vasavada H, Yasukochi Y, Weissman SM, Kitajima S (1993). "Domain structure of a human general transcription initiation factor, TFIIF". Nucleic Acids Res. 21 (2): 273–9. doi:10.1093/nar/21.2.273. PMC   309103 . PMID   8441635.
• Aso T, Tsai P, Kawaguchi T, Menninger JC, Kitajima S, Yasukochi Y, Ward DC, Weissman SM (1993). "Assignment of the human GTF2F1 gene to chromosome 19p13.3". Genomics. 16 (1): 252–3. doi: 10.1006/geno.1993.1168 . PMID   8486367.
• Dikstein R, Ruppert S, Tjian R (1996). "TAFII250 is a bipartite protein kinase that phosphorylates the base transcription factor RAP74". Cell. 84 (5): 781–90. doi: 10.1016/S0092-8674(00)81055-7 . PMID   8625415. S2CID   18490534.
• Fang SM, Burton ZF (1996). "RNA polymerase II-associated protein (RAP) 74 binds transcription factor (TF) IIB and blocks TFIIB-RAP30 binding". J. Biol. Chem. 271 (20): 11703–9. doi: 10.1074/jbc.271.20.11703 . PMID   8662660.
• McEwan IJ, Dahlman-Wright K, Ford J, Wright AP (1996). "Functional interaction of the c-Myc transactivation domain with the TATA binding protein: evidence for an induced fit model of transactivation domain folding". Biochemistry. 35 (29): 9584–93. doi:10.1021/bi960793v. PMID   8755740.
• Zhou Q, Sharp PA (1996). "Tat-SF1: cofactor for stimulation of transcriptional elongation by HIV-1 Tat". Science. 274 (5287): 605–10. Bibcode:1996Sci...274..605Z. doi:10.1126/science.274.5287.605. PMID   8849451. S2CID   13266489.
• Parada CA, Roeder RG (1996). "Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain". Nature. 384 (6607): 375–8. Bibcode:1996Natur.384..375P. doi:10.1038/384375a0. PMID   8934526. S2CID   4278432.
• Cujec TP, Cho H, Maldonado E, Meyer J, Reinberg D, Peterlin BM (1997). "The human immunodeficiency virus transactivator Tat interacts with the RNA polymerase II holoenzyme". Mol. Cell. Biol. 17 (4): 1817–23. doi:10.1128/mcb.17.4.1817. PMC   232028 . PMID   9121429.
• Scully R, Anderson SF, Chao DM, Wei W, Ye L, Young RA, Livingston DM, Parvin JD (1997). "BRCA1 is a component of the RNA polymerase II holoenzyme". Proc. Natl. Acad. Sci. U.S.A. 94 (11): 5605–10. Bibcode:1997PNAS...94.5605S. doi: 10.1073/pnas.94.11.5605 . PMC   20825 . PMID   9159119.
• McEwan IJ, Gustafsson J (1997). "Interaction of the human androgen receptor transactivation function with the general transcription factor TFIIF". Proc. Natl. Acad. Sci. U.S.A. 94 (16): 8485–90. Bibcode:1997PNAS...94.8485M. doi: 10.1073/pnas.94.16.8485 . PMC   22967 . PMID   9238003.
• Newberry EP, Latifi T, Battaile JT, Towler DA (1997). "Structure-function analysis of Msx2-mediated transcriptional suppression". Biochemistry. 36 (34): 10451–62. doi:10.1021/bi971008x. PMID   9265625.
• O'Brien T, Tjian R (1998). "Functional analysis of the human TAFII250 N-terminal kinase domain". Mol. Cell. 1 (6): 905–11. doi: 10.1016/S1097-2765(00)80089-1 . PMID   9660973.

External links

• GTF2F1+protein,+human at the US National Library of Medicine Medical Subject Headings (MeSH)
• FactorBook GTF2F1

This article incorporates text from the United States National Library of Medicine, which is in the public domain.