IFI16

Last updated
IFI16
Protein IFI16 PDB 2oq0.png
Available structures
PDB Human UniProt search: PDBe RCSB
Identifiers
Aliases IFI16 , IFNGIP1, PYHIN2, interferon gamma inducible protein 16
External IDs OMIM: 147586; MGI: 3695276; HomoloGene: 115929; GeneCards: IFI16; OMA:IFI16 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001033384
NM_001177349
NM_001177350
NM_001368798
NM_001368799

Contents

RefSeq (protein)

n/a

Location (UCSC) Chr 1: 159 – 159.06 Mb Chr 1: 173.39 – 173.43 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Gamma-interferon-inducible protein Ifi-16 (Ifi-16) also known as interferon-inducible myeloid differentiation transcriptional activator is a protein that in humans is encoded by the IFI16 gene. [5] [6] [7]

Function

This gene encodes a member of the HIN-200 (hematopoietic interferon-inducible nuclear antigens with 200 amino acid repeats) family of cytokines. The encoded protein contains domains involved in DNA binding, transcriptional regulation, and protein-protein interactions. The protein localizes to the nucleoplasm and nucleoli, and interacts with p53, [8] retinoblastoma-1 and BRCA1. [9] It modulates p53 function, and inhibits cell growth in the Ras/Raf signaling pathway. [7] IFI16 has been shown to play a role in the sensing of intracellular DNA [10] - a hallmark of virally infected cells - and has also been linked to the death of HIV-infected helper CD4 T cells by pyroptosis, a highly inflammatory form of programmed cell death. [11] [12] Recently, it has been shown how IFI16, once extracellularly released, can induce inflammation upon TLR4 binding, acting as a DAMP. [13]

Related Research Articles

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p53 Mammalian protein found in humans

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<span class="mw-page-title-main">Acute myeloblastic leukemia with maturation</span> Medical condition

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<span class="mw-page-title-main">Promyelocytic leukemia protein</span> Protein-coding gene in the species Homo sapiens

Promyelocytic leukemia protein (PML) is the protein product of the PML gene. PML protein is a tumor suppressor protein required for the assembly of a number of nuclear structures, called PML-nuclear bodies, which form amongst the chromatin of the cell nucleus. These nuclear bodies are present in mammalian nuclei, at about 1 to 30 per cell nucleus. PML-NBs are known to have a number of regulatory cellular functions, including involvement in programmed cell death, genome stability, antiviral effects and controlling cell division. PML mutation or loss, and the subsequent dysregulation of these processes, has been implicated in a variety of cancers.

<span class="mw-page-title-main">TP53BP1</span> Protein-coding gene in the species Homo sapiens

Tumor suppressor p53-binding protein 1 also known as p53-binding protein 1 or 53BP1 is a protein that in humans is encoded by the TP53BP1 gene.

<span class="mw-page-title-main">PIAS4</span> Protein-coding gene in the species Homo sapiens

E3 SUMO-protein ligase PIAS4 is one of several protein inhibitor of activated STAT (PIAS) proteins. It is also known as protein inhibitor of activated STAT protein gamma, and is an enzyme that in humans is encoded by the PIAS4 gene.

<span class="mw-page-title-main">IRF1</span> Protein-coding gene in the species Homo sapiens

Interferon regulatory factor 1 is a protein that in humans is encoded by the IRF1 gene.

<span class="mw-page-title-main">BRIP1</span> Mammalian protein found in Homo sapiens

Fanconi anemia group J protein is a protein that in humans is encoded by the BRCA1-interacting protein 1 (BRIP1) gene.

<span class="mw-page-title-main">IFIT1</span> Protein-coding gene in the species Homo sapiens

Interferon-induced protein with tetratricopeptide repeats 1 is a protein that in humans is encoded by the IFIT1 gene.

<span class="mw-page-title-main">N-myc-interactor</span> Protein-coding gene in the species Homo sapiens

N-myc-interactor also known as N-myc and STAT interactor is a protein that in humans is encoded by the NMI gene.

<span class="mw-page-title-main">KAT6A</span> Protein-coding gene in the species Homo sapiens

K(lysine) acetyltransferase 6A (KAT6A), is an enzyme that, in humans, is encoded by the KAT6A gene. This gene is located on human chromosome 8, band 8p11.21.

<span class="mw-page-title-main">PLK2</span> Protein-coding gene in the species Homo sapiens

Serine/threonine-protein kinase PLK2 is an enzyme that in humans is encoded by the PLK2 gene.

<span class="mw-page-title-main">SP110</span> Protein-coding gene in the species Homo sapiens

SP110 nuclear body protein is a protein that in humans is encoded by the SP110 gene.

<span class="mw-page-title-main">MNDA</span> Protein-coding gene in the species Homo sapiens

Myeloid cell Nuclear Differentiation Antigen is a protein that in humans is encoded as MNDA gene.

<span class="mw-page-title-main">TP53I3</span> Protein-coding gene in the species Homo sapiens

Putative quinone oxidoreductase is an enzyme that in humans is encoded by the TP53I3 gene.

<span class="mw-page-title-main">TP53INP1</span> Protein-coding gene in the species Homo sapiens

Tumor protein p53-inducible nuclear protein 1 is a protein that in humans is encoded by the TP53INP1 gene. In mice this protein is also called TRP53INP1 and is encoded by the Trp53inp1 gene. The protein is also referred to as SIP or "stress inducible protein"

<span class="mw-page-title-main">MX2</span> Protein-coding gene in the species Homo sapiens

Interferon-induced GTP-binding protein Mx2 is a protein that in humans is encoded by the MX2 gene.

<span class="mw-page-title-main">AIM2</span> Protein-coding gene in the species Homo sapiens

Interferon-inducible protein AIM2 also known as absent in melanoma 2 or simply AIM2 is a protein that in humans is encoded by the AIM2 gene.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000163565 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000073491 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Trapani JA, Browne KA, Dawson MJ, Ramsay RG, Eddy RL, Show TB, White PC, Dupont B (Oct 1992). "A novel gene constitutively expressed in human lymphoid cells is inducible with interferon-gamma in myeloid cells". Immunogenetics . 36 (6): 369–76. doi:10.1007/bf00218044. PMID   1526658. S2CID   1196925.
  6. Trapani JA, Dawson M, Apostolidis VA, Browne KA (Dec 1994). "Genomic organization of IFI16, an interferon-inducible gene whose expression is associated with human myeloid cell differentiation: correlation of predicted protein domains with exon organization". Immunogenetics. 40 (6): 415–24. doi:10.1007/bf00177824. PMID   7959953. S2CID   2602156.
  7. 1 2 "Entrez Gene: IFI16 interferon, gamma-inducible protein 16".
  8. Ouchi, Mutsuko; Ouchi, Toru (2008-01-01). "Role of IFI16 in DNA damage and checkpoint". Frontiers in Bioscience . 13 (13): 236–239. doi: 10.2741/2673 . ISSN   1093-9946. PMID   17981541.
  9. Dutta, Dipanjan; Dutta, Sujoy; Veettil, Mohanan Valiya; Roy, Arunava; Ansari, Mairaj Ahmed; Iqbal, Jawed; Chikoti, Leela; Kumar, Binod; Johnson, Karen E. (2015-06-01). "BRCA1 Regulates IFI16 Mediated Nuclear Innate Sensing of Herpes Viral DNA and Subsequent Induction of the Innate Inflammasome and Interferon-β Responses". PLOS Pathogens. 11 (6): e1005030. doi: 10.1371/journal.ppat.1005030 . ISSN   1553-7374. PMC   4487893 . PMID   26121674. (Retracted, see doi:10.1371/journal.ppat.1010904, PMID   36260608 . If this is an intentional citation to a retracted paper, please replace {{ retracted |...}} with {{ retracted |...|intentional=yes}}.)
  10. Unterholzner L, Keating SE, Baran M, Horan KA, Jensen SB, Sharma S, Sirois CM, Jin T, Latz E, Xiao TS, Fitzgerald KA, Paludan SR, Bowie AG (2010). "IFI16 is an innate immune sensor for intracellular DNA". Nat. Immunol. 11 (11): 997–1004. doi:10.1038/ni.1932. PMC   3142795 . PMID   20890285.
  11. Monroe KM, Yang Z, Johnson JR, Geng X, Doitsh G, Krogan NJ, Greene WC (2014). "IFI16 DNA sensor is required for death of lymphoid CD4 T cells abortively infected with HIV". Science . 343 (6169): 428–32. Bibcode:2014Sci...343..428M. doi:10.1126/science.1243640. PMC   3976200 . PMID   24356113.
  12. Doitsh G, Galloway NL, Geng X, Yang Z, Monroe KM, Zepeda O, Hunt PW, Hatano H, Sowinski S, Muñoz-Arias I, Greene WC (2014). "Cell death by pyroptosis drives CD4 T-cell depletion in HIV-1 infection". Nature . 505 (7484): 509–14. Bibcode:2014Natur.505..509D. doi:10.1038/nature12940. PMC   4047036 . PMID   24356306.
  13. Iannucci A, Caneparo V, Raviola S, Debernardi I, Colangelo D, et al. (2020) Toll-like receptor 4-mediated inflammation triggered by extracellular IFI16 is enhanced by lipopolysaccharide binding. PLOS Pathogens 16(9): e1008811. https://doi.org/10.1371/journal.ppat.1008811

Further reading

This article incorporates text from the United States National Library of Medicine, which is in the public domain.