HOXD3

HOXD3
Identifiers
Aliases	HOXD3 , HOX1D, HOX4, HOX4A, Hox-4.1, homeobox D3
External IDs	OMIM: 142980 MGI: 96207 HomoloGene: 5034 GeneCards: HOXD3
Gene location (Human) Chr. Chromosome 2 (human) [1] Band 2q31.1 Start 176,136,612 bp [1] End 176,173,102 bp [1]
Gene location (Mouse) Chr. Chromosome 2 (mouse) [2] Band 2 C3|2 44.13 cM Start 74,542,271 bp [2] End 74,578,786 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in corpus epididymis germinal epithelium right uterine tube seminal vesicula caput epididymis sperm kidney myometrium stromal cell of endometrium left uterine tube Top expressed in ureteric bud medulla oblongata enteric nervous system wall of urinary bladder urethra male urethra ureter renal pelvis mucosa of urinary bladder Collecting duct of renal tubule More reference expression data BioGPS More reference expression data
Gene ontology Molecular function DNA-binding transcription factor activity sequence-specific DNA binding DNA binding protein binding RNA polymerase II transcription regulatory region sequence-specific DNA binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific RNA polymerase II cis-regulatory region sequence-specific DNA binding Cellular component aggresome nucleoplasm nucleus nuclear body Biological process Notch signaling pathway glossopharyngeal nerve morphogenesis embryonic skeletal system morphogenesis multicellular organism development thyroid gland development cartilage development positive regulation of gene expression cell-matrix adhesion regulation of transcription, DNA-templated positive regulation of neuron differentiation transcription, DNA-templated anterior/posterior pattern specification transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 3232 15434 Ensembl ENSG00000128652 ENSMUSG00000079277 UniProt P31249 P09027 RefSeq (mRNA) NM_006898 NM_010468 RefSeq (protein) NP_008829 NP_034598 Location (UCSC) Chr 2: 176.14 – 176.17 Mb Chr 2: 74.54 – 74.58 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Homeobox protein Hox-D3 is a protein that in humans is encoded by the HOXD3 gene. ^{[5] [6] [7]}

Function

This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, located on different chromosomes, consisting of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXD genes located at 2q31-2q37 chromosome regions. Deletions that removed the entire HOXD gene cluster or 5' end of this cluster have been associated with severe limb and genital abnormalities. The protein encoded by this gene may play a role in the regulation of cell adhesion processes. ^[7]

See also

• Homeobox

References

1. GRCh38: Ensembl release 89: ENSG00000128652 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000079277 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. McAlpine PJ, Shows TB (Jul 1990). "Nomenclature for human homeobox genes". Genomics. 7 (3): 460. doi:10.1016/0888-7543(90)90186-X. PMID   1973146.
6. Scott MP (Nov 1992). "Vertebrate homeobox gene nomenclature". Cell. 71 (4): 551–3. doi:10.1016/0092-8674(92)90588-4. PMID   1358459. S2CID   13370372.
7. "Entrez Gene: HOXD3 homeobox D3".

Further reading

• Taniguchi Y, Fujii A, Moriuchi T (Oct 1992). "Cloning and sequencing of the human homeobox gene HOX4A". Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression. 1132 (3): 332–4. doi:10.1016/0167-4781(92)90173-w. PMID   1358204.
• Magli MC, Barba P, Celetti A, De Vita G, Cillo C, Boncinelli E (Jul 1991). "Coordinate regulation of HOX genes in human hematopoietic cells". Proceedings of the National Academy of Sciences of the United States of America. 88 (14): 6348–52. Bibcode:1991PNAS...88.6348M. doi: 10.1073/pnas.88.14.6348 . PMC   52080 . PMID   1712489.
• Acampora D, D'Esposito M, Faiella A, Pannese M, Migliaccio E, Morelli F, Stornaiuolo A, Nigro V, Simeone A, Boncinelli E (Dec 1989). "The human HOX gene family". Nucleic Acids Research. 17 (24): 10385–402. doi:10.1093/nar/17.24.10385. PMC   335308 . PMID   2574852.
• Boncinelli E, Acampora D, Pannese M, D'Esposito M, Somma R, Gaudino G, Stornaiuolo A, Cafiero M, Faiella A, Simeone A (1990). "Organization of human class I homeobox genes". Genome. 31 (2): 745–56. doi:10.1139/g89-133. PMID   2576652.
• Cannizzaro LA, Croce CM, Griffin CA, Simeone A, Boncinelli E, Huebner K (Jul 1987). "Human homeo box-containing genes located at chromosome regions 2q31----2q37 and 12q12----12q13". American Journal of Human Genetics. 41 (1): 1–15. PMC   1684175 . PMID   2886047.
• Taniguchi Y, Komatsu N, Moriuchi T (May 1995). "Overexpression of the HOX4A (HOXD3) homeobox gene in human erythroleukemia HEL cells results in altered adhesive properties". Blood. 85 (10): 2786–94. doi: 10.1182/blood.V85.10.2786.bloodjournal85102786 . PMID   7742539.
• Guazzi S, Lonigro R, Pintonello L, Boncinelli E, Di Lauro R, Mavilio F (Jul 1994). "The thyroid transcription factor-1 gene is a candidate target for regulation by Hox proteins". The EMBO Journal. 13 (14): 3339–47. doi:10.1002/j.1460-2075.1994.tb06636.x. PMC   395231 . PMID   7913891.
• Manley NR, Capecchi MR (Mar 1998). "Hox group 3 paralogs regulate the development and migration of the thymus, thyroid, and parathyroid glands". Developmental Biology. 195 (1): 1–15. doi: 10.1006/dbio.1997.8827 . PMID   9520319.
• Del Campo M, Jones MC, Veraksa AN, Curry CJ, Jones KL, Mascarello JT, Ali-Kahn-Catts Z, Drumheller T, McGinnis W (Jul 1999). "Monodactylous limbs and abnormal genitalia are associated with hemizygosity for the human 2q31 region that includes the HOXD cluster". American Journal of Human Genetics. 65 (1): 104–10. doi:10.1086/302467. PMC   1378080 . PMID   10364522.
• Myers C, Charboneau A, Boudreau N (Jan 2000). "Homeobox B3 promotes capillary morphogenesis and angiogenesis". The Journal of Cell Biology. 148 (2): 343–51. doi:10.1083/jcb.148.2.343. PMC   2174277 . PMID   10648567.
• Limongi MZ, Pelliccia F, Gaddini L, Rocchi A (2000). "Clustering of two fragile sites and seven homeobox genes in human chromosome region 2q31-->q32.1". Cytogenetics and Cell Genetics. 90 (1–2): 151–3. doi:10.1159/000015651. PMID   11060466. S2CID   35579702.
• Kosaki K, Kosaki R, Suzuki T, Yoshihashi H, Takahashi T, Sasaki K, Tomita M, McGinnis W, Matsuo N (Feb 2002). "Complete mutation analysis panel of the 39 human HOX genes". Teratology. 65 (2): 50–62. doi:10.1002/tera.10009. PMID   11857506.
• Okubo Y, Hamada J, Takahashi Y, Tada M, Tsutsumida A, Furuuchi K, Aoyama T, Sugihara T, Moriuchi T (2002). "Transduction of HOXD3-antisense into human melanoma cells results in decreased invasive and motile activities". Clinical & Experimental Metastasis. 19 (6): 503–11. doi:10.1023/A:1020346211686. PMID   12405287. S2CID   2728036.
• Boudreau NJ, Varner JA (Feb 2004). "The homeobox transcription factor Hox D3 promotes integrin alpha5beta1 expression and function during angiogenesis". The Journal of Biological Chemistry. 279 (6): 4862–8. doi: 10.1074/jbc.M305190200 . PMID   14610084.
• Hansen SL, Myers CA, Charboneau A, Young DM, Boudreau N (Dec 2003). "HoxD3 accelerates wound healing in diabetic mice". The American Journal of Pathology. 163 (6): 2421–31. doi:10.1016/S0002-9440(10)63597-3. PMC   1892363 . PMID   14633614.
• Chen Y, Xu B, Arderiu G, Hashimoto T, Young WL, Boudreau N, Yang GY (Nov 2004). "Retroviral delivery of homeobox D3 gene induces cerebral angiogenesis in mice". Journal of Cerebral Blood Flow and Metabolism. 24 (11): 1280–7. doi: 10.1097/01.WCB.0000141770.09022.AB . PMID   15545924.

External links

• HOXD3+protein,+human at the US National Library of Medicine Medical Subject Headings (MeSH)

This article incorporates text from the United States National Library of Medicine, which is in the public domain.