Achaete-scute complex

Last updated
Achaete-scute-related
Identifiers
SymbolMASH1/Ascl1a-like
InterPro IPR015660
Achaete-scute complex protein T5
Identifiers
Organism Drosophila melanogaster
Symbolac
UniProt P10083
Search for
Structures Swiss-model
Domains InterPro
Achaete-scute complex protein T4
Identifiers
Organism Drosophila melanogaster
Symbolsc
UniProt P10084
Search for
Structures Swiss-model
Domains InterPro
Achaete-scute complex protein T3
Identifiers
Organism Drosophila melanogaster
Symboll(1)sc
UniProt P09774
Search for
Structures Swiss-model
Domains InterPro
Achaete-scute complex protein T8
Identifiers
Organism Drosophila melanogaster
Symbolase
UniProt P09775
Search for
Structures Swiss-model
Domains InterPro

The achaete-scute complex (AS-C) is a group of four genes (achaete, scute, lethal of scute, and asense) in the fruit fly Drosophila melanogaster . These genes encode basic helix-loop-helix transcription factors that have been best studied in their regulation of nervous system development. [1] [2] Because of their role in specifying neuroblast fate, the genes of the AS-C are called proneural genes. However, the AS-C has non-proneural functions, such as specifying muscle and gut progenitors. [1] Homologues of AS-C in other animals, including humans and other vertebrates, have similar functions.

Contents

Genes of the AS-C interact with the Notch pathway in both their proneural functions as well as their specification of gut and muscle cells. [1]

Genetic structure

The complex is found near the tip of the X chromosome, just 3' of yellow, in chromosome bands 1A6 through 1B3. It occupies around 93 kb of the genome, with all four genes oriented in the same direction.

achaete

The 5′-most gene of the achaete-scute complex, achaete (short form ac), is a small gene of less than 1000 bp. The Achaete protein is 201 amino acids long and has a relative size of 23 kDa. [3] As with most classically described Drosophila genes, achaete is named for its mutant phenotype, which is the lack of sensory hairs (macrochaetae and microchaetae) on the back of the adult fly. Achaete functions to specify sensory hair cell fate. It functions downstream of other genes, including hairy and extramacrochaete, that set up fields of cells that may express achaete.

scute

Scute (short form sc) is found in about 25 kb (3)′ of achaete. It is a 1.45 kb gene encoding a 345 aa protein of 38.2 kDa. [4]

lethal or scute

lethal or scute (short form l(1)sc) is found about 12 kb 3′ of scute. It is a 1.1 kb gene encoding a 257 aa protein of 29 kDa. [5]

asense

asense (short form ase) found 45 kb 3′ of l(1)sc. It is a 2.8 kb gene encoding a 486 aa protein of 53.2 kDa. [6]

See also

Related Research Articles

<i>Drosophila melanogaster</i> Species of fruit fly

Drosophila melanogaster is a species of fly in the family Drosophilidae. The species is often referred to as the fruit fly or lesser fruit fly, or less commonly the "vinegar fly", "pomace fly", or "banana fly". In the wild, D. melanogaster are attracted to rotting fruit and fermenting beverages, and are often found in orchards, kitchens and pubs.

The fruitless gene (fru) is a Drosophila melanogaster gene that encodes several variants of a putative transcription factor protein. Normal fruitless function is required for proper development of several anatomical structures necessary for courtship, including motor neurons which innervate muscles needed for fly sexual behaviors. The gene does not have an obvious mammalian homolog, but appears to function in sex determination in species as distant as the mosquito Anopheles gambiae.

Period (per) is a gene located on the X chromosome of Drosophila melanogaster. Oscillations in levels of both per transcript and its corresponding protein PER have a period of approximately 24 hours and together play a central role in the molecular mechanism of the Drosophila biological clock driving circadian rhythms in eclosion and locomotor activity. Mutations in the per gene can shorten (perS), lengthen (perL), and even abolish (per0) the period of the circadian rhythm.

The gene extramachrochaetae (emc) is a Drosophila melanogaster gene that codes for the Emc protein, which has a wide variety of developmental roles. It was named, as is common for Drosophila genes, after the phenotypic change caused by a mutation in the gene (macrochaetae are the longer bristles on Drosophila).

<span class="mw-page-title-main">NUMB (gene)</span> Protein-coding gene in the species Homo sapiens

Protein numb homolog is a protein that in humans is encoded by the NUMB gene. The protein encoded by this gene plays a role in the determination of cell fates during development. The encoded protein, whose degradation is induced in a proteasome-dependent manner by MDM2, is a membrane-bound protein that has been shown to associate with EPS15, LNX1, and NOTCH1. Four transcript variants encoding different isoforms have been found for this gene.

<span class="mw-page-title-main">DNAJA3</span> Protein-coding gene in the species Homo sapiens

DnaJ homolog subfamily A member 3, mitochondrial, also known as Tumorous imaginal disc 1 (TID1), is a protein that in humans is encoded by the DNAJA3 gene on chromosome 16. This protein belongs to the DNAJ/Hsp40 protein family, which is known for binding and activating Hsp70 chaperone proteins to perform protein folding, degradation, and complex assembly. As a mitochondrial protein, it is involved in maintaining membrane potential and mitochondrial DNA (mtDNA) integrity, as well as cellular processes such as cell movement, growth, and death. Furthermore, it is associated with a broad range of diseases, including neurodegenerative diseases, inflammatory diseases, and cancers.

<span class="mw-page-title-main">Myocyte-specific enhancer factor 2A</span> Protein-coding gene in the species Homo sapiens

Myocyte-specific enhancer factor 2A is a protein that in humans is encoded by the MEF2A gene. MEF2A is a transcription factor in the Mef2 family. In humans it is located on chromosome 15q26. Certain mutations in MEF2A cause an autosomal dominant form of coronary artery disease and myocardial infarction.

<span class="mw-page-title-main">HES1</span> Protein-coding gene in the species Homo sapiens

Transcription factor HES1 is a protein that is encoded by the Hes1 gene, and is the mammalian homolog of the hairy gene in Drosophila. HES1 is one of the seven members of the Hes gene family (HES1-7). Hes genes code nuclear proteins that suppress transcription.

<span class="mw-page-title-main">SIM2</span> Protein-coding gene in the species Homo sapiens

Single-minded homolog 2 is a protein that in humans is encoded by the SIM2 gene. It plays a major role in the development of the central nervous system midline as well as the construction of the face and head.

<span class="mw-page-title-main">ASCL1</span> Protein-coding gene in humans

Achaete-scute homolog 1 is a protein that in humans is encoded by the ASCL1 gene. Because it was discovered subsequent to studies on its homolog in Drosophila, the Achaete-scute complex, it was originally named MASH-1 for mammalian achaete scute homolog-1.

<span class="mw-page-title-main">ZW10</span>

Centromere/kinetochore protein zw10 homolog is a protein that in humans is encoded by the ZW10 gene. This gene encodes a protein that is one of many involved in mechanisms to ensure proper chromosome segregation during cell division. The encoded protein binds to centromeres during the prophase, metaphase, and early anaphase cell division stages and to kinetochore microtubules during metaphase.

<span class="mw-page-title-main">ATOH1</span> Protein-coding gene in the species Homo sapiens

Protein atonal homolog 1 is a protein that in humans is encoded by the ATOH1 gene.

<span class="mw-page-title-main">ASCL2</span> Protein-coding gene in humans

Achaete-scute complex homolog 2 (Drosophila), also known as ASCL2, is an imprinted human gene.

<span class="mw-page-title-main">LLGL1</span> Protein-coding gene in the species Homo sapiens

Lethal(2) giant larvae protein homolog 1 is a protein that in humans is encoded by the LLGL1 gene.

<span class="mw-page-title-main">Notch proteins</span> Protein family

Notch proteins are a family of type 1 transmembrane proteins that form a core component of the Notch signaling pathway, which is highly conserved in animals. The Notch extracellular domain mediates interactions with DSL family ligands, allowing it to participate in juxtacrine signaling. The Notch intracellular domain acts as a transcriptional activator when in complex with CSL family transcription factors. Members of this type 1 transmembrane protein family share several core structures, including an extracellular domain consisting of multiple epidermal growth factor (EGF)-like repeats and an intracellular domain transcriptional activation domain (TAD). Notch family members operate in a variety of different tissues and play a role in a variety of developmental processes by controlling cell fate decisions. Much of what is known about Notch function comes from studies done in Caenorhabditis elegans (C.elegans) and Drosophila melanogaster. Human homologs have also been identified, but details of Notch function and interactions with its ligands are not well known in this context.

<i>Cycle</i> (gene)

Cycle (cyc) is a gene in Drosophila melanogaster that encodes the CYCLE protein (CYC). The Cycle gene (cyc) is expressed in a variety of cell types in a circadian manner. It is involved in controlling both the sleep-wake cycle and circadian regulation of gene expression by promoting transcription in a negative feedback mechanism. The cyc gene is located on the left arm of chromosome 3 and codes for a transcription factor containing a basic helix–loop–helix (bHLH) domain and a PAS domain. The 2.17 kb cyc gene is divided into 5 coding exons totaling 1,625 base pairs which code for 413 aminos acid residues. Currently 19 alleles are known for cyc. Orthologs performing the same function in other species include basic helix-loop-helix ARNT-like protein 1 (ARNTL) and Aryl hydrocarbon receptor nuclear translocator-like 2 (ARNTL2).

Doubletime (DBT), also known as discs overgrown (DCO), is a gene that encodes the doubletime protein in fruit flies. Michael Young and his team at Rockefeller University first identified and characterized the gene in 1998.

Proneural genes encode transcription factors of the basic helix-loop-helix (bHLH) class which are responsible for the development of neuroectodermal progenitor cells. Proneural genes have multiple functions in neural development. They integrate positional information and contribute to the specification of progenitor-cell identity. From the same ectodermal cell types, neural or epidermal cells can develop based on interactions between proneural and neurogenic genes. Neurogenic genes are so called because loss of function mutants show an increase number of developed neural precursors. On the other hand, proneural genes mutants fail to develop neural precursor cells.

María Domínguez Castellano is a Spanish neuroscientist and director of the Department of Developmental Neurobiology in the Institute of Neurosciences, Alicante, Spain, which is a joint Miguel Hernández University of Elche (UMH) and Spanish National Research Council (CSIC) institution.

References

  1. 1 2 3 García-Bellido A, de Celis JF (July 2009). "The complex tale of the achaete-scute complex: a paradigmatic case in the analysis of gene organization and function during development". Genetics. 182 (3): 631–9. doi:10.1534/genetics.109.104083. PMC   2710146 . PMID   19622761.
  2. "Achaete-scute complex" . Retrieved 2009-11-29.
  3. "FlyBase achaete report" . Retrieved 2009-11-29.
  4. "FlyBase scute report" . Retrieved 2009-11-29.
  5. "FlyBase lethal of scute report" . Retrieved 2009-11-29.
  6. "FlyBase asense report" . Retrieved 2009-11-29.