GABPA

Last updated
GABPA
Protein GABPA PDB 1awc.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases GABPA , E4TF1-60, E4TF1A, NFT2, NRF2, NRF2A, RCH04A07, GA binding protein transcription factor alpha subunit, GA binding protein transcription factor subunit alpha
External IDs OMIM: 600609 MGI: 95610 HomoloGene: 1543 GeneCards: GABPA
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001197297
NM_002040

NM_008065

RefSeq (protein)

NP_001184226
NP_002031
NP_002031.2

NP_032091

Location (UCSC) Chr 21: 25.73 – 25.77 Mb Chr 16: 84.63 – 84.66 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

GA-binding protein alpha chain is a protein that in humans is encoded by the GABPA gene. [5]

Contents

Function

This gene encodes one of three GA-binding protein transcription factor subunits which functions as a DNA-binding subunit. Since this subunit shares identity with a subunit encoding the nuclear respiratory factor 2 gene, it is likely involved in activation of cytochrome oxidase expression and nuclear control of mitochondrial function. This subunit also shares identity with a subunit constituting the transcription factor E4TF1, responsible for expression of the adenovirus E4 gene. Because of its chromosomal localization and ability to form heterodimers with other polypeptides, this gene may play a role in the Down Syndrome phenotype. [6]

Interactions

GABPA has been shown to interact with Host cell factor C1, [7] Sp1 transcription factor [8] and Sp3 transcription factor. [8]

Related Research Articles

In molecular biology and genetics, transcriptional regulation is the means by which a cell regulates the conversion of DNA to RNA (transcription), thereby orchestrating gene activity. A single gene can be regulated in a range of ways, from altering the number of copies of RNA that are transcribed, to the temporal control of when the gene is transcribed. This control allows the cell or organism to respond to a variety of intra- and extracellular signals and thus mount a response. Some examples of this include producing the mRNA that encode enzymes to adapt to a change in a food source, producing the gene products involved in cell cycle specific activities, and producing the gene products responsible for cellular differentiation in multicellular eukaryotes, as studied in evolutionary developmental biology.

TATA-binding protein

The TATA-binding protein (TBP) is a general transcription factor that binds specifically to a DNA sequence called the TATA box. This DNA sequence is found about 30 base pairs upstream of the transcription start site in some eukaryotic gene promoters.

AP-1 transcription factor Instance of defined set in Homo sapiens with Reactome ID (R-HSA-6806560)

Activator protein 1 (AP-1) is a transcription factor that regulates gene expression in response to a variety of stimuli, including cytokines, growth factors, stress, and bacterial and viral infections. AP-1 controls a number of cellular processes including differentiation, proliferation, and apoptosis. The structure of AP-1 is a heterodimer composed of proteins belonging to the c-Fos, c-Jun, ATF and JDP families.

Transcription factor TFIIA is a nuclear protein involved in the RNA polymerase II-dependent transcription of DNA. TFIIA is one of several general (basal) transcription factors (GTFs) that are required for all transcription events that use RNA polymerase II. Other GTFs include TFIID, a complex composed of the TATA binding protein TBP and TBP-associated factors (TAFs), as well as the factors TFIIB, TFIIE, TFIIF, and TFIIH. Together, these factors are responsible for promoter recognition and the formation of a transcription preinitiation complex (PIC) capable of initiating RNA synthesis from a DNA template.

RUNX1 Protein-coding gene in the species Homo sapiens

Runt-related transcription factor 1 (RUNX1) also known as acute myeloid leukemia 1 protein (AML1) or core-binding factor subunit alpha-2 (CBFA2) is a protein that in humans is encoded by the RUNX1 gene.

POLR2A

DNA-directed RNA polymerase II subunit RPB1, also known as RPB1, is an enzyme that in humans is encoded by the POLR2A gene.

ATF1

Cyclic AMP-dependent transcription factor ATF-1 is a protein that in humans is encoded by the ATF1 gene.

NFYB

Nuclear transcription factor Y subunit beta is a protein that in humans is encoded by the NFYB gene.

TAF1

Transcription initiation factor TFIID subunit 1, also known as transcription initiation factor TFIID 250 kDa subunit (TAFII-250) or TBP-associated factor 250 kDa (p250), is a protein that in humans is encoded by the TAF1 gene.

Structure specific recognition protein 1

FACT complex subunit SSRP1 also known as structure specific recognition protein 1 is a protein that in humans is encoded by the SSRP1 gene.

TAF4

Transcription initiation factor TFIID subunit 4 is a protein that in humans is encoded by the TAF4 gene.

RDBP Protein

Negative elongation factor E is a protein that in humans is encoded by the RDBP gene.

NFYC

Nuclear transcription factor Y subunit gamma is a protein that in humans is encoded by the NFYC gene.

GABPB2

GA-binding protein subunit beta-1 is a protein that in humans is encoded by the GABPB1 gene.

RYBP

RING1 and YY1-binding protein is a protein that in humans is encoded by the RYBP gene.

GTF2F1

General transcription factor IIF subunit 1 is a protein that in humans is encoded by the GTF2F1 gene.

GTF2F2

General transcription factor IIF subunit 2 is a protein that in humans is encoded by the GTF2F2 gene.

GTF2A1

Transcription initiation factor IIA subunit 1 is a protein that in humans is encoded by the GTF2A1 gene.

GTF2E2

General transcription factor IIE subunit 2 (GTF2E2), also known as transcription initiation factor IIE subunit beta (TFIIE-beta), is a protein that in humans is encoded by the GTF2E2 gene.

GTF2E1

General transcription factor IIE subunit 1 (GTF2E1), also known as transcription initiation factor IIE subunit alpha (TFIIE-alpha), is a protein that in humans is encoded by the GTF2E1 gene.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000154727 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000008976 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Watanabe H, Sawada J, Yano K, Yamaguchi K, Goto M, Handa H (Mar 1993). "cDNA cloning of transcription factor E4TF1 subunits with Ets and notch motifs". Molecular and Cellular Biology. 13 (3): 1385–91. doi:10.1128/MCB.13.3.1385. PMC   359448 . PMID   8441384.
  6. "Entrez Gene: GABPA GA binding protein transcription factor, alpha subunit 60kDa".
  7. Vogel JL, Kristie TM (Feb 2000). "The novel coactivator C1 (HCF) coordinates multiprotein enhancer formation and mediates transcription activation by GABP". The EMBO Journal. 19 (4): 683–90. doi:10.1093/emboj/19.4.683. PMC   305606 . PMID   10675337.
  8. 1 2 Galvagni F, Capo S, Oliviero S (Mar 2001). "Sp1 and Sp3 physically interact and co-operate with GABP for the activation of the utrophin promoter" (PDF). Journal of Molecular Biology. 306 (5): 985–96. doi:10.1006/jmbi.2000.4335. hdl: 2318/141203 . PMID   11237613.

Further reading