BCL11A

Last updated

BCL11A
Identifiers
Aliases BCL11A , BCL11A-L, BCL11A-S, BCL11A-XL, BCL11a-M, CTIP1, EVI9, HBFQTL5, ZNF856, B-cell CLL/lymphoma 11A, DILOS, B cell CLL/lymphoma 11A, BAF complex component, BAF chromatin remodeling complex subunit SMARCM1
External IDs OMIM: 606557; MGI: 106190; HomoloGene: 11284; GeneCards: BCL11A; OMA:BCL11A - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001159289
NM_001159290
NM_001242934
NM_016707

RefSeq (protein)

NP_060484
NP_075044
NP_612569
NP_001350793
NP_001352538

Contents

NP_001152761
NP_001152762
NP_001229863
NP_057916

Location (UCSC) Chr 2: 60.45 – 60.55 Mb Chr 11: 24.08 – 24.17 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

B-cell lymphoma/leukemia 11A is a protein that in humans is encoded by the BCL11A gene. [5] [6] [7]

Function

The BCL11A gene encodes for a regulatory C2H2 type zinc-finger protein, that can bind to the DNA. Five alternatively spliced transcript variants of this gene, which encode distinct isoforms, have been reported. [7] The protein associates with the SWI/SNF complex, that regulates gene expression via chromatin remodeling. [8]

BCL11A is highly expressed in several hematopoietic lineages, and plays a role in the switch from γ- to β-globin expression during the fetal to adult erythropoiesis transition. [9]

Furthermore, BCL11A is expressed in the brain, where it forms a protein complex with CASK to regulate axon outgrowth and branching. [10] In the neocortex, BCL11A binds to the TBR1 regulatory region and inhibits the expression of TBR1. [11]

Tetramerization of BCL11A shields it from proteasomal degradation and is critical for its γ-globin repression activity. [12]

Clinical significance

The corresponding Bcl11a mouse gene is a common site of retroviral integration in myeloid leukemia, and may function as a leukemia disease gene, in part, through its interaction with BCL6. During hematopoietic cell differentiation, this gene is down-regulated. It is possibly involved in lymphoma pathogenesis since translocations associated with B-cell malignancies also deregulates its expression. In addition, BCL11A has been found to play a role in the suppression of fetal hemoglobin production. Therapeutic strategies aimed at increasing fetal hemoglobin production in diseases such as beta thalassemia and sickle cell anemia by inhibiting BCL11A are currently being explored. [13] [14]

Furthermore, heterozygous de novo mutations in BCL11A have been identified in an intellectual disability disorder, accompanied with global developmental delay and autism spectrum disorder. [15] These mutations disrupt BCL11A homodimerization and transcriptional regulation.

BCL11A has also been identified as an important gene of interest in type-2 diabetes. Methylation of BCl11A has been hypothesized to contribute to type-2 diabetes risk, while BCL11a loss in a human islet model was demonstrated to result in an increase in insulin secretion. [16] [17]

Interactions

BCL11A has been shown to interact with a number of proteins. BCL11A was initially discovered as a COUP-TFI interacting protein. [18] In the nucleus, BCL11A forms paraspeckles that co-localize with NONO. [15] In neurons, BCL11A interacts with CASK to regulate target genes. [10] Furthermore, BCL11A interacts with the neuron-specific protein TBR1, which is also implicated in intellectual disability and autism spectrum disorder. [19]

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000119866 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000000861 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Satterwhite E, Sonoki T, Willis TG, Harder L, Nowak R, Arriola EL, et al. (December 2001). "The BCL11 gene family: involvement of BCL11A in lymphoid malignancies". Blood. 98 (12): 3413–20. doi: 10.1182/blood.V98.12.3413 . PMID   11719382.
  6. Uda M, Galanello R, Sanna S, Lettre G, Sankaran VG, Chen W, et al. (February 2008). "Genome-wide association study shows BCL11A associated with persistent fetal hemoglobin and amelioration of the phenotype of beta-thalassemia". Proceedings of the National Academy of Sciences of the United States of America. 105 (5): 1620–5. Bibcode:2008PNAS..105.1620U. doi: 10.1073/pnas.0711566105 . PMC   2234194 . PMID   18245381.
  7. 1 2 "Entrez Gene: BCL11A B-cell CLL/lymphoma 11A (zinc finger protein)".
  8. Kadoch C, Hargreaves DC, Hodges C, Elias L, Ho L, Ranish J, et al. (June 2013). "Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy". Nature Genetics. 45 (6): 592–601. doi:10.1038/ng.2628. PMC   3667980 . PMID   23644491.
  9. Smith EC, Luc S, Croney DM, Woodworth MB, Greig LC, Fujiwara Y, et al. (November 2016). "Bcl11a erythroid enhancer". Blood. 128 (19): 2338–2342. doi:10.1182/blood-2016-08-736249. PMC   5106112 . PMID   27707736.
  10. 1 2 Kuo TY, Hong CJ, Chien HL, Hsueh YP (August 2010). "X-linked mental retardation gene CASK interacts with Bcl11A/CTIP1 and regulates axon branching and outgrowth". Journal of Neuroscience Research (in German). 88 (11): 2364–73. doi:10.1002/jnr.22407. PMID   20623620. S2CID   19810502.
  11. Cánovas J, Berndt FA, Sepúlveda H, Aguilar R, Veloso FA, Montecino M, et al. (May 2015). "The Specification of Cortical Subcerebral Projection Neurons Depends on the Direct Repression of TBR1 by CTIP1/BCL11a". The Journal of Neuroscience. 35 (19): 7552–64. doi:10.1523/JNEUROSCI.0169-15.2015. PMC   6705430 . PMID   25972180.
  12. Zheng G, Yin M, Mehta S, Chu IT, Wang S, AlShaye A, et al. (November 2024). "A tetramer of BCL11A is required for stable protein production and fetal hemoglobin silencing". Science. 386 (6725): 1010–1018. doi:10.1126/science.adp3025. PMID   39607926.{{cite journal}}: CS1 maint: overridden setting (link)
  13. Zipkin M (December 2019). "CRISPR's "magnificent moment" in the clinic". Nature Biotechnology. doi:10.1038/d41587-019-00035-2. PMID   33277639. S2CID   213060203.
  14. "Sickle cell: 'The revolutionary gene-editing treatment that gave me new life'". BBC News. 2022-02-20. Retrieved 2023-03-27.
  15. 1 2 Dias C, Estruch SB, Graham SA, McRae J, Sawiak SJ, Hurst JA, et al. (August 2016). "BCL11A Haploinsufficiency Causes an Intellectual Disability Syndrome and Dysregulates Transcription". American Journal of Human Genetics. 99 (2): 253–74. doi:10.1016/j.ajhg.2016.05.030. PMC   4974071 . PMID   27453576.
  16. Peiris H, Park S, Louis S, Gu X, Lam JY, Asplund O, et al. (September 2018). "Discovering human diabetes-risk gene function with genetics and physiological assays". Nature Communications. 9 (1): 3855. Bibcode:2018NatCo...9.3855P. doi: 10.1038/s41467-018-06249-3 . PMC   6155000 . PMID   30242153.
  17. Tang L, Wang L, Ye H, Xu X, Hong Q, Wang H, et al. (August 2014). "BCL11A gene DNA methylation contributes to the risk of type 2 diabetes in males". Experimental and Therapeutic Medicine. 8 (2): 459–463. doi: 10.3892/etm.2014.1783 . PMC   4079426 . PMID   25009601.
  18. Avram D, Fields A, Senawong T, Topark-Ngarm A, Leid M (December 2002). "COUP-TF (chicken ovalbumin upstream promoter transcription factor)-interacting protein 1 (CTIP1) is a sequence-specific DNA binding protein". The Biochemical Journal. 368 (Pt 2): 555–63. doi:10.1042/bj20020496. PMC   1223006 . PMID   12196208.
  19. den Hoed J, Sollis E, Venselaar H, Estruch SB, Deriziotis P, Fisher SE (September 2018). "Functional characterization of TBR1 variants in neurodevelopmental disorder". Scientific Reports. 8 (1): 14279. Bibcode:2018NatSR...814279D. doi:10.1038/s41598-018-32053-6. PMC   6155134 . PMID   30250039.

Further reading

This article incorporates text from the United States National Library of Medicine, which is in the public domain.