ATF5

ATF5
Identifiers
Aliases	ATF5 , ATFX, HMFN0395, activating transcription factor 5
External IDs	OMIM: 606398; MGI: 2141857; HomoloGene: 32142; GeneCards: ATF5; OMA:ATF5 - orthologs
Gene location (Human) Chr. Chromosome 19 (human) [1] Band 19q13.33 Start 49,928,702 bp [1] End 49,933,935 bp [1]
Gene location (Mouse) Chr. Chromosome 7 (mouse) [2] Band 7|7 B3 Start 44,461,680 bp [2] End 44,466,082 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in right lobe of liver right adrenal cortex gastric mucosa left adrenal gland left adrenal cortex left testis vena cava right testis monocyte appendix Top expressed in olfactory system olfactory epithelium left lobe of liver lip esophagus molar calvaria ankle plantaris muscle extensor digitorum longus muscle More reference expression data BioGPS More reference expression data
Gene ontology Molecular function sequence-specific DNA binding DNA binding RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription corepressor activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific chromatin binding tubulin binding kinase binding protein binding DNA-binding transcription factor activity, RNA polymerase II-specific Cellular component centrosome transcription regulator complex nucleoplasm microtubule organizing center cytoskeleton nucleus cytoplasm cytosol Biological process negative regulation of cell cycle G2/M phase transition regulation of transcription, DNA-templated olfactory bulb interneuron differentiation multicellular organism growth regulation of transcription by RNA polymerase II negative regulation of apoptotic process post-embryonic development transcription, DNA-templated cerebellar granule cell precursor proliferation positive regulation of transcription, DNA-templated regulation of centrosome cycle circadian rhythm olfactory bulb interneuron development regulation of gene expression olfactory lobe development negative regulation of transcription, DNA-templated fat cell differentiation positive regulation of transcription by RNA polymerase II negative regulation of cell population proliferation transcription by RNA polymerase II Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 22809 107503 Ensembl ENSG00000169136 ENSMUSG00000038539 UniProt Q9Y2D1 O70191 RefSeq (mRNA) NM_001193646 NM_001290746 NM_012068 NM_030693 RefSeq (protein) NP_001180575 NP_001277675 NP_036200 NP_109618 Location (UCSC) Chr 19: 49.93 – 49.93 Mb Chr 7: 44.46 – 44.47 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Activating transcription factor 5, also known as ATF5, is a protein that, in humans, is encoded by the ATF5 gene. ^[5]

Function

First described by Nishizawa and Nagata, ^[6] ATF5 has been classified as a member of the activating transcription factor (ATF)/cAMP response-element binding protein (CREB) family. ^{[7] [8]}

ATF5 transcripts and protein are expressed in a wide variety of tissues, in particular, high expression of transcripts in liver. It is also present in a variety of tumor cell types.

ATF5 expression is regulated at both the transcriptional and translational level.

ATF5 is expressed in VZ and SVZ during brain development.

The human ATF5 protein is made up of 282 amino acids.

ATF5 is a transcription factor that contains a bZip domain.

See also

• Activating transcription factor

Interactions

ATF5 has been shown to interact with DISC1 ^[9] and TRIB3. ^[10]

References

1. GRCh38: Ensembl release 89: ENSG00000169136 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000038539 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: ATF5 activating transcription factor 5".
6. Pati D, Meistrich ML, Plon SE (July 1999). "Human Cdc34 and Rad6B ubiquitin-conjugating enzymes target repressors of cyclic AMP-induced transcription for proteolysis". Mol. Cell. Biol. 19 (7): 5001–13. doi:10.1128/mcb.19.7.5001. PMC   84326 . PMID   10373550.
7. Hai T, Hartman MG (July 2001). "The molecular biology and nomenclature of the activating transcription factor/cAMP responsive element binding family of transcription factors: activating transcription factor proteins and homeostasis". Gene. 273 (1): 1–11. doi:10.1016/S0378-1119(01)00551-0. PMID   11483355.
8. Vinson C, Myakishev M, Acharya A, Mir AA, Moll JR, Bonovich M (September 2002). "Classification of human B-ZIP proteins based on dimerization properties". Mol. Cell. Biol. 22 (18): 6321–6335. doi:10.1128/MCB.22.18.6321-6335.2002. PMC   135624 . PMID   12192032.
9. Morris JA, Kandpal G, Ma L, Austin CP (Jul 2003). "DISC1 (Disrupted-In-Schizophrenia 1) is a centrosome-associated protein that interacts with MAP1A, MIPT3, ATF4/5 and NUDEL: regulation and loss of interaction with mutation". Hum. Mol. Genet. 12 (13): 1591–1608. doi:10.1093/hmg/ddg162. PMID   12812986.
10. Zhou Y, Li L, Liu Q, Xing G, Kuai X, Sun J, Yin X, Wang J, Zhang L, He F (May 2008). "E3 ubiquitin ligase SIAH1 mediates ubiquitination and degradation of TRB3". Cell. Signal. 20 (5): 942–948. doi:10.1016/j.cellsig.2008.01.010. PMID   18276110.

Further reading

• Pati D, Meistrich ML, Plon SE (1999). "Human Cdc34 and Rad6B ubiquitin-conjugating enzymes target repressors of cyclic AMP-induced transcription for proteolysis". Mol. Cell. Biol. 19 (7): 5001–13. doi:10.1128/mcb.19.7.5001. PMC   84326 . PMID   10373550.
• White JH, McIllhinney RA, Wise A, Ciruela F, Chan WY, Emson PC, Billinton A, Marshall FH (2001). "The GABAB receptor interacts directly with the related transcription factors CREB2 and ATFx". Proc. Natl. Acad. Sci. U.S.A. 97 (25): 13967–13972. Bibcode:2000PNAS...9713967W. doi: 10.1073/pnas.240452197 . PMC   17684 . PMID   11087824.
• Peters CS, Liang X, Li S, Kannan S, Peng Y, Taub R, Diamond RH (2001). "ATF-7, a novel bZIP protein, interacts with the PRL-1 protein-tyrosine phosphatase". J. Biol. Chem. 276 (17): 13718–26. doi: 10.1074/jbc.M011562200 . PMID   11278933.
• Morris JA, Kandpal G, Ma L, Austin CP (2004). "DISC1 (Disrupted-In-Schizophrenia 1) is a centrosome-associated protein that interacts with MAP1A, MIPT3, ATF4/5 and NUDEL: regulation and loss of interaction with mutation". Hum. Mol. Genet. 12 (13): 1591–1608. doi:10.1093/hmg/ddg162. PMID   12812986.
• Yamada S, Ohira M, Horie H, Ando K, Takayasu H, Suzuki Y, Sugano S, Hirata T, Goto T, Matsunaga T, Hiyama E, Hayashi Y, Ando H, Suita S, Kaneko M, Sasaki F, Hashizume K, Ohnuma N, Nakagawara A (2004). "Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas". Oncogene. 23 (35): 5901–5911. doi:10.1038/sj.onc.1207782. PMID   15221005. S2CID   3114318.
• Liu W, Sun M, Jiang J, Shen X, Sun Q, Liu W, Shen H, Gu J (2004). "Cyclin D3 interacts with human activating transcription factor 5 and potentiates its transcription activity". Biochem. Biophys. Res. Commun. 321 (4): 954–960. doi:10.1016/j.bbrc.2004.07.053. PMID   15358120.
• Forgacs E, Gupta SK, Kerry JA, Semmes OJ (2005). "The bZIP transcription factor ATFx binds human T-cell leukemia virus type 1 (HTLV-1) Tax and represses HTLV-1 long terminal repeat-mediated transcription". J. Virol. 79 (11): 6932–6939. doi:10.1128/JVI.79.11.6932-6939.2005. PMC   1112100 . PMID   15890932.
• Al Sarraj J, Vinson C, Thiel G (2005). "Regulation of asparagine synthetase gene transcription by the basic region leucine zipper transcription factors ATF5 and CHOP". Biol. Chem. 386 (9): 873–879. doi:10.1515/BC.2005.102. PMID   16164412. S2CID   24061972.
• Angelastro JM, Canoll PD, Kuo J, Weicker M, Costa A, Bruce JN, Greene LA (2006). "Selective destruction of glioblastoma cells by interference with the activity or expression of ATF5". Oncogene. 25 (6): 907–916. doi:10.1038/sj.onc.1209116. PMID   16170340. S2CID   19581052.
• Wei Y, Jiang J, Sun M, Chen X, Wang H, Gu J (2006). "ATF5 increases cisplatin-induced apoptosis through up-regulation of cyclin D3 transcription in HeLa cells". Biochem. Biophys. Res. Commun. 339 (2): 591–596. doi:10.1016/j.bbrc.2005.11.054. PMID   16300731.
• Kakiuchi C, Ishiwata M, Nanko S, Kunugi H, Minabe Y, Nakamura K, Mori N, Fujii K, Yamada K, Yoshikawa T, Kato T (2007). "Association analysis of ATF4 and ATF5, genes for interacting-proteins of DISC1, in bipolar disorder". Neurosci. Lett. 417 (3): 316–321. doi:10.1016/j.neulet.2007.02.054. PMID   17346882. S2CID   7488805.
• Watatani Y, Ichikawa K, Nakanishi N, Fujimoto M, Takeda H, Kimura N, Hirose H, Takahashi S, Takahashi Y (2008). "Stress-induced translation of ATF5 mRNA is regulated by the 5'-untranslated region". J. Biol. Chem. 283 (5): 2543–2553. doi: 10.1074/jbc.M707781200 . PMID   18055463.

External links

• ATF5+protein,+human at the U.S. National Library of Medicine Medical Subject Headings (MeSH)
• Human ATF5 genome location and ATF5 gene details page in the UCSC Genome Browser .

This article incorporates text from the United States National Library of Medicine, which is in the public domain.